3LHLA

Crystal structure of a putative agmatinase from clostridium difficile
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
276
structure length
276
Chain Sequence
b'NYEESNLIVFGVGFDGTTSNRPGARFASSSMRKEFYGLETYSPFLDLDLEDYNICDYGDLEISVGSTEQVLKEIYQETYKIVRDSKVPFMIGGEHLVTLPAFKAVHEKYNDIYVIHFDAHTDLREEYNNSKNSHATVIKRIWDIVGDNKIFQFGIRSGTKEEFKFATEEKHTYMEIGGIDTFENIVNMLNGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIIKNSNINIVGCDIVELSPDYDTTGVSTVIACKILRELCLIISDKIK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative agmatinase
publication title Crystal structure of a putative agmatinase from Clostridium difficile
rcsb
source organism Clostridium difficile
molecule tags Hydrolase
total genus 90
structure length 276
sequence length 276
ec nomenclature
pdb deposition date 2010-01-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 3lhlA00
1P8OA 4GWDA 1T4TA 3GN0A 4Q3RA 3MFVA 1GQ7A 4RHJA 3NIOA 3SJTA 4HXQA 1XFKA 3LHLA 4MYNA 4RHKA 1HQHA 2PHAA 3MJLA 4RLAA 1TA1A 2EF5A 3M1RA 1TBJA 1P8QA 2PHOA 3E9BA 4IU5A 5HJ9A 4IE3A 4MXRA 4IE2A 2AEBA 3PZLA 4FCIA 1HQFA 4DZ4A 1T5GA 3E6VA 3RLAA 3DJ8A 1TBLA 4G3HA 1GQ6A 1WVBA 3LP7A 1ZPEA 1P8MA 1PQ3A 4IE1A 4GSVA 4IU1A 2A0MA 4RHLA 2EIVA 3E8ZA 3E6KA 4Q42A 1WOGA 1HQ5A 1T5FA 4GSZA 4MYKA 1HQGA 4IU0A 4Q3PA 3KV2A 3LP4A 4IU4A 1P8PA 3MMRA 3THHA 3CEVA 3TH7A 4Q3TA 1T4PA 1T4RA 4Q3UA 4ITYA 1WVAA 3NIPA 2EF4A 4Q40A 3THEA 4Q41A 1P8RA 4MYLA 3MFWA 1D3VA 4HZEA 4GSMA 1P8NA 4Q3SA 4RHQA 1WOHA 1ZPGA 4IXVA 4Q3VA 3GMZA 3NIQA 3THJA 4RHIA 4HWWA 1R1OA 4RHMA 5HJAA 1T4SA 4I06A 4MYFA 2CEVA 3SKKA 1RLAA 4GWCA 3E8QA 2ZAVA 5RLAA 2PLLA 1HQXA 3SL0A 1CEVA 3SL1A 2RLAA 3TF3A 1WOIA 4Q3RC 5CEVA 1TBHA 4CEVA 1P8SA 4FCKA 4IXUA 4Q3QA 3F80A
chains in the Genus database with same CATH superfamily
1P8OA 3MAXA 4GWDA 1T4TA 3GN0A 3MZ4A 4CBTA 4Q3RA 4BKXB 3MFVA 1GQ7A 3EZPA 4LXZA 4RHJA 3NIOA 3SJTA 4HXQA 5G0GA 4BZ5A 5D1CA 5A2SA 4RN0A 1XFKA 3LHLA 4MYNA 4RHKA 3EZTA 5EEKA 5G1BA 2VQVA 1HQHA 3Q9EA 2PHAA 3MJLA 2VQMA 4RLAA 4ZUPA 1TA1A 4BZ6A 2EF5A 3M1RA 5THVA 1TBJA 5G17A 3C0YA 1P8QA 4QA3A 5DC7A 2PHOA 3E9BA 4IU5A 3SFFA 1T67A 5HJ9A 5BWZA 4IE3A 4QA4A 4MXRA 2VQJA 4QA5A 4IE2A 4LY1A 2AEBA 1W22A 3PZLA 4FCIA 4CBYA 5G0JA 1ZZ1A 4ZUMA 1HQFA 5IWGA 4DZ4A 1T64A 1T5GA 3EW8A 3E6VA 3RLAA 4QA7A 4ZUOA 3DJ8A 3F0RA 5EEIA 1TBLA 4G3HA 5G13A 5EEFA 1GQ6A 1WVBA 3LP7A 5DC6A 1ZPEA 1P8MA 1PQ3A 4IE1A 4RN2A 4GSVA 4IU1A 2A0MA 2GH6A 3Q9CA 3SFHA 5G3WA 4BZ7A 5D1BA 5EF8A 4RHLA 2EIVA 1VKGA 5G0XA 4ZUNA 4BZ9A 3E8ZA 3E6KA 3Q9FA 1WOGA 1HQ5A 1T5FA 4Q42A 5LI3A 1C3RA 4GSZA 3F07A 5FCWA 4MYKA 1HQGA 4IU0A 4Q3PA 3KV2A 3LP4A 4IU4A 3MZ3A 2VQOA 4CQFA 5ICNB 1P8PA 3MMRA 3THHA 1ZZ0A 3CEVA 3TH7A 4Q3TA 2VQWG 5EF7A 5IX0A 5JI5A 3ZNSA 1T4PA 1T4RA 5EEMA 5G1CA 4Q3UA 4ITYA 1WVAA 3EWFA 4RN1A 3NIPA 2EF4A 4Q40A 4QA2A 5THUA 3THEA 4Q41A 1P8RA 4MYLA 5G11A 3MFWA 1D3VA 4HZEA 4GSMA 1P8NA 5D1DA 1ZZ3A 5FUEA 5EFHA 5EFBD 3F06A 4Q3SA 4RHQA 1WOHA 1ZPGA 2VQQA 5EFJD 3Q9BA 4IXVA 4Q3VA 3GMZA 3NIQA 3THJA 4BZ8A 4RHIA 4ZUQA 5EFNA 4HWWA 5EFGA 5G10A 5DC8A 5G0YA 1R1OA 2V5WA 4RHMA 5HJAA 5G12A 1T4SA 1C3PA 4A69A 5THTA 4I06A 4MYFA 2VCGA 5EFKB 2CEVA 4ZURA 3SKKA 1RLAA 4GWCA 3E8QA 4QA6A 2ZAVA 5DC5A 5G0HA 5G0IA 5RLAA 2PLLA 5G1AA 3MENA 1HQXA 3RQDA 4QA1A 3SL0A 1CEVA 3SL1A 2RLAA 3TF3A 2V5XA 3C10A 1WOIA 3C0ZA 1T69A 4Q3RC 5EENA 5CEVA 1TBHA 3MZ7A 4QA0A 4CEVA 1P8SA 5THSA 1C3SA 4FCKA 3MZ6A 4IXUA 3ZNRA 4Q3QA 3F80A
chains in the Genus database with same CATH topology
1P8OA 4GWDA 1T4TA 3GN0A 4Q3RA 3MFVA 1GQ7A 4RHJA 3NIOA 3SJTA 4HXQA 1XFKA 3LHLA 4MYNA 4RHKA 1HQHA 2PHAA 3MJLA 4RLAA 1TA1A 2EF5A 3M1RA 1TBJA 1P8QA 2PHOA 3E9BA 4IU5A 5HJ9A 4IE3A 4MXRA 4IE2A 2AEBA 3PZLA 4FCIA 1HQFA 4DZ4A 1T5GA 3E6VA 3RLAA 3DJ8A 1TBLA 4G3HA 1GQ6A 1WVBA 3LP7A 1ZPEA 1P8MA 1PQ3A 4IE1A 4GSVA 4IU1A 2A0MA 4RHLA 2EIVA 3E8ZA 3E6KA 4Q42A 1WOGA 1HQ5A 1T5FA 4GSZA 4MYKA 1HQGA 4IU0A 4Q3PA 3KV2A 3LP4A 4IU4A 1P8PA 3MMRA 3THHA 3CEVA 3TH7A 4Q3TA 1T4PA 1T4RA 4Q3UA 4ITYA 1WVAA 3NIPA 2EF4A 4Q40A 3THEA 4Q41A 1P8RA 4MYLA 3MFWA 1D3VA 4HZEA 4GSMA 1P8NA 4Q3SA 4RHQA 1WOHA 1ZPGA 4IXVA 4Q3VA 3GMZA 3NIQA 3THJA 4RHIA 4HWWA 1R1OA 4RHMA 5HJAA 1T4SA 4I06A 4MYFA 2CEVA 3SKKA 1RLAA 4GWCA 3E8QA 2ZAVA 5RLAA 2PLLA 1HQXA 3SL0A 1CEVA 3SL1A 2RLAA 3TF3A 1WOIA 4Q3RC 5CEVA 1TBHA 4CEVA 1P8SA 4FCKA 4IXUA 4Q3QA 3F80A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P8O A;  4GWD A;  1T4T A;  3GN0 A;  4Q3R A;  3MFV A;  1GQ7 A;  4RHJ A;  3NIO A;  3SJT A;  4HXQ A;  1XFK A;  3LHL A;  4MYN A;  4RHK A;  1HQH A;  2PHA A;  3MJL A;  4RLA A;  1TA1 A;  2EF5 A;  3M1R A;  1TBJ A;  1P8Q A;  2PHO A;  3E9B A;  4IU5 A;  5HJ9 A;  4IE3 A;  4MXR A;  4IE2 A;  2AEB A;  3PZL A;  4FCI A;  1HQF A;  4DZ4 A;  1T5G A;  3E6V A;  3RLA A;  3DJ8 A;  1TBL A;  4G3H A;  1GQ6 A;  1WVB A;  3LP7 A;  1ZPE A;  1P8M A;  1PQ3 A;  4IE1 A;  4GSV A;  4IU1 A;  2A0M A;  4RHL A;  2EIV A;  3E8Z A;  3E6K A;  4Q42 A;  1WOG A;  1HQ5 A;  1T5F A;  4GSZ A;  4MYK A;  1HQG A;  4IU0 A;  4Q3P A;  3KV2 A;  3LP4 A;  4IU4 A;  1P8P A;  3MMR A;  3THH A;  3CEV A;  3TH7 A;  4Q3T A;  1T4P A;  1T4R A;  4Q3U A;  4ITY A;  1WVA A;  3NIP A;  2EF4 A;  4Q40 A;  3THE A;  4Q41 A;  1P8R A;  4MYL A;  3MFW A;  1D3V A;  4HZE A;  4GSM A;  1P8N A;  4Q3S A;  4RHQ A;  1WOH A;  1ZPG A;  4IXV A;  4Q3V A;  3GMZ A;  3NIQ A;  3THJ A;  4RHI A;  4HWW A;  1R1O A;  4RHM A;  5HJA A;  1T4S A;  4I06 A;  4MYF A;  2CEV A;  3SKK A;  1RLA A;  4GWC A;  3E8Q A;  2ZAV A;  5RLA A;  2PLL A;  1HQX A;  3SL0 A;  1CEV A;  3SL1 A;  2RLA A;  3TF3 A;  1WOI A;  4Q3R C;  5CEV A;  1TBH A;  4CEV A;  1P8S A;  4FCK A;  4IXU A;  4Q3Q A;  3F80 A; 
#chains in the Genus database with same CATH topology
 1P8O A;  3MAX A;  4GWD A;  1T4T A;  3GN0 A;  3MZ4 A;  4CBT A;  4Q3R A;  4BKX B;  3MFV A;  1GQ7 A;  3EZP A;  4LXZ A;  4RHJ A;  3NIO A;  3SJT A;  4HXQ A;  5G0G A;  4BZ5 A;  5D1C A;  5A2S A;  4RN0 A;  1XFK A;  3LHL A;  4MYN A;  4RHK A;  3EZT A;  5EEK A;  5G1B A;  2VQV A;  1HQH A;  3Q9E A;  2PHA A;  3MJL A;  2VQM A;  4RLA A;  4ZUP A;  1TA1 A;  4BZ6 A;  2EF5 A;  3M1R A;  5THV A;  1TBJ A;  5G17 A;  3C0Y A;  1P8Q A;  4QA3 A;  5DC7 A;  2PHO A;  3E9B A;  4IU5 A;  3SFF A;  1T67 A;  5HJ9 A;  5BWZ A;  4IE3 A;  4QA4 A;  4MXR A;  2VQJ A;  4QA5 A;  4IE2 A;  4LY1 A;  2AEB A;  1W22 A;  3PZL A;  4FCI A;  4CBY A;  5G0J A;  1ZZ1 A;  4ZUM A;  1HQF A;  5IWG A;  4DZ4 A;  1T64 A;  1T5G A;  3EW8 A;  3E6V A;  3RLA A;  4QA7 A;  4ZUO A;  3DJ8 A;  3F0R A;  5EEI A;  1TBL A;  4G3H A;  5G13 A;  5EEF A;  1GQ6 A;  1WVB A;  3LP7 A;  5DC6 A;  1ZPE A;  1P8M A;  1PQ3 A;  4IE1 A;  4RN2 A;  4GSV A;  4IU1 A;  2A0M A;  2GH6 A;  3Q9C A;  3SFH A;  5G3W A;  4BZ7 A;  5D1B A;  5EF8 A;  4RHL A;  2EIV A;  1VKG A;  5G0X A;  4ZUN A;  4BZ9 A;  3E8Z A;  3E6K A;  3Q9F A;  1WOG A;  1HQ5 A;  1T5F A;  4Q42 A;  5LI3 A;  1C3R A;  4GSZ A;  3F07 A;  5FCW A;  4MYK A;  1HQG A;  4IU0 A;  4Q3P A;  3KV2 A;  3LP4 A;  4IU4 A;  3MZ3 A;  2VQO A;  4CQF A;  5ICN B;  1P8P A;  3MMR A;  3THH A;  1ZZ0 A;  3CEV A;  3TH7 A;  4Q3T A;  2VQW G;  5EF7 A;  5IX0 A;  5JI5 A;  3ZNS A;  1T4P A;  1T4R A;  5EEM A;  5G1C A;  4Q3U A;  4ITY A;  1WVA A;  3EWF A;  4RN1 A;  3NIP A;  2EF4 A;  4Q40 A;  4QA2 A;  5THU A;  3THE A;  4Q41 A;  1P8R A;  4MYL A;  5G11 A;  3MFW A;  1D3V A;  4HZE A;  4GSM A;  1P8N A;  5D1D A;  1ZZ3 A;  5FUE A;  5EFH A;  5EFB D;  3F06 A;  4Q3S A;  4RHQ A;  1WOH A;  1ZPG A;  2VQQ A;  5EFJ D;  3Q9B A;  4IXV A;  4Q3V A;  3GMZ A;  3NIQ A;  3THJ A;  4BZ8 A;  4RHI A;  4ZUQ A;  5EFN A;  4HWW A;  5EFG A;  5G10 A;  5DC8 A;  5G0Y A;  1R1O A;  2V5W A;  4RHM A;  5HJA A;  5G12 A;  1T4S A;  1C3P A;  4A69 A;  5THT A;  4I06 A;  4MYF A;  2VCG A;  5EFK B;  2CEV A;  4ZUR A;  3SKK A;  1RLA A;  4GWC A;  3E8Q A;  4QA6 A;  2ZAV A;  5DC5 A;  5G0H A;  5G0I A;  5RLA A;  2PLL A;  5G1A A;  3MEN A;  1HQX A;  3RQD A;  4QA1 A;  3SL0 A;  1CEV A;  3SL1 A;  2RLA A;  3TF3 A;  2V5X A;  3C10 A;  1WOI A;  3C0Z A;  1T69 A;  4Q3R C;  5EEN A;  5CEV A;  1TBH A;  3MZ7 A;  4QA0 A;  4CEV A;  1P8S A;  5THS A;  1C3S A;  4FCK A;  3MZ6 A;  4IXU A;  3ZNR A;  4Q3Q A;  3F80 A; 
#chains in the Genus database with same CATH homology
 1P8O A;  4GWD A;  1T4T A;  3GN0 A;  4Q3R A;  3MFV A;  1GQ7 A;  4RHJ A;  3NIO A;  3SJT A;  4HXQ A;  1XFK A;  3LHL A;  4MYN A;  4RHK A;  1HQH A;  2PHA A;  3MJL A;  4RLA A;  1TA1 A;  2EF5 A;  3M1R A;  1TBJ A;  1P8Q A;  2PHO A;  3E9B A;  4IU5 A;  5HJ9 A;  4IE3 A;  4MXR A;  4IE2 A;  2AEB A;  3PZL A;  4FCI A;  1HQF A;  4DZ4 A;  1T5G A;  3E6V A;  3RLA A;  3DJ8 A;  1TBL A;  4G3H A;  1GQ6 A;  1WVB A;  3LP7 A;  1ZPE A;  1P8M A;  1PQ3 A;  4IE1 A;  4GSV A;  4IU1 A;  2A0M A;  4RHL A;  2EIV A;  3E8Z A;  3E6K A;  4Q42 A;  1WOG A;  1HQ5 A;  1T5F A;  4GSZ A;  4MYK A;  1HQG A;  4IU0 A;  4Q3P A;  3KV2 A;  3LP4 A;  4IU4 A;  1P8P A;  3MMR A;  3THH A;  3CEV A;  3TH7 A;  4Q3T A;  1T4P A;  1T4R A;  4Q3U A;  4ITY A;  1WVA A;  3NIP A;  2EF4 A;  4Q40 A;  3THE A;  4Q41 A;  1P8R A;  4MYL A;  3MFW A;  1D3V A;  4HZE A;  4GSM A;  1P8N A;  4Q3S A;  4RHQ A;  1WOH A;  1ZPG A;  4IXV A;  4Q3V A;  3GMZ A;  3NIQ A;  3THJ A;  4RHI A;  4HWW A;  1R1O A;  4RHM A;  5HJA A;  1T4S A;  4I06 A;  4MYF A;  2CEV A;  3SKK A;  1RLA A;  4GWC A;  3E8Q A;  2ZAV A;  5RLA A;  2PLL A;  1HQX A;  3SL0 A;  1CEV A;  3SL1 A;  2RLA A;  3TF3 A;  1WOI A;  4Q3R C;  5CEV A;  1TBH A;  4CEV A;  1P8S A;  4FCK A;  4IXU A;  4Q3Q A;  3F80 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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