3L86A

The crystal structure of smu.665 from streptococcus mutans ua159
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
245
structure length
245
Chain Sequence
MKDIIVIKIGGVASQQLSGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQVPVKKINGLRVTSKDDMVLVSHALLDLVGKNLQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHINKRVIEEFLENRQIPILASLGYSKEGDMLNINADYLATAVAVALAADKLILMTNVKGVLENGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAAGVGQVLIGDNLLTGTLITAD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Acetylglutamate kinase
publication title The Crystal Structure of smu.665 from Streptococcus mutans UA159
rcsb
source organism Streptococcus mutans
molecule tags Transferase
total genus 77
structure length 245
sequence length 245
ec nomenclature ec 2.7.2.8: Acetylglutamate kinase.
pdb deposition date 2009-12-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3l86A00
1YBDA 2W21A 3WWNA 1OH9A 4NDPB 4NDOB 4NDRB 2WXBA 4NDPA 4NDOA 2JI5A 2V4YA 2E9YA 3D2MA 2IJ9A 3NWYA 2AKOA 2CDQA 4I49A 2BNDA 3U6UA 4AB7A 2BRIA 3ZZFA 3ZZHA 3C20A 1OHBA 3LL9A 2R98A 3K4OA 3K4YA 3D2PA 2J0WA 3QVFA 3AAWA 2J5VA 3ZZGA 2HMFA 2OGXB 1E19A 1GS5A 4F6TB 4Q1TA 2J4KA 2BNFA 3TVIA 4NDRA 3EK5A 2OGXA 3K52A 4F6TA 4USJA 2V5HA 3KZFA 3WWMA 4JZ9A 2BUFA 2WE5A 4OLCA 2X2WA 3QVHA 3S6KA 1GSJA 3L76A 3T7BA 3QUNA 4AXSA 2AP9A 3AB2A 2J0XA 2VA1A 3S6HA 2BMUA 2BTYA 3D40A 3LL5A 2J4JA 2J5TA 3D41A 2RD5A 1OHAA 2WE4A 2BRXA 1Z9DA 3QUOA 2JJXA 4NDQB 3C1MA 3L86A 2BNEA 4JZ7A 4NDQA 4A7WA 3AB4A 3B8GA 2JJ4A 3LKKA 4KZTA 1B7BA 3K56A 2R8VA 3S6GA 3C1NA 4A7XA 3QURA 3EK6A 4JZ8A 3ZZIA 2A1FA 2J4LA
chains in the Genus database with same CATH superfamily
1YBDA 2W21A 3WWNA 1OH9A 4NDPB 4NDOB 4NDRB 2WXBA 4NDPA 4NDOA 2JI5A 2V4YA 2E9YA 3D2MA 2IJ9A 3NWYA 2AKOA 2CDQA 4I49A 2BNDA 3U6UA 4AB7A 2BRIA 3ZZFA 3ZZHA 3C20A 1OHBA 3LL9A 2R98A 3K4OA 3K4YA 3D2PA 2J0WA 3QVFA 3AAWA 2J5VA 3ZZGA 2HMFA 2OGXB 1E19A 1GS5A 4F6TB 4Q1TA 2J4KA 2BNFA 3TVIA 4NDRA 3EK5A 2OGXA 3K52A 4F6TA 4USJA 2V5HA 3KZFA 3WWMA 4JZ9A 2BUFA 2WE5A 4OLCA 2X2WA 3QVHA 3S6KA 1GSJA 3L76A 3T7BA 3QUNA 4AXSA 2AP9A 3AB2A 2J0XA 2VA1A 3S6HA 2BMUA 2BTYA 3D40A 3LL5A 2J4JA 2J5TA 3D41A 2RD5A 1OHAA 2WE4A 2BRXA 1Z9DA 3QUOA 2JJXA 4NDQB 3C1MA 3L86A 2BNEA 4JZ7A 4NDQA 4A7WA 3AB4A 3B8GA 2JJ4A 3LKKA 4KZTA 1B7BA 3K56A 2R8VA 3S6GA 3C1NA 4A7XA 3QURA 3EK6A 4JZ8A 3ZZIA 2A1FA 2J4LA
chains in the Genus database with same CATH topology
1YBDA 2W21A 3WWNA 1OH9A 4NDPB 4NDOB 4NDRB 2WXBA 4NDPA 4NDOA 2JI5A 2V4YA 2E9YA 3D2MA 2IJ9A 3NWYA 2AKOA 2CDQA 4I49A 2BNDA 3U6UA 4AB7A 2BRIA 3ZZFA 3ZZHA 3C20A 1OHBA 3LL9A 2R98A 3K4OA 3K4YA 3D2PA 2J0WA 3QVFA 3AAWA 2J5VA 3ZZGA 2HMFA 2OGXB 1E19A 1GS5A 4F6TB 4Q1TA 2J4KA 2BNFA 3TVIA 4NDRA 3EK5A 2OGXA 3K52A 4F6TA 4USJA 2V5HA 3KZFA 3WWMA 4JZ9A 2BUFA 2WE5A 4OLCA 2X2WA 3QVHA 3S6KA 1GSJA 3L76A 3T7BA 3QUNA 4AXSA 2AP9A 3AB2A 2J0XA 2VA1A 3S6HA 2BMUA 2BTYA 3D40A 3LL5A 2J4JA 2J5TA 3D41A 2RD5A 1OHAA 2WE4A 2BRXA 1Z9DA 3QUOA 2JJXA 4NDQB 3C1MA 3L86A 2BNEA 4JZ7A 4NDQA 4A7WA 3AB4A 3B8GA 2JJ4A 3LKKA 4KZTA 1B7BA 3K56A 2R8VA 3S6GA 3C1NA 4A7XA 3QURA 3EK6A 4JZ8A 3ZZIA 2A1FA 2J4LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YBD A;  2W21 A;  3WWN A;  1OH9 A;  4NDP B;  4NDO B;  4NDR B;  2WXB A;  4NDP A;  4NDO A;  2JI5 A;  2V4Y A;  2E9Y A;  3D2M A;  2IJ9 A;  3NWY A;  2AKO A;  2CDQ A;  4I49 A;  2BND A;  3U6U A;  4AB7 A;  2BRI A;  3ZZF A;  3ZZH A;  3C20 A;  1OHB A;  3LL9 A;  2R98 A;  3K4O A;  3K4Y A;  3D2P A;  2J0W A;  3QVF A;  3AAW A;  2J5V A;  3ZZG A;  2HMF A;  2OGX B;  1E19 A;  1GS5 A;  4F6T B;  4Q1T A;  2J4K A;  2BNF A;  3TVI A;  4NDR A;  3EK5 A;  2OGX A;  3K52 A;  4F6T A;  4USJ A;  2V5H A;  3KZF A;  3WWM A;  4JZ9 A;  2BUF A;  2WE5 A;  4OLC A;  2X2W A;  3QVH A;  3S6K A;  1GSJ A;  3L76 A;  3T7B A;  3QUN A;  4AXS A;  2AP9 A;  3AB2 A;  2J0X A;  2VA1 A;  3S6H A;  2BMU A;  2BTY A;  3D40 A;  3LL5 A;  2J4J A;  2J5T A;  3D41 A;  2RD5 A;  1OHA A;  2WE4 A;  2BRX A;  1Z9D A;  3QUO A;  2JJX A;  4NDQ B;  3C1M A;  3L86 A;  2BNE A;  4JZ7 A;  4NDQ A;  4A7W A;  3AB4 A;  3B8G A;  2JJ4 A;  3LKK A;  4KZT A;  1B7B A;  3K56 A;  2R8V A;  3S6G A;  3C1N A;  4A7X A;  3QUR A;  3EK6 A;  4JZ8 A;  3ZZI A;  2A1F A;  2J4L A; 
#chains in the Genus database with same CATH topology
 1YBD A;  2W21 A;  3WWN A;  1OH9 A;  4NDP B;  4NDO B;  4NDR B;  2WXB A;  4NDP A;  4NDO A;  2JI5 A;  2V4Y A;  2E9Y A;  3D2M A;  2IJ9 A;  3NWY A;  2AKO A;  2CDQ A;  4I49 A;  2BND A;  3U6U A;  4AB7 A;  2BRI A;  3ZZF A;  3ZZH A;  3C20 A;  1OHB A;  3LL9 A;  2R98 A;  3K4O A;  3K4Y A;  3D2P A;  2J0W A;  3QVF A;  3AAW A;  2J5V A;  3ZZG A;  2HMF A;  2OGX B;  1E19 A;  1GS5 A;  4F6T B;  4Q1T A;  2J4K A;  2BNF A;  3TVI A;  4NDR A;  3EK5 A;  2OGX A;  3K52 A;  4F6T A;  4USJ A;  2V5H A;  3KZF A;  3WWM A;  4JZ9 A;  2BUF A;  2WE5 A;  4OLC A;  2X2W A;  3QVH A;  3S6K A;  1GSJ A;  3L76 A;  3T7B A;  3QUN A;  4AXS A;  2AP9 A;  3AB2 A;  2J0X A;  2VA1 A;  3S6H A;  2BMU A;  2BTY A;  3D40 A;  3LL5 A;  2J4J A;  2J5T A;  3D41 A;  2RD5 A;  1OHA A;  2WE4 A;  2BRX A;  1Z9D A;  3QUO A;  2JJX A;  4NDQ B;  3C1M A;  3L86 A;  2BNE A;  4JZ7 A;  4NDQ A;  4A7W A;  3AB4 A;  3B8G A;  2JJ4 A;  3LKK A;  4KZT A;  1B7B A;  3K56 A;  2R8V A;  3S6G A;  3C1N A;  4A7X A;  3QUR A;  3EK6 A;  4JZ8 A;  3ZZI A;  2A1F A;  2J4L A; 
#chains in the Genus database with same CATH homology
 1YBD A;  2W21 A;  3WWN A;  1OH9 A;  4NDP B;  4NDO B;  4NDR B;  2WXB A;  4NDP A;  4NDO A;  2JI5 A;  2V4Y A;  2E9Y A;  3D2M A;  2IJ9 A;  3NWY A;  2AKO A;  2CDQ A;  4I49 A;  2BND A;  3U6U A;  4AB7 A;  2BRI A;  3ZZF A;  3ZZH A;  3C20 A;  1OHB A;  3LL9 A;  2R98 A;  3K4O A;  3K4Y A;  3D2P A;  2J0W A;  3QVF A;  3AAW A;  2J5V A;  3ZZG A;  2HMF A;  2OGX B;  1E19 A;  1GS5 A;  4F6T B;  4Q1T A;  2J4K A;  2BNF A;  3TVI A;  4NDR A;  3EK5 A;  2OGX A;  3K52 A;  4F6T A;  4USJ A;  2V5H A;  3KZF A;  3WWM A;  4JZ9 A;  2BUF A;  2WE5 A;  4OLC A;  2X2W A;  3QVH A;  3S6K A;  1GSJ A;  3L76 A;  3T7B A;  3QUN A;  4AXS A;  2AP9 A;  3AB2 A;  2J0X A;  2VA1 A;  3S6H A;  2BMU A;  2BTY A;  3D40 A;  3LL5 A;  2J4J A;  2J5T A;  3D41 A;  2RD5 A;  1OHA A;  2WE4 A;  2BRX A;  1Z9D A;  3QUO A;  2JJX A;  4NDQ B;  3C1M A;  3L86 A;  2BNE A;  4JZ7 A;  4NDQ A;  4A7W A;  3AB4 A;  3B8G A;  2JJ4 A;  3LKK A;  4KZT A;  1B7B A;  3K56 A;  2R8V A;  3S6G A;  3C1N A;  4A7X A;  3QUR A;  3EK6 A;  4JZ8 A;  3ZZI A;  2A1F A;  2J4L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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