3L31A

Crystal structure of the cbs and drtgg domains of the regulatory region of clostridium perfringens pyrophosphatase complexed with the inhibitor, amp
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
234
structure length
234
Chain Sequence
VKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Probable manganase-dependent inorganic pyrophosphatase
publication title Crystal Structures of the CBS and DRTGG Domains of the Regulatory Region of Clostridiumperfringens Pyrophosphatase Complexed with the Inhibitor, AMP, and Activator, Diadenosine Tetraphosphate.
pubmed doi rcsb
source organism Clostridium perfringens
total genus 71
structure length 234
sequence length 234
chains with identical sequence B
ec nomenclature ec 3.6.1.1: Inorganic diphosphatase.
pdb deposition date 2009-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
A PF07085 DRTGG DRTGG domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 3l31A01
3.40.1390.20 Alpha Beta 3-Layer(aba) Sandwich Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 HprK N-terminal domain-like 3l31A02
1KO7A 5LXQA 2NYCA 2P9MA 2YVYA 1Y5HA 3SL7A 4IY4A 5MMZA 3L2BA 3OCMA 3TE5C 3GBYA 4O9KA 4FRYA 3L31A 2EF7A 4GQWA 2YZQA 2UV6A 2ZY9A 4L28A 3K6EA 4ESYA 4DQWA 1PVMA 2OOXE 3OCOA 3KXRA 3ORGA 3PC2A 3LV9A 4P1GA 4IYSA 2RIHA 3LFZA 2O16A 3FV6A 3TDHC 4UUUA 4FXSA 3PC3A 3I8NA 3K2VA 2QRCE 2OOYE 3KPBA 5K23C 2QRDE 1KNXA 3FWRA 3FHMA 2OUXA 4L0DA 5K24C 2D4ZA 3PC4A 2QH1A 1O50A 2NYEA 4GQVA 2YVXA 4IY3A 1PBJA 4ESYB 5K22B 3LQNA 3KPDA 3KPCA 4PCUA 3DDJA 5K25C 2PFIA 2YVZA 3FWSA 2RIFA 3T4NC 3KH5A 1YAVA 3LHHA 2IOJA 1XKFA 4IY0A 3HF7A 2RC3A 2QREE 2YZIA 4P1OA 4NOCA 2EMQA 3OI8A 4IY2A 2QR1E 2UV7A 2UV5A 4L27A 2QLVC 3FNAA 5IIPA 4COOA 2UV4A 4GQYA 4L3VA 5KS7A 4HG0A
chains in the Genus database with same CATH superfamily
1KO7A 4IWGA 1NMPA 2AM1A 5LXQA 2NYCA 3WSGA 2IU9A 2P9MA 4CVMA 2YVYA 1Y5HA 3SL7A 4IY4A 5MMZA 3L2BA 3OCMA 4C13A 3TE5C 1GG4A 4E75A 3GBYA 4O9KA 4FRYA 3L31A 2WTZA 2EF7A 4GQWA 2YZQA 2UV6A 2ZY9A 4ZIYA 4L28A 3K6EA 4ESYA 3EEQA 4DQWA 1PVMA 4IHFA 2OOXE 3OCOA 4QF5A 3KXRA 3ORGA 2IUAA 3PC2A 3LV9A 4P1GA 4IYSA 2RIHA 4CVLA 3LFZA 2O16A 3FV6A 3TDHC 3ZL8A 4UUUA 4FXSA 3PC3A 3I8NA 3K2VA 2QRCE 2OOYE 4IWMA 3KPBA 4BUBA 5K23C 2QRDE 3WSDA 1KNXA 2YYBA 3FWRA 3FHMA 2OUXA 4L0DA 4CVKA 5K24C 2D4ZA 3PC4A 3EH0A 2QH1A 1O50A 2NYEA 4GQVA 3WSEA 2AM2A 2YVXA 4IY3A 2IU8A 1PBJA 4ESYB 5K22B 4E79A 3LQNA 3KPDA 3KPCA 4PCUA 3DDJA 3WSHA 3ZM5A 4C12A 5K25C 3ZM6A 2PFIA 2YVZA 3FWSA 4QDIA 2RIFA 3T4NC 1E8CA 3KH5A 1YAVA 2FYWA 3LHHA 3PMOA 2IOJA 1XKFA 4IY0A 4IHGA 3HF7A 2RC3A 2QREE 2YZIA 4P1OA 4NOCA 2EMQA 3OI8A 3WSIA 2J9LA 4IY2A 2QR1E 2UV7A 4IHHA 3WSFA 2UV5A 4L27A 2QLVC 3FNAA 5IIPA 1NMOA 4COOA 2UV4A 2JA3A 4GQYA 4L3VA 2XJAA 5KS7A 4HG0A
chains in the Genus database with same CATH topology
1KO7A 5LXQA 2NYCA 2P9MA 2YVYA 1Y5HA 3SL7A 4IY4A 5MMZA 3L2BA 3OCMA 3TE5C 3GBYA 4O9KA 4FRYA 3L31A 2EF7A 4GQWA 2YZQA 2UV6A 2ZY9A 4L28A 3K6EA 4ESYA 4DQWA 1PVMA 2OOXE 3OCOA 3KXRA 3ORGA 3PC2A 3LV9A 4P1GA 4IYSA 2RIHA 3LFZA 2O16A 3FV6A 3TDHC 4UUUA 4FXSA 3PC3A 3I8NA 3K2VA 2QRCE 2OOYE 3KPBA 5K23C 2QRDE 1KNXA 3FWRA 3FHMA 2OUXA 4L0DA 5K24C 2D4ZA 3PC4A 2QH1A 1O50A 2NYEA 4GQVA 2YVXA 4IY3A 1PBJA 4ESYB 5K22B 3LQNA 3KPDA 3KPCA 4PCUA 3DDJA 5K25C 2PFIA 2YVZA 3FWSA 2RIFA 3T4NC 3KH5A 1YAVA 3LHHA 2IOJA 1XKFA 4IY0A 3HF7A 2RC3A 2QREE 2YZIA 4P1OA 4NOCA 2EMQA 3OI8A 2J9LA 4IY2A 2QR1E 2UV7A 2UV5A 4L27A 2QLVC 3FNAA 5IIPA 4COOA 2UV4A 2JA3A 4GQYA 4L3VA 5KS7A 4HG0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KO7 A;  5LXQ A;  2NYC A;  2P9M A;  2YVY A;  1Y5H A;  3SL7 A;  4IY4 A;  5MMZ A;  3L2B A;  3OCM A;  3TE5 C;  3GBY A;  4O9K A;  4FRY A;  3L31 A;  2EF7 A;  4GQW A;  2YZQ A;  2UV6 A;  2ZY9 A;  4L28 A;  3K6E A;  4ESY A;  4DQW A;  1PVM A;  2OOX E;  3OCO A;  3KXR A;  3ORG A;  3PC2 A;  3LV9 A;  4P1G A;  4IYS A;  2RIH A;  3LFZ A;  2O16 A;  3FV6 A;  3TDH C;  4UUU A;  4FXS A;  3PC3 A;  3I8N A;  3K2V A;  2QRC E;  2OOY E;  3KPB A;  5K23 C;  2QRD E;  1KNX A;  3FWR A;  3FHM A;  2OUX A;  4L0D A;  5K24 C;  2D4Z A;  3PC4 A;  2QH1 A;  1O50 A;  2NYE A;  4GQV A;  2YVX A;  4IY3 A;  1PBJ A;  4ESY B;  5K22 B;  3LQN A;  3KPD A;  3KPC A;  4PCU A;  3DDJ A;  5K25 C;  2PFI A;  2YVZ A;  3FWS A;  2RIF A;  3T4N C;  3KH5 A;  1YAV A;  3LHH A;  2IOJ A;  1XKF A;  4IY0 A;  3HF7 A;  2RC3 A;  2QRE E;  2YZI A;  4P1O A;  4NOC A;  2EMQ A;  3OI8 A;  4IY2 A;  2QR1 E;  2UV7 A;  2UV5 A;  4L27 A;  2QLV C;  3FNA A;  5IIP A;  4COO A;  2UV4 A;  4GQY A;  4L3V A;  5KS7 A;  4HG0 A; 
#chains in the Genus database with same CATH topology
 1KO7 A;  4IWG A;  1NMP A;  2AM1 A;  5LXQ A;  2NYC A;  3WSG A;  2IU9 A;  2P9M A;  4CVM A;  2YVY A;  1Y5H A;  3SL7 A;  4IY4 A;  5MMZ A;  3L2B A;  3OCM A;  4C13 A;  3TE5 C;  1GG4 A;  4E75 A;  3GBY A;  4O9K A;  4FRY A;  3L31 A;  2WTZ A;  2EF7 A;  4GQW A;  2YZQ A;  2UV6 A;  2ZY9 A;  4ZIY A;  4L28 A;  3K6E A;  4ESY A;  3EEQ A;  4DQW A;  1PVM A;  4IHF A;  2OOX E;  3OCO A;  4QF5 A;  3KXR A;  3ORG A;  2IUA A;  3PC2 A;  3LV9 A;  4P1G A;  4IYS A;  2RIH A;  4CVL A;  3LFZ A;  2O16 A;  3FV6 A;  3TDH C;  3ZL8 A;  4UUU A;  4FXS A;  3PC3 A;  3I8N A;  3K2V A;  2QRC E;  2OOY E;  4IWM A;  3KPB A;  4BUB A;  5K23 C;  2QRD E;  3WSD A;  1KNX A;  2YYB A;  3FWR A;  3FHM A;  2OUX A;  4L0D A;  4CVK A;  5K24 C;  2D4Z A;  3PC4 A;  3EH0 A;  2QH1 A;  1O50 A;  2NYE A;  4GQV A;  3WSE A;  2AM2 A;  2YVX A;  4IY3 A;  2IU8 A;  1PBJ A;  4ESY B;  5K22 B;  4E79 A;  3LQN A;  3KPD A;  3KPC A;  4PCU A;  3DDJ A;  3WSH A;  3ZM5 A;  4C12 A;  5K25 C;  3ZM6 A;  2PFI A;  2YVZ A;  3FWS A;  4QDI A;  2RIF A;  3T4N C;  1E8C A;  3KH5 A;  1YAV A;  2FYW A;  3LHH A;  3PMO A;  2IOJ A;  1XKF A;  4IY0 A;  4IHG A;  3HF7 A;  2RC3 A;  2QRE E;  2YZI A;  4P1O A;  4NOC A;  2EMQ A;  3OI8 A;  3WSI A;  2J9L A;  4IY2 A;  2QR1 E;  2UV7 A;  4IHH A;  3WSF A;  2UV5 A;  4L27 A;  2QLV C;  3FNA A;  5IIP A;  1NMO A;  4COO A;  2UV4 A;  2JA3 A;  4GQY A;  4L3V A;  2XJA A;  5KS7 A;  4HG0 A; 
#chains in the Genus database with same CATH homology
 1KO7 A;  5LXQ A;  2NYC A;  2P9M A;  2YVY A;  1Y5H A;  3SL7 A;  4IY4 A;  5MMZ A;  3L2B A;  3OCM A;  3TE5 C;  3GBY A;  4O9K A;  4FRY A;  3L31 A;  2EF7 A;  4GQW A;  2YZQ A;  2UV6 A;  2ZY9 A;  4L28 A;  3K6E A;  4ESY A;  4DQW A;  1PVM A;  2OOX E;  3OCO A;  3KXR A;  3ORG A;  3PC2 A;  3LV9 A;  4P1G A;  4IYS A;  2RIH A;  3LFZ A;  2O16 A;  3FV6 A;  3TDH C;  4UUU A;  4FXS A;  3PC3 A;  3I8N A;  3K2V A;  2QRC E;  2OOY E;  3KPB A;  5K23 C;  2QRD E;  1KNX A;  3FWR A;  3FHM A;  2OUX A;  4L0D A;  5K24 C;  2D4Z A;  3PC4 A;  2QH1 A;  1O50 A;  2NYE A;  4GQV A;  2YVX A;  4IY3 A;  1PBJ A;  4ESY B;  5K22 B;  3LQN A;  3KPD A;  3KPC A;  4PCU A;  3DDJ A;  5K25 C;  2PFI A;  2YVZ A;  3FWS A;  2RIF A;  3T4N C;  3KH5 A;  1YAV A;  3LHH A;  2IOJ A;  1XKF A;  4IY0 A;  3HF7 A;  2RC3 A;  2QRE E;  2YZI A;  4P1O A;  4NOC A;  2EMQ A;  3OI8 A;  2J9L A;  4IY2 A;  2QR1 E;  2UV7 A;  2UV5 A;  4L27 A;  2QLV C;  3FNA A;  5IIP A;  4COO A;  2UV4 A;  2JA3 A;  4GQY A;  4L3V A;  5KS7 A;  4HG0 A; 
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