3L86A

The crystal structure of smu.665 from streptococcus mutans ua159
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
245
structure length
245
Chain Sequence
MKDIIVIKIGGVASQQLSGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQVPVKKINGLRVTSKDDMVLVSHALLDLVGKNLQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHINKRVIEEFLENRQIPILASLGYSKEGDMLNINADYLATAVAVALAADKLILMTNVKGVLENGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAAGVGQVLIGDNLLTGTLITAD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Crystal Structure of smu.665 from Streptococcus mutans UA159
rcsb
source organism Streptococcus mutans
molecule tags Transferase
molecule keywords Acetylglutamate kinase
total genus 77
structure length 245
sequence length 245
ec nomenclature ec 2.7.2.8: Acetylglutamate kinase.
pdb deposition date 2009-12-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3l86A00
3LL9A 4I49A 3LL5A 1YBDA 4NDQA 3ZZHA 4NDOA 4Q1TA 3B8GA 3KZFA 3AAWA 3WWMA 2J4KA 3EK5A 2WE5A 2JJ4A 2WE4A 2JJXA 2X2WA 2JI5A 3QVHA 4F6TA 1OH9A 3QURA 2R98A 2BMUA 2R8VA 4JZ7A 2AKOA 4NDRA 2BRIA 4USJA 2J0XA 1OHBA 2E9YA 3QUNA 2WXBA 3S6KA 2RD5A 2J4LA 1OHAA 2J4JA 2J5TA 4NDQB 2OGXA 2IJ9A 2BNFA 3K4OA 1GS5A 2BNEA 3QVFA 3LKKA 2J5VA 3ZZGA 4F6TB 4AXSA 3AB4A 2BTYA 3C20A 3K56A 2V4YA 2HMFA 4A7XA 1B7BA 2BRXA 3L76A 4NDRB 3ZZFA 4OLCA 2OGXB 4JZ8A 3QUOA 3K4YA 3S6GA 4KZTA 1GSJA 3EK6A 2V5HA 3WWNA 4NDPA 3NWYA 3C1NA 3T7BA 3TVIA 3K52A 4AB7A 3S6HA 3D2MA 2A1FA 2BUFA 1Z9DA 2W21A 3AB2A 3U6UA 2BNDA 4NDOB 3L86A 3D41A 2VA1A 3C1MA 4JZ9A 2AP9A 3D2PA 2J0WA 1E19A 4NDPB 2CDQA 4A7WA 3D40A 3ZZIA
chains in the Genus database with same CATH superfamily
3LL9A 4I49A 3LL5A 1YBDA 4NDQA 3ZZHA 4NDOA 4Q1TA 3B8GA 3KZFA 3AAWA 3WWMA 2J4KA 3EK5A 2WE5A 2JJ4A 2WE4A 2JJXA 2X2WA 2JI5A 3QVHA 4F6TA 1OH9A 3QURA 2R98A 2BMUA 2R8VA 4JZ7A 2AKOA 4NDRA 2BRIA 4USJA 2J0XA 1OHBA 2E9YA 3QUNA 2WXBA 3S6KA 2RD5A 2J4LA 1OHAA 2J4JA 2J5TA 4NDQB 2OGXA 2IJ9A 2BNFA 3K4OA 1GS5A 2BNEA 3QVFA 3LKKA 2J5VA 3ZZGA 4F6TB 4AXSA 3AB4A 2BTYA 3C20A 3K56A 2V4YA 2HMFA 4A7XA 1B7BA 2BRXA 3L76A 4NDRB 3ZZFA 4OLCA 2OGXB 4JZ8A 3QUOA 3K4YA 3S6GA 4KZTA 1GSJA 3EK6A 2V5HA 3WWNA 4NDPA 3NWYA 3C1NA 3T7BA 3TVIA 3K52A 4AB7A 3S6HA 3D2MA 2A1FA 2BUFA 1Z9DA 2W21A 3AB2A 3U6UA 2BNDA 4NDOB 3L86A 3D41A 2VA1A 3C1MA 4JZ9A 2AP9A 3D2PA 2J0WA 1E19A 4NDPB 2CDQA 4A7WA 3D40A 3ZZIA
chains in the Genus database with same CATH topology
3LL9A 4I49A 3LL5A 1YBDA 4NDQA 3ZZHA 4NDOA 4Q1TA 3B8GA 3KZFA 3AAWA 3WWMA 2J4KA 3EK5A 2WE5A 2JJ4A 2WE4A 2JJXA 2X2WA 2JI5A 3QVHA 4F6TA 1OH9A 3QURA 2R98A 2BMUA 2R8VA 4JZ7A 2AKOA 4NDRA 2BRIA 4USJA 2J0XA 1OHBA 2E9YA 3QUNA 2WXBA 3S6KA 2RD5A 2J4LA 1OHAA 2J4JA 2J5TA 4NDQB 2OGXA 2IJ9A 2BNFA 3K4OA 1GS5A 2BNEA 3QVFA 3LKKA 2J5VA 3ZZGA 4F6TB 4AXSA 3AB4A 2BTYA 3C20A 3K56A 2V4YA 2HMFA 4A7XA 1B7BA 2BRXA 3L76A 4NDRB 3ZZFA 4OLCA 2OGXB 4JZ8A 3QUOA 3K4YA 3S6GA 4KZTA 1GSJA 3EK6A 2V5HA 3WWNA 4NDPA 3NWYA 3C1NA 3T7BA 3TVIA 3K52A 4AB7A 3S6HA 3D2MA 2A1FA 2BUFA 1Z9DA 2W21A 3AB2A 3U6UA 2BNDA 4NDOB 3L86A 3D41A 2VA1A 3C1MA 4JZ9A 2AP9A 3D2PA 2J0WA 1E19A 4NDPB 2CDQA 4A7WA 3D40A 3ZZIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LL9 A;  4I49 A;  3LL5 A;  1YBD A;  4NDQ A;  3ZZH A;  4NDO A;  4Q1T A;  3B8G A;  3KZF A;  3AAW A;  3WWM A;  2J4K A;  3EK5 A;  2WE5 A;  2JJ4 A;  2WE4 A;  2JJX A;  2X2W A;  2JI5 A;  3QVH A;  4F6T A;  1OH9 A;  3QUR A;  2R98 A;  2BMU A;  2R8V A;  4JZ7 A;  2AKO A;  4NDR A;  2BRI A;  4USJ A;  2J0X A;  1OHB A;  2E9Y A;  3QUN A;  2WXB A;  3S6K A;  2RD5 A;  2J4L A;  1OHA A;  2J4J A;  2J5T A;  4NDQ B;  2OGX A;  2IJ9 A;  2BNF A;  3K4O A;  1GS5 A;  2BNE A;  3QVF A;  3LKK A;  2J5V A;  3ZZG A;  4F6T B;  4AXS A;  3AB4 A;  2BTY A;  3C20 A;  3K56 A;  2V4Y A;  2HMF A;  4A7X A;  1B7B A;  2BRX A;  3L76 A;  4NDR B;  3ZZF A;  4OLC A;  2OGX B;  4JZ8 A;  3QUO A;  3K4Y A;  3S6G A;  4KZT A;  1GSJ A;  3EK6 A;  2V5H A;  3WWN A;  4NDP A;  3NWY A;  3C1N A;  3T7B A;  3TVI A;  3K52 A;  4AB7 A;  3S6H A;  3D2M A;  2A1F A;  2BUF A;  1Z9D A;  2W21 A;  3AB2 A;  3U6U A;  2BND A;  4NDO B;  3L86 A;  3D41 A;  2VA1 A;  3C1M A;  4JZ9 A;  2AP9 A;  3D2P A;  2J0W A;  1E19 A;  4NDP B;  2CDQ A;  4A7W A;  3D40 A;  3ZZI A; 
#chains in the Genus database with same CATH topology
 3LL9 A;  4I49 A;  3LL5 A;  1YBD A;  4NDQ A;  3ZZH A;  4NDO A;  4Q1T A;  3B8G A;  3KZF A;  3AAW A;  3WWM A;  2J4K A;  3EK5 A;  2WE5 A;  2JJ4 A;  2WE4 A;  2JJX A;  2X2W A;  2JI5 A;  3QVH A;  4F6T A;  1OH9 A;  3QUR A;  2R98 A;  2BMU A;  2R8V A;  4JZ7 A;  2AKO A;  4NDR A;  2BRI A;  4USJ A;  2J0X A;  1OHB A;  2E9Y A;  3QUN A;  2WXB A;  3S6K A;  2RD5 A;  2J4L A;  1OHA A;  2J4J A;  2J5T A;  4NDQ B;  2OGX A;  2IJ9 A;  2BNF A;  3K4O A;  1GS5 A;  2BNE A;  3QVF A;  3LKK A;  2J5V A;  3ZZG A;  4F6T B;  4AXS A;  3AB4 A;  2BTY A;  3C20 A;  3K56 A;  2V4Y A;  2HMF A;  4A7X A;  1B7B A;  2BRX A;  3L76 A;  4NDR B;  3ZZF A;  4OLC A;  2OGX B;  4JZ8 A;  3QUO A;  3K4Y A;  3S6G A;  4KZT A;  1GSJ A;  3EK6 A;  2V5H A;  3WWN A;  4NDP A;  3NWY A;  3C1N A;  3T7B A;  3TVI A;  3K52 A;  4AB7 A;  3S6H A;  3D2M A;  2A1F A;  2BUF A;  1Z9D A;  2W21 A;  3AB2 A;  3U6U A;  2BND A;  4NDO B;  3L86 A;  3D41 A;  2VA1 A;  3C1M A;  4JZ9 A;  2AP9 A;  3D2P A;  2J0W A;  1E19 A;  4NDP B;  2CDQ A;  4A7W A;  3D40 A;  3ZZI A; 
#chains in the Genus database with same CATH homology
 3LL9 A;  4I49 A;  3LL5 A;  1YBD A;  4NDQ A;  3ZZH A;  4NDO A;  4Q1T A;  3B8G A;  3KZF A;  3AAW A;  3WWM A;  2J4K A;  3EK5 A;  2WE5 A;  2JJ4 A;  2WE4 A;  2JJX A;  2X2W A;  2JI5 A;  3QVH A;  4F6T A;  1OH9 A;  3QUR A;  2R98 A;  2BMU A;  2R8V A;  4JZ7 A;  2AKO A;  4NDR A;  2BRI A;  4USJ A;  2J0X A;  1OHB A;  2E9Y A;  3QUN A;  2WXB A;  3S6K A;  2RD5 A;  2J4L A;  1OHA A;  2J4J A;  2J5T A;  4NDQ B;  2OGX A;  2IJ9 A;  2BNF A;  3K4O A;  1GS5 A;  2BNE A;  3QVF A;  3LKK A;  2J5V A;  3ZZG A;  4F6T B;  4AXS A;  3AB4 A;  2BTY A;  3C20 A;  3K56 A;  2V4Y A;  2HMF A;  4A7X A;  1B7B A;  2BRX A;  3L76 A;  4NDR B;  3ZZF A;  4OLC A;  2OGX B;  4JZ8 A;  3QUO A;  3K4Y A;  3S6G A;  4KZT A;  1GSJ A;  3EK6 A;  2V5H A;  3WWN A;  4NDP A;  3NWY A;  3C1N A;  3T7B A;  3TVI A;  3K52 A;  4AB7 A;  3S6H A;  3D2M A;  2A1F A;  2BUF A;  1Z9D A;  2W21 A;  3AB2 A;  3U6U A;  2BND A;  4NDO B;  3L86 A;  3D41 A;  2VA1 A;  3C1M A;  4JZ9 A;  2AP9 A;  3D2P A;  2J0W A;  1E19 A;  4NDP B;  2CDQ A;  4A7W A;  3D40 A;  3ZZI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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