3L8UA

Crystal structure of smu.1707c, a putative rrna methyltransferase from streptococcus mutans ua159
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
Knots found
sequence length
161
structure length
154
Chain Sequence
LGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMYWDLDVHFYDSLNDFMNICSGKLHLITKFANKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSEKALRIPVNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative rRNA methylase
publication title Crystal structure of SMU.1707c, a putative rRNA methyltransferase from streptococcus mutans UA159
rcsb
source organism Streptococcus mutans
molecule tags Transferase
total genus 46
structure length 154
sequence length 161
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2010-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3l8uA00
1UAMA 3AIAA 4YVIA 4YPYA 1Z85A 1ZJRA 4H3YA 4YQBA 4CNDA 3KW2A 3NK6A 4L69A 5GMBA 2QWVA 4RG1A 4CNEA 3OIIA 4KGNA 1UAJA 4YQAA 5FAIA 4YPXA 5D9FA 4XBOA 4YVGA 2EGVA 1UAKA 1GZ0A 3L8UA 2HA8A 4FAKA 2EGWA 4MCBA 1NXZA 3OINA 5GM8A 4YQQA 4YQ4A 2Z0YA 4YQNA 4YQGA 3IEFA 4YQKA 4YQ5A 1NS5A 1O6DA 4CNGA 2V3KA 1OY5A 1TO0A 3ILKA 3IC6A 4PZKA 4YVHA 3GYQA 4YQSA 4YQ8A 1VH0A 4MCCA 4YQLA 4IG6A 1J85A 3KY7A 4X3MA 4CNFA 4YQIA 4H3ZA 1VHKA 4YVJA 2I6DA 1V2XA 4YQ0A 4YQCA 1MXIA 3N4JA 3BBEA 1V6ZA 3ONPA 4KDZA 4JALA 4X3LA 4E8BA 5GMCA 2CX8A 4YQDA 5CO4A 4YQ6A 3BBDA 4YQ2A 3N4KA 4YPZA 4MCDA 2YY8A 3O7BA 3KTYA 4YQ3A 4YQ1A 3AI9X 3E5YA 1P9PA 1UALA 4J3CA 2O3AA 1X7OA 4YQRA 4YQTA 4YQOA 4YQ9A 1K3RA 4YQJA 3DCMX 4YQ7A 1VHYA 4YQPA 3KNUA 2QMMA 2V3JA 4JAKA 1IPAA 3QUVA 4YVKA 3AXZA 4YPWA 3NK7A 1X7PA 3OIJA 3BBHA
chains in the Genus database with same CATH superfamily
1UAMA 3AIAA 4YVIA 4YPYA 1Z85A 1ZJRA 4H3YA 4YQBA 4CNDA 3KW2A 3NK6A 4L69A 5GMBA 2QWVA 4RG1A 4CNEA 3OIIA 4KGNA 1UAJA 4YQAA 5FAIA 4YPXA 5D9FA 4JWGA 4XBOA 4YVGA 2EGVA 1UAKA 1GZ0A 3L8UA 2HA8A 4FAKA 2EGWA 4MCBA 1NXZA 3OINA 5GM8A 4YQQA 4YQ4A 2Z0YA 4YQNA 4YQGA 3IEFA 4YQKA 4YQ5A 1NS5A 1O6DA 4CNGA 2V3KA 1OY5A 1TO0A 3ILKA 3IC6A 4PZKA 4YVHA 3GYQA 4YQSA 4YQ8A 1VH0A 4MCCA 4YQLA 4IG6A 1J85A 3KY7A 4X3MA 4CNFA 4YQIA 4H3ZA 1VHKA 4YVJA 2I6DA 1V2XA 4YQ0A 4YQCA 1MXIA 3N4JA 3BBEA 1V6ZA 3ONPA 4KDZA 4JALA 4X3LA 4E8BA 5GMCA 2CX8A 4YQDA 5CO4A 4YQ6A 4JWHA 3BBDA 4YQ2A 3N4KA 4YPZA 4MCDA 2YY8A 3O7BA 3KTYA 4YQ3A 4JWJA 4FMWA 4YQ1A 3AI9X 3E5YA 1P9PA 1UALA 4J3CA 2O3AA 1X7OA 4YQRA 4YQTA 4YQOA 4YQ9A 1K3RA 4YQJA 3DCMX 4YQ7A 1VHYA 4YQPA 3KNUA 2QMMA 2V3JA 4JAKA 1IPAA 3QUVA 4JWFA 4YVKA 3AXZA 4YPWA 3NK7A 1X7PA 3OIJA 3BBHA
chains in the Genus database with same CATH topology
1UAMA 3AIAA 4YVIA 4YPYA 1Z85A 1ZJRA 4H3YA 4YQBA 4CNDA 3KW2A 3NK6A 4L69A 5GMBA 2QWVA 4RG1A 4CNEA 3OIIA 4KGNA 1UAJA 4YQAA 5FAIA 4YPXA 5D9FA 4JWGA 4XBOA 4YVGA 2EGVA 1UAKA 1GZ0A 3L8UA 2HA8A 4FAKA 2EGWA 4MCBA 1NXZA 3OINA 5GM8A 4YQQA 4YQ4A 2Z0YA 4YQNA 4YQGA 3IEFA 4YQKA 4YQ5A 1NS5A 1O6DA 4CNGA 2V3KA 1OY5A 1TO0A 3ILKA 3IC6A 4PZKA 4YVHA 3GYQA 4YQSA 4YQ8A 1VH0A 4MCCA 4YQLA 4IG6A 1J85A 3KY7A 4X3MA 4CNFA 4YQIA 4H3ZA 1VHKA 4YVJA 2I6DA 1V2XA 4YQ0A 4YQCA 1MXIA 3N4JA 3BBEA 1V6ZA 3ONPA 4KDZA 4JALA 4X3LA 4E8BA 5GMCA 2CX8A 4YQDA 5CO4A 4YQ6A 4JWHA 3BBDA 4YQ2A 3N4KA 4YPZA 4MCDA 2YY8A 3O7BA 3KTYA 4YQ3A 4JWJA 4FMWA 4YQ1A 3AI9X 3E5YA 1P9PA 1UALA 4J3CA 2O3AA 1X7OA 4YQRA 4YQTA 4YQOA 4YQ9A 1K3RA 4YQJA 3DCMX 4YQ7A 1VHYA 4YQPA 3KNUA 2QMMA 2V3JA 4JAKA 1IPAA 3QUVA 4JWFA 4YVKA 3AXZA 4YPWA 3NK7A 1X7PA 3OIJA 3BBHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UAM A;  3AIA A;  4YVI A;  4YPY A;  1Z85 A;  1ZJR A;  4H3Y A;  4YQB A;  4CND A;  3KW2 A;  3NK6 A;  4L69 A;  5GMB A;  2QWV A;  4RG1 A;  4CNE A;  3OII A;  4KGN A;  1UAJ A;  4YQA A;  5FAI A;  4YPX A;  5D9F A;  4XBO A;  4YVG A;  2EGV A;  1UAK A;  1GZ0 A;  3L8U A;  2HA8 A;  4FAK A;  2EGW A;  4MCB A;  1NXZ A;  3OIN A;  5GM8 A;  4YQQ A;  4YQ4 A;  2Z0Y A;  4YQN A;  4YQG A;  3IEF A;  4YQK A;  4YQ5 A;  1NS5 A;  1O6D A;  4CNG A;  2V3K A;  1OY5 A;  1TO0 A;  3ILK A;  3IC6 A;  4PZK A;  4YVH A;  3GYQ A;  4YQS A;  4YQ8 A;  1VH0 A;  4MCC A;  4YQL A;  4IG6 A;  1J85 A;  3KY7 A;  4X3M A;  4CNF A;  4YQI A;  4H3Z A;  1VHK A;  4YVJ A;  2I6D A;  1V2X A;  4YQ0 A;  4YQC A;  1MXI A;  3N4J A;  3BBE A;  1V6Z A;  3ONP A;  4KDZ A;  4JAL A;  4X3L A;  4E8B A;  5GMC A;  2CX8 A;  4YQD A;  5CO4 A;  4YQ6 A;  3BBD A;  4YQ2 A;  3N4K A;  4YPZ A;  4MCD A;  2YY8 A;  3O7B A;  3KTY A;  4YQ3 A;  4YQ1 A;  3AI9 X;  3E5Y A;  1P9P A;  1UAL A;  4J3C A;  2O3A A;  1X7O A;  4YQR A;  4YQT A;  4YQO A;  4YQ9 A;  1K3R A;  4YQJ A;  3DCM X;  4YQ7 A;  1VHY A;  4YQP A;  3KNU A;  2QMM A;  2V3J A;  4JAK A;  1IPA A;  3QUV A;  4YVK A;  3AXZ A;  4YPW A;  3NK7 A;  1X7P A;  3OIJ A;  3BBH A; 
#chains in the Genus database with same CATH topology
 1UAM A;  3AIA A;  4YVI A;  4YPY A;  1Z85 A;  1ZJR A;  4H3Y A;  4YQB A;  4CND A;  3KW2 A;  3NK6 A;  4L69 A;  5GMB A;  2QWV A;  4RG1 A;  4CNE A;  3OII A;  4KGN A;  1UAJ A;  4YQA A;  5FAI A;  4YPX A;  5D9F A;  4JWG A;  4XBO A;  4YVG A;  2EGV A;  1UAK A;  1GZ0 A;  3L8U A;  2HA8 A;  4FAK A;  2EGW A;  4MCB A;  1NXZ A;  3OIN A;  5GM8 A;  4YQQ A;  4YQ4 A;  2Z0Y A;  4YQN A;  4YQG A;  3IEF A;  4YQK A;  4YQ5 A;  1NS5 A;  1O6D A;  4CNG A;  2V3K A;  1OY5 A;  1TO0 A;  3ILK A;  3IC6 A;  4PZK A;  4YVH A;  3GYQ A;  4YQS A;  4YQ8 A;  1VH0 A;  4MCC A;  4YQL A;  4IG6 A;  1J85 A;  3KY7 A;  4X3M A;  4CNF A;  4YQI A;  4H3Z A;  1VHK A;  4YVJ A;  2I6D A;  1V2X A;  4YQ0 A;  4YQC A;  1MXI A;  3N4J A;  3BBE A;  1V6Z A;  3ONP A;  4KDZ A;  4JAL A;  4X3L A;  4E8B A;  5GMC A;  2CX8 A;  4YQD A;  5CO4 A;  4YQ6 A;  4JWH A;  3BBD A;  4YQ2 A;  3N4K A;  4YPZ A;  4MCD A;  2YY8 A;  3O7B A;  3KTY A;  4YQ3 A;  4JWJ A;  4FMW A;  4YQ1 A;  3AI9 X;  3E5Y A;  1P9P A;  1UAL A;  4J3C A;  2O3A A;  1X7O A;  4YQR A;  4YQT A;  4YQO A;  4YQ9 A;  1K3R A;  4YQJ A;  3DCM X;  4YQ7 A;  1VHY A;  4YQP A;  3KNU A;  2QMM A;  2V3J A;  4JAK A;  1IPA A;  3QUV A;  4JWF A;  4YVK A;  3AXZ A;  4YPW A;  3NK7 A;  1X7P A;  3OIJ A;  3BBH A; 
#chains in the Genus database with same CATH homology
 1UAM A;  3AIA A;  4YVI A;  4YPY A;  1Z85 A;  1ZJR A;  4H3Y A;  4YQB A;  4CND A;  3KW2 A;  3NK6 A;  4L69 A;  5GMB A;  2QWV A;  4RG1 A;  4CNE A;  3OII A;  4KGN A;  1UAJ A;  4YQA A;  5FAI A;  4YPX A;  5D9F A;  4JWG A;  4XBO A;  4YVG A;  2EGV A;  1UAK A;  1GZ0 A;  3L8U A;  2HA8 A;  4FAK A;  2EGW A;  4MCB A;  1NXZ A;  3OIN A;  5GM8 A;  4YQQ A;  4YQ4 A;  2Z0Y A;  4YQN A;  4YQG A;  3IEF A;  4YQK A;  4YQ5 A;  1NS5 A;  1O6D A;  4CNG A;  2V3K A;  1OY5 A;  1TO0 A;  3ILK A;  3IC6 A;  4PZK A;  4YVH A;  3GYQ A;  4YQS A;  4YQ8 A;  1VH0 A;  4MCC A;  4YQL A;  4IG6 A;  1J85 A;  3KY7 A;  4X3M A;  4CNF A;  4YQI A;  4H3Z A;  1VHK A;  4YVJ A;  2I6D A;  1V2X A;  4YQ0 A;  4YQC A;  1MXI A;  3N4J A;  3BBE A;  1V6Z A;  3ONP A;  4KDZ A;  4JAL A;  4X3L A;  4E8B A;  5GMC A;  2CX8 A;  4YQD A;  5CO4 A;  4YQ6 A;  4JWH A;  3BBD A;  4YQ2 A;  3N4K A;  4YPZ A;  4MCD A;  2YY8 A;  3O7B A;  3KTY A;  4YQ3 A;  4JWJ A;  4FMW A;  4YQ1 A;  3AI9 X;  3E5Y A;  1P9P A;  1UAL A;  4J3C A;  2O3A A;  1X7O A;  4YQR A;  4YQT A;  4YQO A;  4YQ9 A;  1K3R A;  4YQJ A;  3DCM X;  4YQ7 A;  1VHY A;  4YQP A;  3KNU A;  2QMM A;  2V3J A;  4JAK A;  1IPA A;  3QUV A;  4JWF A;  4YVK A;  3AXZ A;  4YPW A;  3NK7 A;  1X7P A;  3OIJ A;  3BBH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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