3L89A

Human adenovirus type 21 knob in complex with domains scr1 and scr2 of cd46 (membrane cofactor protein, mcp)
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
193
structure length
183
Chain Sequence
DSINTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSSSKAFMPSTTAYPFNTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of adenovirus type 21 knob in complex with CD46 reveals key differences in receptor contacts among species B adenoviruses.
pubmed doi rcsb
molecule tags Viral protein/protein binding
source organism Human adenovirus 21
molecule keywords Fiber protein
total genus 35
structure length 183
sequence length 193
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date 2009-12-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00541 Adeno_knob Adenoviral fibre protein (knob domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.90.10 Mainly Beta Sandwich Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) Adenovirus pIV-related, attachment domain 3l89A00
4K6TA 3L89A 2WBVA 4LIYA 2J1KC 2BZVA 3CNCA 2J12A 4ATZA 3N0IA 2WGUA 4K6UA 2J2JA 2WBWA 4K6WA 2W9LC 1KACA 3EXVA 1KNBA 3L88A 1P6AA 4XQBA 3O8EA 3F0YA 2WGTA 1QHVA 3EXWA 1UXAA 4XQAA 1QIUA 1H7ZA 2O39A 1UXEA 2BZUA 4WYJA 4XL8A 4K6VA 1UXBA 3BQ4A 4ZDGA 1P69A 3QNDA 2WSTA 1NOBA 2QLKA
chains in the Genus database with same CATH superfamily
4K6TA 3ZPFA 4D63A 3L89A 2VTWA 2WBVA 4LIYA 2J1KC 2BZVA 3CNCA 2J12A 1KKEA 3EOYA 4ATZA 3N0IA 2WGUA 4GU4A 4K6UA 3S6XA 2JJLA 2J2JA 2WBWA 4K6WA 2VRSA 2W9LC 2OJ5A 4GU3A 1KACA 5MHSA 3EXVA 1KNBA 3L88A 1P6AA 4XQBA 3O8EA 3F0YA 4XC5A 2IUNA 3ZPEA 2BT8A 2WGTA 1QHVA 3EXWA 1UXAA 4XQAA 2BT7A 1QIUA 2BSFA 2OJ6A 1H7ZA 4ODBA 2IUMA 2O39A 1UXEA 2BZUA 4CW8A 4D62A 4WYJA 4XL8A 4K6VA 1UXBA 3BQ4A 4ZDGA 1P69A 3QNDA 2WSTA 1NOBA 2QLKA
chains in the Genus database with same CATH topology
4K6TA 3L89A 2WBVA 4LIYA 2J1KC 2BZVA 3CNCA 2J12A 4ATZA 3N0IA 2WGUA 4K6UA 2J2JA 2WBWA 4K6WA 2W9LC 1KACA 3EXVA 1KNBA 3L88A 1P6AA 4XQBA 3O8EA 3F0YA 2WGTA 1QHVA 3EXWA 1UXAA 4XQAA 1QIUA 1H7ZA 2O39A 1UXEA 2BZUA 4WYJA 4XL8A 4K6VA 1UXBA 3BQ4A 4ZDGA 1P69A 3QNDA 2WSTA 1NOBA 2QLKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4K6T A;  3L89 A;  2WBV A;  4LIY A;  2J1K C;  2BZV A;  3CNC A;  2J12 A;  4ATZ A;  3N0I A;  2WGU A;  4K6U A;  2J2J A;  2WBW A;  4K6W A;  2W9L C;  1KAC A;  3EXV A;  1KNB A;  3L88 A;  1P6A A;  4XQB A;  3O8E A;  3F0Y A;  2WGT A;  1QHV A;  3EXW A;  1UXA A;  4XQA A;  1QIU A;  1H7Z A;  2O39 A;  1UXE A;  2BZU A;  4WYJ A;  4XL8 A;  4K6V A;  1UXB A;  3BQ4 A;  4ZDG A;  1P69 A;  3QND A;  2WST A;  1NOB A;  2QLK A; 
#chains in the Genus database with same CATH topology
 4K6T A;  3ZPF A;  4D63 A;  3L89 A;  2VTW A;  2WBV A;  4LIY A;  2J1K C;  2BZV A;  3CNC A;  2J12 A;  1KKE A;  3EOY A;  4ATZ A;  3N0I A;  2WGU A;  4GU4 A;  4K6U A;  3S6X A;  2JJL A;  2J2J A;  2WBW A;  4K6W A;  2VRS A;  2W9L C;  2OJ5 A;  4GU3 A;  1KAC A;  5MHS A;  3EXV A;  1KNB A;  3L88 A;  1P6A A;  4XQB A;  3O8E A;  3F0Y A;  4XC5 A;  2IUN A;  3ZPE A;  2BT8 A;  2WGT A;  1QHV A;  3EXW A;  1UXA A;  4XQA A;  2BT7 A;  1QIU A;  2BSF A;  2OJ6 A;  1H7Z A;  4ODB A;  2IUM A;  2O39 A;  1UXE A;  2BZU A;  4CW8 A;  4D62 A;  4WYJ A;  4XL8 A;  4K6V A;  1UXB A;  3BQ4 A;  4ZDG A;  1P69 A;  3QND A;  2WST A;  1NOB A;  2QLK A; 
#chains in the Genus database with same CATH homology
 4K6T A;  3L89 A;  2WBV A;  4LIY A;  2J1K C;  2BZV A;  3CNC A;  2J12 A;  4ATZ A;  3N0I A;  2WGU A;  4K6U A;  2J2J A;  2WBW A;  4K6W A;  2W9L C;  1KAC A;  3EXV A;  1KNB A;  3L88 A;  1P6A A;  4XQB A;  3O8E A;  3F0Y A;  2WGT A;  1QHV A;  3EXW A;  1UXA A;  4XQA A;  1QIU A;  1H7Z A;  2O39 A;  1UXE A;  2BZU A;  4WYJ A;  4XL8 A;  4K6V A;  1UXB A;  3BQ4 A;  4ZDG A;  1P69 A;  3QND A;  2WST A;  1NOB A;  2QLK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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