3L8UA

Crystal structure of smu.1707c, a putative rrna methyltransferase from streptococcus mutans ua159
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
Knots found
sequence length
161
structure length
154
Chain Sequence
b'LGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMYWDLDVHFYDSLNDFMNICSGKLHLITKFANKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSEKALRIPVNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative rRNA methylase
publication title Crystal structure of SMU.1707c, a putative rRNA methyltransferase from streptococcus mutans UA159
rcsb
source organism Streptococcus mutans
molecule tags Transferase
total genus 46
structure length 154
sequence length 161
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2010-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3l8uA00
1NS5A 4YPWA 4YQ0A 4YVKA 4X3MA 3KW2A 4JALA 4YQPA 2EGWA 4YQGA 4YQ3A 4H3YA 4YVIA 1UAMA 3OIIA 3AXZA 1ZJRA 3E5YA 3KY7A 4L69A 4YQ6A 4YPXA 2EGVA 1V2XA 3KTYA 1V6ZA 3ONPA 3BBHA 1Z85A 5GMCA 4YQ1A 1GZ0A 3N4KA 2V3KA 3BBEA 1UAJA 1VHKA 4XBOA 5D9FA 4RG1A 4YQKA 5FAIA 5CO4A 1VH0A 4MCDA 4E8BA 2V3JA 1NXZA 2CX8A 4YQ5A 5GMBA 4YQDA 2O3AA 3IEFA 3N4JA 4YQ2A 4YQ7A 1X7PA 3NK7A 4YVHA 3L8UA 4YQIA 4YQQA 4J3CA 3AIAA 4YPYA 1J85A 4KGNA 4YQJA 4PZKA 4X3LA 4YQBA 4YQLA 4YVJA 2HA8A 4CNGA 3OIJA 4MCBA 4YQNA 3ILKA 4IG6A 4JAKA 4MCCA 1MXIA 1K3RA 4YQRA 2QMMA 1OY5A 3O7BA 4YQ4A 2Z0YA 3GYQA 4YVGA 1UAKA 4YQSA 3OINA 4YQTA 4YPZA 4H3ZA 4KDZA 3BBDA 3QUVA 1X7OA 4FAKA 3DCMX 2YY8A 3IC6A 1TO0A 4YQCA 4YQAA 2QWVA 3KNUA 3AI9X 4YQOA 1O6DA 1P9PA 4CNEA 4CNFA 4YQ8A 5GM8A 4YQ9A 4CNDA 1IPAA 1UALA 3NK6A 1VHYA 2I6DA
chains in the Genus database with same CATH superfamily
1NS5A 4YPWA 4YQ0A 4YVKA 4X3MA 3KW2A 4JALA 4YQPA 2EGWA 4YQGA 4JWHA 4YQ3A 4H3YA 4YVIA 1UAMA 3OIIA 3AXZA 1ZJRA 3E5YA 3KY7A 4L69A 4YQ6A 4YPXA 2EGVA 1V2XA 3KTYA 1V6ZA 3ONPA 3BBHA 1Z85A 5GMCA 4YQ1A 1GZ0A 3N4KA 2V3KA 3BBEA 1UAJA 1VHKA 4XBOA 5D9FA 4FMWA 4RG1A 4YQKA 4JWFA 5FAIA 5CO4A 1VH0A 4MCDA 4E8BA 2V3JA 1NXZA 2CX8A 4YQ5A 5GMBA 4YQDA 2O3AA 3IEFA 3N4JA 4YQ2A 4YQ7A 1X7PA 3NK7A 4YVHA 3L8UA 4YQIA 4YQQA 4J3CA 3AIAA 4YPYA 1J85A 4KGNA 4YQJA 4PZKA 4X3LA 4YQBA 4YQLA 4YVJA 2HA8A 4CNGA 3OIJA 4MCBA 4YQNA 4JWGA 3ILKA 4IG6A 4JAKA 4MCCA 1MXIA 1K3RA 4YQRA 2QMMA 1OY5A 3O7BA 4YQ4A 2Z0YA 3GYQA 4YVGA 1UAKA 4YQSA 3OINA 4YQTA 4YPZA 4H3ZA 4KDZA 3BBDA 3QUVA 1X7OA 4FAKA 3DCMX 2YY8A 3IC6A 1TO0A 4YQCA 4YQAA 2QWVA 3KNUA 3AI9X 4YQOA 1O6DA 1P9PA 4JWJA 4CNEA 4CNFA 4YQ8A 5GM8A 4YQ9A 4CNDA 1IPAA 1UALA 3NK6A 1VHYA 2I6DA
chains in the Genus database with same CATH topology
1NS5A 4YPWA 4YQ0A 4YVKA 4X3MA 3KW2A 4JALA 4YQPA 2EGWA 4YQGA 4JWHA 4YQ3A 4H3YA 4YVIA 1UAMA 3OIIA 3AXZA 1ZJRA 3E5YA 3KY7A 4L69A 4YQ6A 4YPXA 2EGVA 1V2XA 3KTYA 1V6ZA 3ONPA 3BBHA 1Z85A 5GMCA 4YQ1A 1GZ0A 3N4KA 2V3KA 3BBEA 1UAJA 1VHKA 4XBOA 5D9FA 4FMWA 4RG1A 4YQKA 4JWFA 5FAIA 5CO4A 1VH0A 4MCDA 4E8BA 2V3JA 1NXZA 2CX8A 4YQ5A 5GMBA 4YQDA 2O3AA 3IEFA 3N4JA 4YQ2A 4YQ7A 1X7PA 3NK7A 4YVHA 3L8UA 4YQIA 4YQQA 4J3CA 3AIAA 4YPYA 1J85A 4KGNA 4YQJA 4PZKA 4X3LA 4YQBA 4YQLA 4YVJA 2HA8A 4CNGA 3OIJA 4MCBA 4YQNA 4JWGA 3ILKA 4IG6A 4JAKA 4MCCA 1MXIA 1K3RA 4YQRA 2QMMA 1OY5A 3O7BA 4YQ4A 2Z0YA 3GYQA 4YVGA 1UAKA 4YQSA 3OINA 4YQTA 4YPZA 4H3ZA 4KDZA 3BBDA 3QUVA 1X7OA 4FAKA 3DCMX 2YY8A 3IC6A 1TO0A 4YQCA 4YQAA 2QWVA 3KNUA 3AI9X 4YQOA 1O6DA 1P9PA 4JWJA 4CNEA 4CNFA 4YQ8A 5GM8A 4YQ9A 4CNDA 1IPAA 1UALA 3NK6A 1VHYA 2I6DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NS5 A;  4YPW A;  4YQ0 A;  4YVK A;  4X3M A;  3KW2 A;  4JAL A;  4YQP A;  2EGW A;  4YQG A;  4YQ3 A;  4H3Y A;  4YVI A;  1UAM A;  3OII A;  3AXZ A;  1ZJR A;  3E5Y A;  3KY7 A;  4L69 A;  4YQ6 A;  4YPX A;  2EGV A;  1V2X A;  3KTY A;  1V6Z A;  3ONP A;  3BBH A;  1Z85 A;  5GMC A;  4YQ1 A;  1GZ0 A;  3N4K A;  2V3K A;  3BBE A;  1UAJ A;  1VHK A;  4XBO A;  5D9F A;  4RG1 A;  4YQK A;  5FAI A;  5CO4 A;  1VH0 A;  4MCD A;  4E8B A;  2V3J A;  1NXZ A;  2CX8 A;  4YQ5 A;  5GMB A;  4YQD A;  2O3A A;  3IEF A;  3N4J A;  4YQ2 A;  4YQ7 A;  1X7P A;  3NK7 A;  4YVH A;  3L8U A;  4YQI A;  4YQQ A;  4J3C A;  3AIA A;  4YPY A;  1J85 A;  4KGN A;  4YQJ A;  4PZK A;  4X3L A;  4YQB A;  4YQL A;  4YVJ A;  2HA8 A;  4CNG A;  3OIJ A;  4MCB A;  4YQN A;  3ILK A;  4IG6 A;  4JAK A;  4MCC A;  1MXI A;  1K3R A;  4YQR A;  2QMM A;  1OY5 A;  3O7B A;  4YQ4 A;  2Z0Y A;  3GYQ A;  4YVG A;  1UAK A;  4YQS A;  3OIN A;  4YQT A;  4YPZ A;  4H3Z A;  4KDZ A;  3BBD A;  3QUV A;  1X7O A;  4FAK A;  3DCM X;  2YY8 A;  3IC6 A;  1TO0 A;  4YQC A;  4YQA A;  2QWV A;  3KNU A;  3AI9 X;  4YQO A;  1O6D A;  1P9P A;  4CNE A;  4CNF A;  4YQ8 A;  5GM8 A;  4YQ9 A;  4CND A;  1IPA A;  1UAL A;  3NK6 A;  1VHY A;  2I6D A; 
#chains in the Genus database with same CATH topology
 1NS5 A;  4YPW A;  4YQ0 A;  4YVK A;  4X3M A;  3KW2 A;  4JAL A;  4YQP A;  2EGW A;  4YQG A;  4JWH A;  4YQ3 A;  4H3Y A;  4YVI A;  1UAM A;  3OII A;  3AXZ A;  1ZJR A;  3E5Y A;  3KY7 A;  4L69 A;  4YQ6 A;  4YPX A;  2EGV A;  1V2X A;  3KTY A;  1V6Z A;  3ONP A;  3BBH A;  1Z85 A;  5GMC A;  4YQ1 A;  1GZ0 A;  3N4K A;  2V3K A;  3BBE A;  1UAJ A;  1VHK A;  4XBO A;  5D9F A;  4FMW A;  4RG1 A;  4YQK A;  4JWF A;  5FAI A;  5CO4 A;  1VH0 A;  4MCD A;  4E8B A;  2V3J A;  1NXZ A;  2CX8 A;  4YQ5 A;  5GMB A;  4YQD A;  2O3A A;  3IEF A;  3N4J A;  4YQ2 A;  4YQ7 A;  1X7P A;  3NK7 A;  4YVH A;  3L8U A;  4YQI A;  4YQQ A;  4J3C A;  3AIA A;  4YPY A;  1J85 A;  4KGN A;  4YQJ A;  4PZK A;  4X3L A;  4YQB A;  4YQL A;  4YVJ A;  2HA8 A;  4CNG A;  3OIJ A;  4MCB A;  4YQN A;  4JWG A;  3ILK A;  4IG6 A;  4JAK A;  4MCC A;  1MXI A;  1K3R A;  4YQR A;  2QMM A;  1OY5 A;  3O7B A;  4YQ4 A;  2Z0Y A;  3GYQ A;  4YVG A;  1UAK A;  4YQS A;  3OIN A;  4YQT A;  4YPZ A;  4H3Z A;  4KDZ A;  3BBD A;  3QUV A;  1X7O A;  4FAK A;  3DCM X;  2YY8 A;  3IC6 A;  1TO0 A;  4YQC A;  4YQA A;  2QWV A;  3KNU A;  3AI9 X;  4YQO A;  1O6D A;  1P9P A;  4JWJ A;  4CNE A;  4CNF A;  4YQ8 A;  5GM8 A;  4YQ9 A;  4CND A;  1IPA A;  1UAL A;  3NK6 A;  1VHY A;  2I6D A; 
#chains in the Genus database with same CATH homology
 1NS5 A;  4YPW A;  4YQ0 A;  4YVK A;  4X3M A;  3KW2 A;  4JAL A;  4YQP A;  2EGW A;  4YQG A;  4JWH A;  4YQ3 A;  4H3Y A;  4YVI A;  1UAM A;  3OII A;  3AXZ A;  1ZJR A;  3E5Y A;  3KY7 A;  4L69 A;  4YQ6 A;  4YPX A;  2EGV A;  1V2X A;  3KTY A;  1V6Z A;  3ONP A;  3BBH A;  1Z85 A;  5GMC A;  4YQ1 A;  1GZ0 A;  3N4K A;  2V3K A;  3BBE A;  1UAJ A;  1VHK A;  4XBO A;  5D9F A;  4FMW A;  4RG1 A;  4YQK A;  4JWF A;  5FAI A;  5CO4 A;  1VH0 A;  4MCD A;  4E8B A;  2V3J A;  1NXZ A;  2CX8 A;  4YQ5 A;  5GMB A;  4YQD A;  2O3A A;  3IEF A;  3N4J A;  4YQ2 A;  4YQ7 A;  1X7P A;  3NK7 A;  4YVH A;  3L8U A;  4YQI A;  4YQQ A;  4J3C A;  3AIA A;  4YPY A;  1J85 A;  4KGN A;  4YQJ A;  4PZK A;  4X3L A;  4YQB A;  4YQL A;  4YVJ A;  2HA8 A;  4CNG A;  3OIJ A;  4MCB A;  4YQN A;  4JWG A;  3ILK A;  4IG6 A;  4JAK A;  4MCC A;  1MXI A;  1K3R A;  4YQR A;  2QMM A;  1OY5 A;  3O7B A;  4YQ4 A;  2Z0Y A;  3GYQ A;  4YVG A;  1UAK A;  4YQS A;  3OIN A;  4YQT A;  4YPZ A;  4H3Z A;  4KDZ A;  3BBD A;  3QUV A;  1X7O A;  4FAK A;  3DCM X;  2YY8 A;  3IC6 A;  1TO0 A;  4YQC A;  4YQA A;  2QWV A;  3KNU A;  3AI9 X;  4YQO A;  1O6D A;  1P9P A;  4JWJ A;  4CNE A;  4CNF A;  4YQ8 A;  5GM8 A;  4YQ9 A;  4CND A;  1IPA A;  1UAL A;  3NK6 A;  1VHY A;  2I6D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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