3L6VA

Crystal structure of the xanthomonas campestris gyrase a c-terminal domain
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
348
structure length
313
Chain Sequence
MDLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Twisting of the DNA binding surface by a beta-strand-bearing proline modulates DNA gyrase activity
rcsb
molecule tags Isomerase
source organism Xanthomonas campestris pv. campestris
molecule keywords DNA gyrase subunit A
total genus 74
structure length 313
sequence length 348
chains with identical sequence B
ec nomenclature ec 5.99.1.3: Transferred entry: 5.6.2.3.
pdb deposition date 2009-12-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03989 DNA_gyraseA_C DNA gyrase C-terminal domain, beta-propeller
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.120.10.90 Mainly Beta 6 Propeller Neuraminidase DNA gyrase/topoisomerase IV, subunit A, C-terminal 3l6vA00
3L6VA 4G3NA 1WP5A 1ZI0A 3UC1A 1SUUA 3NO0A
chains in the Genus database with same CATH superfamily
2IVZA 1N1TA 2AEQA 5NN9A 3UC1A 1V2IA 1NCCN 1L7HA 1IVDA 4FPFA 3S94A 1SO7A 5HUNA 4HZVA 4MJVA 5FZNA 4Q1UA 2QWJA 4PWZA 1V3BA 3CL2A 2IAOA 1IVFA 2V91A 4B7QA 1INHA 1CRZA 2VW2A 5HUMA 1MS4A 3SOVA 4ZLRA 4UOUA 4M4UA 4IMBA 5HUKA 4NN9A 4NC5A 3Q6TA 4IN4A 5CGJA 3SILA 4J9TA 2DG0A 4XMIA 1INVA 1E8UA 3SALA 3SANA 1QBIA 5D9BA 2F11A 2FLUX 2GVUA 1L7FA 1V0EA 1E8VA 3V65B 4GZTA 2P4OA 5B2CA 1INYA 2FP8A 1MWEA 3S8VA 4KS5A 2VSKA 1NCDN 4YY8A 4XIKA 2F27A 5GX3A 4H53A 2QWDA 1CVMA 4FPJA 4JMLA 4WA3A 2W5NA 1MR5A 4K3YA 2ISMA 2YA6A 2C4AA 3H71A 4FPCA 3SOQA 4GJTA 1S0JA 1Z4XA 3WN7A 1MS0A 2VSMA 4CPOA 3TI3A 3CKZA 3ALWA 5FZJA 3ZGDA 1Z4WA 2SIMA 4HZWA 5D9CA 5EO7A 4GDIA 4MC7A 2ZW9A 4FOWA 4XJUA 1EUSA 2W20A 4FVKA 4CPNA 3HRPA 4WEFA 4MZEA 3H73A 3A9GA 5H47A 1W8NA 2QWBA 4FPLA 4ZGCA 1DIMA 4YW5A 5HX0A 2HTRA 2IAQA 2B8HA 4O5SA 2VW1A 3D11A 3DASA 1X2JA 2IAXA 1F8EA 1F8BA 4XHBA 2FP9A 2IAUA 4KS2A 4NCSA 1NCAN 1A4QA 4ASCA 2HU0A 3CYEA 5EO8A 2Z32A 2IASA 1OFZA 1VCJA 5GX1A 2GVVA 1WCQA 4MWRA 2SLIA 2QWGA 1IVEA 3NN9A 4X47A 4B7MA 2HTWA 3ALXA 1XOGA 4XJZA 4D52A 3ZGCA 1X2RA 1USXA 3NSSA 4D4UA 4KS4A 2G8SA 5FNQA 2X9MA 2VPJA 3ADEA 1MZ5A 3Q6PA 1V0ZA 3LI3A 5F72C 5FNRA 4MWUA 2XZKA 2H2UA 4L7BA 4GB1A 4H52A 1MS1A 1NN2A 4GZOA 1NNBA 2OJHA 3TI6A 4MWQA 1N6DA 4HW6A 1B9SA 1PJXA 4YW3A 4QN3A 2WOZA 4XJWA 1WCSA 2GVXA 3TIAA 4L7DA 2POOA 1S0IA 4XJAA 3Q6KA 4M3MA 4CPYA 1NMCA 3K36A 3LI4A 4FP3A 1B9VA 1W21A 1E8TA 4XIOA 1NSDA 1U6DX 3AMSA 4YW4A 3O9KA 2A75A 1Z4YA 4HZZA 4MJUA 1W8OA 3K38A 2QWIA 1W1XA 4K1HA 2F12A 1SLLA 4FPKA 4IYGA 4YW2A 5FNTA 1WP5A 1MS3A 1IVGA 1Z50A 6NN9A 2F25A 2VW0A 4K1JA 1INXA 4XE9A 4IFLX 3K3AA 3W09A 1IUCA 4M4VA 1USRA 4XMAA 3L6VA 4XJRA 5JYYA 4FOYA 4GZWA 4X4AA 4WEGA 4I00A 4YZ2A 3WW9A 4G3NA 3B7EA 4Q6KA 1K32A 2VK6A 3T1EA 4GZPA 2C4LA 3TICA 4FPEA 4CHBA 3II7A 2RKCA 3O9JA 3GVJA 1XOEA 2DYHA 2F29A 2XN4A 1V04A 4XYXA 4MWWA 4AGIA 3E5ZA 1V3EA 4GN9A 2XZIA 2AH2A 2CMLA 2ZB5A 4FOVA 2HTUA 2F10A 3AMRA 2HTVA 2YA4A 4MWXA 3TI8A 4YZ3A 4YW1A 3I1CA 4MWYA 1A14N 1NNAA 2F24A 3GVKA 1W0OA 2F0ZA 2YA8A 3DR2A 4N1BA 1EUTA 3BEQA 3HLHA 4FZHA 1INFA 3S8ZA 3O4PA 4CPMA 4QN7A 2QE8A 4KS3A 1A4GA 3A71A 3FVZA 2H2NA 4MWJA 3V64C 4XJQA 4XOGA 3GVLA 2HTQA 3LI5A 3B69A 5D9DA 2ZB6A 1IUBA 2YA7A 1QLGA 1MZ6A 1IVCA 2QWFA 3TC9A 4X49A 2VK5A 3A72A 3SLIA 1S18A 4MWVA 4D8SA 2IAVA 2YDPA 4O5TA 4CSDA 1NMBN 2BZDA 3PJQA 4GZQA 2W38A 4GZSA 4YZ4A 2BERA 4IFJA 4ZY3A 4JF7A 2HT5A 1E1AA 5F9TA 4CH9A 2HT7A 1INGA 2VVZA 5GX2A 1N1SA 3H72A 1DILA 4WA4A 4FJ6A 1SUUA 1V3CA 3SRGA 3FW0A 2W5OA 4FP2A 2XZJA 4FPGA 4FPYA 4HZXA 2IATA 4MX0A 1V3DA 3JU4A 5FWWA 1NNCA 3TIBA 3CL0A 4C1YB 1Q7FA 1N1VA 4L7CA 2YA5A 3TI5A 3K37A 2DSOA 2FPCA 3KGGA 5EX7A 4SLIA 2QWAA 4YZ1A 3WDZA 1POOA 2VWDA 1SLIA 2IARA 1ZI0A 2FHRA 4XILA 1N6FA 1MS8A 2JKBA 4AH4A 2IAWA 4GEZA 4UF7A 1N6EA 3TI4A 5HUGA 4B7RA 5FNSA 4QN5A 1NMAN 1CRUA 2AGSA 2HU4A 4XHXA 1W0PA 1V0FA 2QWEA 4X6KA 4DG6A 1H6LA 5M1ZA 4XJ9A 1Z4ZA 2VAQA 2DG1A 4IQKA 4YZ5A 3D12A 3K39A 1SNTA 4GNBA 3NO0A 4CPZA 1C9UA 7NN9A 1F8CA 4GN8A 2QWHA 2HT8A 4GN7A 1RWIA 2GVWA 1RWLA 2W8BB 2XCYA 4M4NA 3SREA 4A0PA 1IVBA 3KYAA 4D52B 4R40A 2HTYA 3HLIA 2QWKA 2HQSA 4HIZA 1MS9A 5GX5A 1BJIA 4AGTA 4AHAA 4GZXA 3P5BL 4IFNX 4C1YA 1NSCA 1MS5A 3H6JA 5B2DA 3V1SA 3G4HA 3BYCA 2ZZKA 1ZGKA 3A9HA 4XMBA 1VCUA 4QNPA 1N7DA 2BF6A 1EUUA 2F13A 2VK7A 3U0SA 4WA5A 3IAXA 1L7GA 3INBA 1KITA 4QN6A 3S2KA 4K1KA 5FNUA 1IJQA 2F26A 1EURA 1C5KA 1NCBN 1W20A 2FPBA 3WWAA 1F8DA 2IAPA 4HHQA 3SOBB 2ZWAA 4GDJA 5GX4A 4KS1A 1B9TA 4HHOA 4B7JA 1Z4VA 2GHSA 4CPLA 4GNAA 1N1YA 2BATA 2F28A 4MZAA 4HZYA 4D52C 1NPEA 4QN4A 1CQ1A 4FPOB 5GTQA 4K1IA 4B7NA 4MWLA 4GNCA 2W8BA 4BBWA 2YDTA 1S1DA 2QWCA 3VNHA 2SILA 4DGRA 4FQ4A 3VNGA 3G4EA 4FOQA 2AEPA 3OPZA 4XJ8A 1NSBA 1INWA 4FPHA
chains in the Genus database with same CATH topology
3L6VA 4G3NA 1WP5A 1ZI0A 3UC1A 1SUUA 3NO0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L6V A;  4G3N A;  1WP5 A;  1ZI0 A;  3UC1 A;  1SUU A;  3NO0 A; 
#chains in the Genus database with same CATH topology
 2IVZ A;  1N1T A;  2AEQ A;  5NN9 A;  3UC1 A;  1V2I A;  1NCC N;  1L7H A;  1IVD A;  4FPF A;  3S94 A;  1SO7 A;  5HUN A;  4HZV A;  4MJV A;  5FZN A;  4Q1U A;  2QWJ A;  4PWZ A;  1V3B A;  3CL2 A;  2IAO A;  1IVF A;  2V91 A;  4B7Q A;  1INH A;  1CRZ A;  2VW2 A;  5HUM A;  1MS4 A;  3SOV A;  4ZLR A;  4UOU A;  4M4U A;  4IMB A;  5HUK A;  4NN9 A;  4NC5 A;  3Q6T A;  4IN4 A;  5CGJ A;  3SIL A;  4J9T A;  2DG0 A;  4XMI A;  1INV A;  1E8U A;  3SAL A;  3SAN A;  1QBI A;  5D9B A;  2F11 A;  2FLU X;  2GVU A;  1L7F A;  1V0E A;  1E8V A;  3V65 B;  4GZT A;  2P4O A;  5B2C A;  1INY A;  2FP8 A;  1MWE A;  3S8V A;  4KS5 A;  2VSK A;  1NCD N;  4YY8 A;  4XIK A;  2F27 A;  5GX3 A;  4H53 A;  2QWD A;  1CVM A;  4FPJ A;  4JML A;  4WA3 A;  2W5N A;  1MR5 A;  4K3Y A;  2ISM A;  2YA6 A;  2C4A A;  3H71 A;  4FPC A;  3SOQ A;  4GJT A;  1S0J A;  1Z4X A;  3WN7 A;  1MS0 A;  2VSM A;  4CPO A;  3TI3 A;  3CKZ A;  3ALW A;  5FZJ A;  3ZGD A;  1Z4W A;  2SIM A;  4HZW A;  5D9C A;  5EO7 A;  4GDI A;  4MC7 A;  2ZW9 A;  4FOW A;  4XJU A;  1EUS A;  2W20 A;  4FVK A;  4CPN A;  3HRP A;  4WEF A;  4MZE A;  3H73 A;  3A9G A;  5H47 A;  1W8N A;  2QWB A;  4FPL A;  4ZGC A;  1DIM A;  4YW5 A;  5HX0 A;  2HTR A;  2IAQ A;  2B8H A;  4O5S A;  2VW1 A;  3D11 A;  3DAS A;  1X2J A;  2IAX A;  1F8E A;  1F8B A;  4XHB A;  2FP9 A;  2IAU A;  4KS2 A;  4NCS A;  1NCA N;  1A4Q A;  4ASC A;  2HU0 A;  3CYE A;  5EO8 A;  2Z32 A;  2IAS A;  1OFZ A;  1VCJ A;  5GX1 A;  2GVV A;  1WCQ A;  4MWR A;  2SLI A;  2QWG A;  1IVE A;  3NN9 A;  4X47 A;  4B7M A;  2HTW A;  3ALX A;  1XOG A;  4XJZ A;  4D52 A;  3ZGC A;  1X2R A;  1USX A;  3NSS A;  4D4U A;  4KS4 A;  2G8S A;  5FNQ A;  2X9M A;  2VPJ A;  3ADE A;  1MZ5 A;  3Q6P A;  1V0Z A;  3LI3 A;  5F72 C;  5FNR A;  4MWU A;  2XZK A;  2H2U A;  4L7B A;  4GB1 A;  4H52 A;  1MS1 A;  1NN2 A;  4GZO A;  1NNB A;  2OJH A;  3TI6 A;  4MWQ A;  1N6D A;  4HW6 A;  1B9S A;  1PJX A;  4YW3 A;  4QN3 A;  2WOZ A;  4XJW A;  1WCS A;  2GVX A;  3TIA A;  4L7D A;  2POO A;  1S0I A;  4XJA A;  3Q6K A;  4M3M A;  4CPY A;  1NMC A;  3K36 A;  3LI4 A;  4FP3 A;  1B9V A;  1W21 A;  1E8T A;  4XIO A;  1NSD A;  1U6D X;  3AMS A;  4YW4 A;  3O9K A;  2A75 A;  1Z4Y A;  4HZZ A;  4MJU A;  1W8O A;  3K38 A;  2QWI A;  1W1X A;  4K1H A;  2F12 A;  1SLL A;  4FPK A;  4IYG A;  4YW2 A;  5FNT A;  1WP5 A;  1MS3 A;  1IVG A;  1Z50 A;  6NN9 A;  2F25 A;  2VW0 A;  4K1J A;  1INX A;  4XE9 A;  4IFL X;  3K3A A;  3W09 A;  1IUC A;  4M4V A;  1USR A;  4XMA A;  3L6V A;  4XJR A;  5JYY A;  4FOY A;  4GZW A;  4X4A A;  4WEG A;  4I00 A;  4YZ2 A;  3WW9 A;  4G3N A;  3B7E A;  4Q6K A;  1K32 A;  2VK6 A;  3T1E A;  4GZP A;  2C4L A;  3TIC A;  4FPE A;  4CHB A;  3II7 A;  2RKC A;  3O9J A;  3GVJ A;  1XOE A;  2DYH A;  2F29 A;  2XN4 A;  1V04 A;  4XYX A;  4MWW A;  4AGI A;  3E5Z A;  1V3E A;  4GN9 A;  2XZI A;  2AH2 A;  2CML A;  2ZB5 A;  4FOV A;  2HTU A;  2F10 A;  3AMR A;  2HTV A;  2YA4 A;  4MWX A;  3TI8 A;  4YZ3 A;  4YW1 A;  3I1C A;  4MWY A;  1A14 N;  1NNA A;  2F24 A;  3GVK A;  1W0O A;  2F0Z A;  2YA8 A;  3DR2 A;  4N1B A;  1EUT A;  3BEQ A;  3HLH A;  4FZH A;  1INF A;  3S8Z A;  3O4P A;  4CPM A;  4QN7 A;  2QE8 A;  4KS3 A;  1A4G A;  3A71 A;  3FVZ A;  2H2N A;  4MWJ A;  3V64 C;  4XJQ A;  4XOG A;  3GVL A;  2HTQ A;  3LI5 A;  3B69 A;  5D9D A;  2ZB6 A;  1IUB A;  2YA7 A;  1QLG A;  1MZ6 A;  1IVC A;  2QWF A;  3TC9 A;  4X49 A;  2VK5 A;  3A72 A;  3SLI A;  1S18 A;  4MWV A;  4D8S A;  2IAV A;  2YDP A;  4O5T A;  4CSD A;  1NMB N;  2BZD A;  3PJQ A;  4GZQ A;  2W38 A;  4GZS A;  4YZ4 A;  2BER A;  4IFJ A;  4ZY3 A;  4JF7 A;  2HT5 A;  1E1A A;  5F9T A;  4CH9 A;  2HT7 A;  1ING A;  2VVZ A;  5GX2 A;  1N1S A;  3H72 A;  1DIL A;  4WA4 A;  4FJ6 A;  1SUU A;  1V3C A;  3SRG A;  3FW0 A;  2W5O A;  4FP2 A;  2XZJ A;  4FPG A;  4FPY A;  4HZX A;  2IAT A;  4MX0 A;  1V3D A;  3JU4 A;  5FWW A;  1NNC A;  3TIB A;  3CL0 A;  4C1Y B;  1Q7F A;  1N1V A;  4L7C A;  2YA5 A;  3TI5 A;  3K37 A;  2DSO A;  2FPC A;  3KGG A;  5EX7 A;  4SLI A;  2QWA A;  4YZ1 A;  3WDZ A;  1POO A;  2VWD A;  1SLI A;  2IAR A;  1ZI0 A;  2FHR A;  4XIL A;  1N6F A;  1MS8 A;  2JKB A;  4AH4 A;  2IAW A;  4GEZ A;  4UF7 A;  1N6E A;  3TI4 A;  5HUG A;  4B7R A;  5FNS A;  4QN5 A;  1NMA N;  1CRU A;  2AGS A;  2HU4 A;  4XHX A;  1W0P A;  1V0F A;  2QWE A;  4X6K A;  4DG6 A;  1H6L A;  5M1Z A;  4XJ9 A;  1Z4Z A;  2VAQ A;  2DG1 A;  4IQK A;  4YZ5 A;  3D12 A;  3K39 A;  1SNT A;  4GNB A;  3NO0 A;  4CPZ A;  1C9U A;  7NN9 A;  1F8C A;  4GN8 A;  2QWH A;  2HT8 A;  4GN7 A;  1RWI A;  2GVW A;  1RWL A;  2W8B B;  2XCY A;  4M4N A;  3SRE A;  4A0P A;  1IVB A;  3KYA A;  4D52 B;  4R40 A;  2HTY A;  3HLI A;  2QWK A;  2HQS A;  4HIZ A;  1MS9 A;  5GX5 A;  1BJI A;  4AGT A;  4AHA A;  4GZX A;  3P5B L;  4IFN X;  4C1Y A;  1NSC A;  1MS5 A;  3H6J A;  5B2D A;  3V1S A;  3G4H A;  3BYC A;  2ZZK A;  1ZGK A;  3A9H A;  4XMB A;  1VCU A;  4QNP A;  1N7D A;  2BF6 A;  1EUU A;  2F13 A;  2VK7 A;  3U0S A;  4WA5 A;  3IAX A;  1L7G A;  3INB A;  1KIT A;  4QN6 A;  3S2K A;  4K1K A;  5FNU A;  1IJQ A;  2F26 A;  1EUR A;  1C5K A;  1NCB N;  1W20 A;  2FPB A;  3WWA A;  1F8D A;  2IAP A;  4HHQ A;  3SOB B;  2ZWA A;  4GDJ A;  5GX4 A;  4KS1 A;  1B9T A;  4HHO A;  4B7J A;  1Z4V A;  2GHS A;  4CPL A;  4GNA A;  1N1Y A;  2BAT A;  2F28 A;  4MZA A;  4HZY A;  4D52 C;  1NPE A;  4QN4 A;  1CQ1 A;  4FPO B;  5GTQ A;  4K1I A;  4B7N A;  4MWL A;  4GNC A;  2W8B A;  4BBW A;  2YDT A;  1S1D A;  2QWC A;  3VNH A;  2SIL A;  4DGR A;  4FQ4 A;  3VNG A;  3G4E A;  4FOQ A;  2AEP A;  3OPZ A;  4XJ8 A;  1NSB A;  1INW A;  4FPH A; 
#chains in the Genus database with same CATH homology
 3L6V A;  4G3N A;  1WP5 A;  1ZI0 A;  3UC1 A;  1SUU A;  3NO0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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