3L91A

Structure of pseudomonas aerugionsa pvdq bound to octanoate
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
164
structure length
164
Chain Sequence
TGLAADIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREADGKTTSCLGQPWLRAIATDDLLRLTRRLLVEGGVGQFADALVAAAPPGAEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural characterization and high-throughput screening of inhibitors of PvdQ, an NTN hydrolase involved in pyoverdine synthesis.
pubmed doi rcsb
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
molecule keywords Acyl-homoserine lactone acylase pvdQ subunit alpha
total genus 55
structure length 164
sequence length 164
ec nomenclature ec 3.5.1.97: Acyl-homoserine-lactone acylase.
pdb deposition date 2010-01-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 3l91A00
1AJQA 1K7DA 2WYEA 1JVZA 3SRCA 4PEMA 1JX9A 1AI6A 3L91A 4BTHA 1JW0A 1OR0A 3JTQA 1AJPA 4E55A 1E3AA 1GKFA 1K5SA 1GM9A 1H2GA 1KEHA 3JTRA 1FM2A 2WYCA 4WKTA 1GM8A 4YFAA 4K2GA 1AI5A 1GHDA 4WKSA 1GK0A 1GM7A 4K2FA 3SRAA 1GK9A 4E56A 2ADVA 1K5QA 3K3WA 2AE3A 3L94A 1AJNA 1AI7A 1FXHA 1PNMA 1PNKA 3ML0A 4HSRA 1GK1A 4YF9A 4M1JA 2AE4A 4E57A 4HSTA 1CP9A 1PNLA 2WYBA 4YFBA 4WKVA 3SRBA 1FXVA 4PELA 4WKUA 1AI4A 2WYDA 3S8RA 1KECA 2AE5A
chains in the Genus database with same CATH superfamily
1AJQA 1K7DA 2WYEA 1JVZA 3SRCA 4PEMA 1JX9A 1AI6A 3L91A 4BTHA 1JW0A 1OR0A 3JTQA 1AJPA 4E55A 1E3AA 1GKFA 1K5SA 1GM9A 1H2GA 1KEHA 3JTRA 3FGTA 1FM2A 2WYCA 4WKTA 1GM8A 4YFAA 4BWCA 4K2GA 1AI5A 1GHDA 4WKSA 1GK0A 1GM7A 4K2FA 3SRAA 1GK9A 4E56A 2ADVA 1K5QA 3K3WA 2AE3A 3L94A 1AJNA 1AI7A 1FXHA 1PNMA 1PNKA 3ML0A 4HSRA 1GK1A 3FGRA 4YF9A 4M1JA 2AE4A 4E57A 4HSTA 1CP9A 1PNLA 2WYBA 4YFBA 4WKVA 3SRBA 1FXVA 4PELA 4WKUA 1AI4A 2WYDA 3S8RA 1KECA 2AE5A
chains in the Genus database with same CATH topology
1AJQA 1K7DA 2WYEA 1JVZA 3SRCA 4PEMA 1JX9A 1AI6A 3L91A 4BTHA 1JW0A 1OR0A 3JTQA 1AJPA 4E55A 1E3AA 1GKFA 1K5SA 1GM9A 1H2GA 1KEHA 3JTRA 1FM2A 2WYCA 4WKTA 1GM8A 4YFAA 4K2GA 1AI5A 1GHDA 4WKSA 1GK0A 1GM7A 4K2FA 3SRAA 1GK9A 4E56A 2ADVA 1K5QA 3K3WA 2AE3A 3L94A 1AJNA 1AI7A 1FXHA 1PNMA 1PNKA 3ML0A 4HSRA 1GK1A 4YF9A 4M1JA 2AE4A 4E57A 4HSTA 1CP9A 1PNLA 2WYBA 4YFBA 4WKVA 3SRBA 1FXVA 4PELA 4WKUA 1AI4A 2WYDA 3S8RA 1KECA 2AE5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AJQ A;  1K7D A;  2WYE A;  1JVZ A;  3SRC A;  4PEM A;  1JX9 A;  1AI6 A;  3L91 A;  4BTH A;  1JW0 A;  1OR0 A;  3JTQ A;  1AJP A;  4E55 A;  1E3A A;  1GKF A;  1K5S A;  1GM9 A;  1H2G A;  1KEH A;  3JTR A;  1FM2 A;  2WYC A;  4WKT A;  1GM8 A;  4YFA A;  4K2G A;  1AI5 A;  1GHD A;  4WKS A;  1GK0 A;  1GM7 A;  4K2F A;  3SRA A;  1GK9 A;  4E56 A;  2ADV A;  1K5Q A;  3K3W A;  2AE3 A;  3L94 A;  1AJN A;  1AI7 A;  1FXH A;  1PNM A;  1PNK A;  3ML0 A;  4HSR A;  1GK1 A;  4YF9 A;  4M1J A;  2AE4 A;  4E57 A;  4HST A;  1CP9 A;  1PNL A;  2WYB A;  4YFB A;  4WKV A;  3SRB A;  1FXV A;  4PEL A;  4WKU A;  1AI4 A;  2WYD A;  3S8R A;  1KEC A;  2AE5 A; 
#chains in the Genus database with same CATH topology
 1AJQ A;  1K7D A;  2WYE A;  1JVZ A;  3SRC A;  4PEM A;  1JX9 A;  1AI6 A;  3L91 A;  4BTH A;  1JW0 A;  1OR0 A;  3JTQ A;  1AJP A;  4E55 A;  1E3A A;  1GKF A;  1K5S A;  1GM9 A;  1H2G A;  1KEH A;  3JTR A;  3FGT A;  1FM2 A;  2WYC A;  4WKT A;  1GM8 A;  4YFA A;  4BWC A;  4K2G A;  1AI5 A;  1GHD A;  4WKS A;  1GK0 A;  1GM7 A;  4K2F A;  3SRA A;  1GK9 A;  4E56 A;  2ADV A;  1K5Q A;  3K3W A;  2AE3 A;  3L94 A;  1AJN A;  1AI7 A;  1FXH A;  1PNM A;  1PNK A;  3ML0 A;  4HSR A;  1GK1 A;  3FGR A;  4YF9 A;  4M1J A;  2AE4 A;  4E57 A;  4HST A;  1CP9 A;  1PNL A;  2WYB A;  4YFB A;  4WKV A;  3SRB A;  1FXV A;  4PEL A;  4WKU A;  1AI4 A;  2WYD A;  3S8R A;  1KEC A;  2AE5 A; 
#chains in the Genus database with same CATH homology
 1AJQ A;  1K7D A;  2WYE A;  1JVZ A;  3SRC A;  4PEM A;  1JX9 A;  1AI6 A;  3L91 A;  4BTH A;  1JW0 A;  1OR0 A;  3JTQ A;  1AJP A;  4E55 A;  1E3A A;  1GKF A;  1K5S A;  1GM9 A;  1H2G A;  1KEH A;  3JTR A;  1FM2 A;  2WYC A;  4WKT A;  1GM8 A;  4YFA A;  4K2G A;  1AI5 A;  1GHD A;  4WKS A;  1GK0 A;  1GM7 A;  4K2F A;  3SRA A;  1GK9 A;  4E56 A;  2ADV A;  1K5Q A;  3K3W A;  2AE3 A;  3L94 A;  1AJN A;  1AI7 A;  1FXH A;  1PNM A;  1PNK A;  3ML0 A;  4HSR A;  1GK1 A;  4YF9 A;  4M1J A;  2AE4 A;  4E57 A;  4HST A;  1CP9 A;  1PNL A;  2WYB A;  4YFB A;  4WKV A;  3SRB A;  1FXV A;  4PEL A;  4WKU A;  1AI4 A;  2WYD A;  3S8R A;  1KEC A;  2AE5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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