3LHHA

The crystal structure of cbs domain protein from shewanella oneidensis mr-1.
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
125
structure length
125
Chain Sequence
TISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGERLELVDLVKNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEFF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords CBS domain protein
publication title The crystal structure of CBS domain protein from Shewanella oneidensis MR-1.
rcsb
source organism Shewanella oneidensis
total genus 27
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2010-01-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 3lhhA01
3KPBA 4IY2A 2PFIA 1YAVA 3K2VA 4FXSA 1XKFA 2OOYE 3I8NA 5IIPA 3LV9A 3T4NC 3KPCA 3GBYA 2UV5A 2D4ZA 5K24C 4UUUA 2EF7A 3SL7A 3FWRA 4L28A 4L3VA 2NYCA 3FNAA 2YVXA 2NYEA 3DDJA 1Y5HA 4DQWA 3LHHA 2RIHA 3FV6A 5K22B 2QRDE 4COOA 3LFZA 4IY3A 3TE5C 2QLVC 4FRYA 2OOXE 5KS7A 2QH1A 4NOCA 5K25C 4IY0A 2RC3A 2YVYA 3OCMA 2EMQA 4PCUA 4IY4A 3KXRA 2UV4A 4GQWA 4GQYA 3K6EA 5K23C 2UV6A 4IYSA 1O50A 4ESYB 4L0DA 3PC3A 3ORGA 4HG0A 3HF7A 2ZY9A 3OI8A 3LQNA 4O9KA 3TDHC 5LXQA 3PC4A 5MMZA 2RIFA 4L27A 3KPDA 2QR1E 3PC2A 3KH5A 2OUXA 3FHMA 3L2BA 2YZIA 2YZQA 2P9MA 3FWSA 2UV7A 3L31A 4GQVA 2QRCE 4P1GA 4ESYA 1PBJA 4P1OA 2O16A 3OCOA 2YVZA 2QREE 1PVMA
chains in the Genus database with same CATH superfamily
3KPBA 4IY2A 2PFIA 1YAVA 3K2VA 4FXSA 1XKFA 2OOYE 3I8NA 5IIPA 3LV9A 3T4NC 3KPCA 3GBYA 2UV5A 2D4ZA 5K24C 4UUUA 2EF7A 3SL7A 3FWRA 4L28A 4L3VA 2NYCA 3FNAA 2YVXA 2NYEA 3DDJA 1Y5HA 4DQWA 3LHHA 2RIHA 3FV6A 5K22B 2QRDE 4COOA 3LFZA 4IY3A 3TE5C 2QLVC 4FRYA 2OOXE 5KS7A 2QH1A 4NOCA 5K25C 4IY0A 2RC3A 2YVYA 3OCMA 2EMQA 4PCUA 4IY4A 3KXRA 2UV4A 4GQWA 4GQYA 3K6EA 5K23C 2UV6A 4IYSA 1O50A 2JA3A 4ESYB 4L0DA 3PC3A 3ORGA 4HG0A 3HF7A 2ZY9A 3OI8A 3LQNA 4O9KA 3TDHC 5LXQA 3PC4A 5MMZA 2RIFA 4L27A 3KPDA 2QR1E 3PC2A 3KH5A 2OUXA 3FHMA 3L2BA 2YZIA 2YZQA 2P9MA 3FWSA 2UV7A 3L31A 4GQVA 2QRCE 4P1GA 4ESYA 1PBJA 4P1OA 2O16A 3OCOA 2YVZA 2J9LA 2QREE 1PVMA
chains in the Genus database with same CATH topology
3KPBA 4IY2A 2PFIA 1YAVA 3K2VA 4FXSA 1XKFA 2OOYE 3I8NA 5IIPA 3LV9A 3T4NC 3KPCA 3GBYA 2UV5A 2D4ZA 5K24C 4UUUA 2EF7A 3SL7A 3FWRA 4L28A 4L3VA 2NYCA 3FNAA 2YVXA 2NYEA 3DDJA 1Y5HA 4DQWA 3LHHA 2RIHA 3FV6A 5K22B 2QRDE 4COOA 3LFZA 4IY3A 3TE5C 2QLVC 4FRYA 2OOXE 5KS7A 2QH1A 4NOCA 5K25C 4IY0A 2RC3A 2YVYA 3OCMA 2EMQA 4PCUA 4IY4A 3KXRA 2UV4A 4GQWA 4GQYA 3K6EA 5K23C 2UV6A 4IYSA 1O50A 2JA3A 4ESYB 4L0DA 3PC3A 3ORGA 4HG0A 3HF7A 2ZY9A 3OI8A 3LQNA 4O9KA 3TDHC 5LXQA 3PC4A 5MMZA 2RIFA 4L27A 3KPDA 2QR1E 3PC2A 3KH5A 2OUXA 3FHMA 3L2BA 2YZIA 2YZQA 2P9MA 3FWSA 2UV7A 3L31A 4GQVA 2QRCE 4P1GA 4ESYA 1PBJA 4P1OA 2O16A 3OCOA 2YVZA 2J9LA 2QREE 1PVMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KPB A;  4IY2 A;  2PFI A;  1YAV A;  3K2V A;  4FXS A;  1XKF A;  2OOY E;  3I8N A;  5IIP A;  3LV9 A;  3T4N C;  3KPC A;  3GBY A;  2UV5 A;  2D4Z A;  5K24 C;  4UUU A;  2EF7 A;  3SL7 A;  3FWR A;  4L28 A;  4L3V A;  2NYC A;  3FNA A;  2YVX A;  2NYE A;  3DDJ A;  1Y5H A;  4DQW A;  3LHH A;  2RIH A;  3FV6 A;  5K22 B;  2QRD E;  4COO A;  3LFZ A;  4IY3 A;  3TE5 C;  2QLV C;  4FRY A;  2OOX E;  5KS7 A;  2QH1 A;  4NOC A;  5K25 C;  4IY0 A;  2RC3 A;  2YVY A;  3OCM A;  2EMQ A;  4PCU A;  4IY4 A;  3KXR A;  2UV4 A;  4GQW A;  4GQY A;  3K6E A;  5K23 C;  2UV6 A;  4IYS A;  1O50 A;  4ESY B;  4L0D A;  3PC3 A;  3ORG A;  4HG0 A;  3HF7 A;  2ZY9 A;  3OI8 A;  3LQN A;  4O9K A;  3TDH C;  5LXQ A;  3PC4 A;  5MMZ A;  2RIF A;  4L27 A;  3KPD A;  2QR1 E;  3PC2 A;  3KH5 A;  2OUX A;  3FHM A;  3L2B A;  2YZI A;  2YZQ A;  2P9M A;  3FWS A;  2UV7 A;  3L31 A;  4GQV A;  2QRC E;  4P1G A;  4ESY A;  1PBJ A;  4P1O A;  2O16 A;  3OCO A;  2YVZ A;  2QRE E;  1PVM A; 
#chains in the Genus database with same CATH topology
 3KPB A;  4IY2 A;  2PFI A;  1YAV A;  3K2V A;  4FXS A;  1XKF A;  2OOY E;  3I8N A;  5IIP A;  3LV9 A;  3T4N C;  3KPC A;  3GBY A;  2UV5 A;  2D4Z A;  5K24 C;  4UUU A;  2EF7 A;  3SL7 A;  3FWR A;  4L28 A;  4L3V A;  2NYC A;  3FNA A;  2YVX A;  2NYE A;  3DDJ A;  1Y5H A;  4DQW A;  3LHH A;  2RIH A;  3FV6 A;  5K22 B;  2QRD E;  4COO A;  3LFZ A;  4IY3 A;  3TE5 C;  2QLV C;  4FRY A;  2OOX E;  5KS7 A;  2QH1 A;  4NOC A;  5K25 C;  4IY0 A;  2RC3 A;  2YVY A;  3OCM A;  2EMQ A;  4PCU A;  4IY4 A;  3KXR A;  2UV4 A;  4GQW A;  4GQY A;  3K6E A;  5K23 C;  2UV6 A;  4IYS A;  1O50 A;  2JA3 A;  4ESY B;  4L0D A;  3PC3 A;  3ORG A;  4HG0 A;  3HF7 A;  2ZY9 A;  3OI8 A;  3LQN A;  4O9K A;  3TDH C;  5LXQ A;  3PC4 A;  5MMZ A;  2RIF A;  4L27 A;  3KPD A;  2QR1 E;  3PC2 A;  3KH5 A;  2OUX A;  3FHM A;  3L2B A;  2YZI A;  2YZQ A;  2P9M A;  3FWS A;  2UV7 A;  3L31 A;  4GQV A;  2QRC E;  4P1G A;  4ESY A;  1PBJ A;  4P1O A;  2O16 A;  3OCO A;  2YVZ A;  2J9L A;  2QRE E;  1PVM A; 
#chains in the Genus database with same CATH homology
 3KPB A;  4IY2 A;  2PFI A;  1YAV A;  3K2V A;  4FXS A;  1XKF A;  2OOY E;  3I8N A;  5IIP A;  3LV9 A;  3T4N C;  3KPC A;  3GBY A;  2UV5 A;  2D4Z A;  5K24 C;  4UUU A;  2EF7 A;  3SL7 A;  3FWR A;  4L28 A;  4L3V A;  2NYC A;  3FNA A;  2YVX A;  2NYE A;  3DDJ A;  1Y5H A;  4DQW A;  3LHH A;  2RIH A;  3FV6 A;  5K22 B;  2QRD E;  4COO A;  3LFZ A;  4IY3 A;  3TE5 C;  2QLV C;  4FRY A;  2OOX E;  5KS7 A;  2QH1 A;  4NOC A;  5K25 C;  4IY0 A;  2RC3 A;  2YVY A;  3OCM A;  2EMQ A;  4PCU A;  4IY4 A;  3KXR A;  2UV4 A;  4GQW A;  4GQY A;  3K6E A;  5K23 C;  2UV6 A;  4IYS A;  1O50 A;  2JA3 A;  4ESY B;  4L0D A;  3PC3 A;  3ORG A;  4HG0 A;  3HF7 A;  2ZY9 A;  3OI8 A;  3LQN A;  4O9K A;  3TDH C;  5LXQ A;  3PC4 A;  5MMZ A;  2RIF A;  4L27 A;  3KPD A;  2QR1 E;  3PC2 A;  3KH5 A;  2OUX A;  3FHM A;  3L2B A;  2YZI A;  2YZQ A;  2P9M A;  3FWS A;  2UV7 A;  3L31 A;  4GQV A;  2QRC E;  4P1G A;  4ESY A;  1PBJ A;  4P1O A;  2O16 A;  3OCO A;  2YVZ A;  2J9L A;  2QRE E;  1PVM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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