3LHLA

Crystal structure of a putative agmatinase from clostridium difficile
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
276
structure length
276
Chain Sequence
NYEESNLIVFGVGFDGTTSNRPGARFASSSMRKEFYGLETYSPFLDLDLEDYNICDYGDLEISVGSTEQVLKEIYQETYKIVRDSKVPFMIGGEHLVTLPAFKAVHEKYNDIYVIHFDAHTDLREEYNNSKNSHATVIKRIWDIVGDNKIFQFGIRSGTKEEFKFATEEKHTYMEIGGIDTFENIVNMLNGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIIKNSNINIVGCDIVELSPDYDTTGVSTVIACKILRELCLIISDKIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative agmatinase
publication title Crystal structure of a putative agmatinase from Clostridium difficile
rcsb
source organism Clostridium difficile
molecule tags Hydrolase
total genus 90
structure length 276
sequence length 276
ec nomenclature
pdb deposition date 2010-01-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 3lhlA00
3DJ8A 3M1RA 4IE3A 2PHOA 4IU4A 4FCIA 1WVAA 3MMRA 2EF4A 3E8QA 4GSMA 3KV2A 1T4PA 1R1OA 4CEVA 2PHAA 1TA1A 4RHIA 4Q3UA 4RHQA 4Q40A 2AEBA 3MJLA 4GSZA 3SKKA 3F80A 1WOGA 3TH7A 1P8SA 4Q3VA 3E6KA 2CEVA 3PZLA 1CEVA 4DZ4A 1T4SA 2A0MA 4IU0A 1RLAA 1HQFA 4RHLA 4GSVA 3TF3A 3E8ZA 4IU5A 1P8RA 1P8NA 1T5GA 3SL1A 1XFKA 3MFWA 4Q3QA 4Q42A 4Q3TA 4IU1A 4RHKA 2EF5A 1HQHA 1P8MA 3THEA 1P8PA 4MYLA 4Q41A 1TBHA 3LP7A 4I06A 4ITYA 4HZEA 3CEVA 4MYFA 1P8QA 4MYNA 1T4TA 2EIVA 3SL0A 1T5FA 4Q3PA 1T4RA 1GQ7A 1HQGA 1ZPGA 3NIQA 3LHLA 5CEVA 3GMZA 4MYKA 1HQ5A 1HQXA 3RLAA 4IE2A 1D3VA 3E6VA 1PQ3A 2ZAVA 3E9BA 5HJAA 4FCKA 4HWWA 4IXUA 4RLAA 4Q3RC 4RHJA 4GWCA 1P8OA 2PLLA 3NIOA 3MFVA 1GQ6A 4Q3RA 3THJA 4RHMA 4MXRA 1WVBA 4IE1A 5HJ9A 3LP4A 1ZPEA 4Q3SA 1WOIA 4HXQA 1WOHA 1TBLA 4GWDA 4G3HA 1TBJA 3GN0A 2RLAA 3THHA 3NIPA 3SJTA 5RLAA 4IXVA
chains in the Genus database with same CATH superfamily
4BZ9A 4BZ6A 3DJ8A 3M1RA 4RN2A 4IE3A 5G1AA 1VKGA 2PHOA 4IU4A 4FCIA 5FCWA 4QA7A 3MZ4A 1WVAA 3MMRA 2EF4A 3MZ7A 5JI5A 3E8QA 4GSMA 3KV2A 1T4PA 1T64A 2VQVA 1R1OA 3Q9BA 4QA0A 4CEVA 2PHAA 1TA1A 3F07A 4RHIA 4Q3UA 3ZNRA 5D1CA 4RHQA 5EF7A 4Q40A 4BKXB 3ZNSA 1C3RA 3EZPA 2VQQA 1ZZ1A 2AEBA 5EENA 3MJLA 4LY1A 5EFJD 3EWFA 3RQDA 4GSZA 3SKKA 3F80A 1WOGA 3TH7A 3Q9CA 1P8SA 4Q3VA 5ICNB 3E6KA 2CEVA 3PZLA 1CEVA 5EFNA 5EFHA 5IX0A 4DZ4A 5EEMA 1T4SA 2A0MA 4IU0A 4BZ5A 4RN1A 5D1DA 3MAXA 1RLAA 1HQFA 5DC6A 2VQWG 3F0RA 4RHLA 4GSVA 5G0IA 5THSA 3TF3A 3E8ZA 4IU5A 1P8RA 4ZURA 3C0YA 5EFBD 4BZ7A 3MENA 1P8NA 1T5GA 2GH6A 5DC7A 3SL1A 1XFKA 3MFWA 2VQJA 2V5XA 4Q3QA 4CBYA 4Q42A 5BWZA 5A2SA 4Q3TA 4IU1A 4RHKA 5G3WA 2EF5A 3EW8A 1HQHA 1P8MA 4ZUMA 3THEA 5G1BA 1P8PA 5EEKA 1C3SA 4MYLA 5THTA 4Q41A 1TBHA 3LP7A 4I06A 3MZ6A 4HZEA 3CEVA 4ITYA 4ZUNA 1ZZ3A 4MYFA 1P8QA 4MYNA 1T4TA 1W22A 2EIVA 2VQMA 4QA4A 5G1CA 1T5FA 4Q3PA 3SL0A 1T4RA 3Q9EA 1GQ7A 1HQGA 4LXZA 5EEIA 2VCGA 5EFKB 1ZPGA 4BZ8A 5G0JA 3NIQA 3LHLA 5G0XA 5G0YA 5THVA 4ZUPA 5EEFA 3GMZA 4MYKA 5CEVA 1HQ5A 5G12A 5G0GA 1HQXA 3RLAA 4ZUQA 1T69A 3F06A 4IE2A 5DC8A 1D3VA 5LI3A 3E6VA 2VQOA 1C3PA 1PQ3A 2ZAVA 3E9BA 3C0ZA 3SFHA 1ZZ0A 4QA3A 4CQFA 4QA6A 5FUEA 5HJAA 4FCKA 4HWWA 4IXUA 4ZUOA 4RLAA 4Q3RC 3SFFA 4QA5A 4RHJA 5D1BA 4GWCA 1P8OA 2PLLA 3NIOA 3MFVA 1GQ6A 4Q3RA 3THJA 4RHMA 4MXRA 5DC5A 1WVBA 4IE1A 4RN0A 5EF8A 5EFGA 5HJ9A 3LP4A 3Q9FA 1ZPEA 4Q3SA 4A69A 1WOIA 4HXQA 1WOHA 5G11A 1TBLA 4QA1A 5G0HA 3EZTA 4GWDA 4G3HA 1TBJA 3GN0A 2V5WA 5THUA 5G17A 2RLAA 3THHA 4QA2A 4CBTA 3C10A 3NIPA 3SJTA 5RLAA 1T67A 3MZ3A 5G13A 5IWGA 5G10A 4IXVA
chains in the Genus database with same CATH topology
3DJ8A 3M1RA 4IE3A 2PHOA 4IU4A 4FCIA 1WVAA 3MMRA 2EF4A 3E8QA 4GSMA 3KV2A 1T4PA 1R1OA 4CEVA 2PHAA 1TA1A 4RHIA 4Q3UA 4RHQA 4Q40A 2AEBA 3MJLA 4GSZA 3SKKA 3F80A 1WOGA 3TH7A 1P8SA 4Q3VA 3E6KA 2CEVA 3PZLA 1CEVA 4DZ4A 1T4SA 2A0MA 4IU0A 1RLAA 1HQFA 4RHLA 4GSVA 3TF3A 3E8ZA 4IU5A 1P8RA 1P8NA 1T5GA 3SL1A 1XFKA 3MFWA 4Q3QA 4Q42A 4Q3TA 4IU1A 4RHKA 2EF5A 1HQHA 1P8MA 3THEA 1P8PA 4MYLA 4Q41A 1TBHA 3LP7A 4I06A 4ITYA 4HZEA 3CEVA 4MYFA 1P8QA 4MYNA 1T4TA 2EIVA 3SL0A 1T5FA 4Q3PA 1T4RA 1GQ7A 1HQGA 1ZPGA 3NIQA 3LHLA 5CEVA 3GMZA 4MYKA 1HQ5A 1HQXA 3RLAA 4IE2A 1D3VA 3E6VA 1PQ3A 2ZAVA 3E9BA 5HJAA 4FCKA 4HWWA 4IXUA 4RLAA 4Q3RC 4RHJA 4GWCA 1P8OA 2PLLA 3NIOA 3MFVA 1GQ6A 4Q3RA 3THJA 4RHMA 4MXRA 1WVBA 4IE1A 5HJ9A 3LP4A 1ZPEA 4Q3SA 1WOIA 4HXQA 1WOHA 1TBLA 4GWDA 4G3HA 1TBJA 3GN0A 2RLAA 3THHA 3NIPA 3SJTA 5RLAA 4IXVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DJ8 A;  3M1R A;  4IE3 A;  2PHO A;  4IU4 A;  4FCI A;  1WVA A;  3MMR A;  2EF4 A;  3E8Q A;  4GSM A;  3KV2 A;  1T4P A;  1R1O A;  4CEV A;  2PHA A;  1TA1 A;  4RHI A;  4Q3U A;  4RHQ A;  4Q40 A;  2AEB A;  3MJL A;  4GSZ A;  3SKK A;  3F80 A;  1WOG A;  3TH7 A;  1P8S A;  4Q3V A;  3E6K A;  2CEV A;  3PZL A;  1CEV A;  4DZ4 A;  1T4S A;  2A0M A;  4IU0 A;  1RLA A;  1HQF A;  4RHL A;  4GSV A;  3TF3 A;  3E8Z A;  4IU5 A;  1P8R A;  1P8N A;  1T5G A;  3SL1 A;  1XFK A;  3MFW A;  4Q3Q A;  4Q42 A;  4Q3T A;  4IU1 A;  4RHK A;  2EF5 A;  1HQH A;  1P8M A;  3THE A;  1P8P A;  4MYL A;  4Q41 A;  1TBH A;  3LP7 A;  4I06 A;  4ITY A;  4HZE A;  3CEV A;  4MYF A;  1P8Q A;  4MYN A;  1T4T A;  2EIV A;  3SL0 A;  1T5F A;  4Q3P A;  1T4R A;  1GQ7 A;  1HQG A;  1ZPG A;  3NIQ A;  3LHL A;  5CEV A;  3GMZ A;  4MYK A;  1HQ5 A;  1HQX A;  3RLA A;  4IE2 A;  1D3V A;  3E6V A;  1PQ3 A;  2ZAV A;  3E9B A;  5HJA A;  4FCK A;  4HWW A;  4IXU A;  4RLA A;  4Q3R C;  4RHJ A;  4GWC A;  1P8O A;  2PLL A;  3NIO A;  3MFV A;  1GQ6 A;  4Q3R A;  3THJ A;  4RHM A;  4MXR A;  1WVB A;  4IE1 A;  5HJ9 A;  3LP4 A;  1ZPE A;  4Q3S A;  1WOI A;  4HXQ A;  1WOH A;  1TBL A;  4GWD A;  4G3H A;  1TBJ A;  3GN0 A;  2RLA A;  3THH A;  3NIP A;  3SJT A;  5RLA A;  4IXV A; 
#chains in the Genus database with same CATH topology
 4BZ9 A;  4BZ6 A;  3DJ8 A;  3M1R A;  4RN2 A;  4IE3 A;  5G1A A;  1VKG A;  2PHO A;  4IU4 A;  4FCI A;  5FCW A;  4QA7 A;  3MZ4 A;  1WVA A;  3MMR A;  2EF4 A;  3MZ7 A;  5JI5 A;  3E8Q A;  4GSM A;  3KV2 A;  1T4P A;  1T64 A;  2VQV A;  1R1O A;  3Q9B A;  4QA0 A;  4CEV A;  2PHA A;  1TA1 A;  3F07 A;  4RHI A;  4Q3U A;  3ZNR A;  5D1C A;  4RHQ A;  5EF7 A;  4Q40 A;  4BKX B;  3ZNS A;  1C3R A;  3EZP A;  2VQQ A;  1ZZ1 A;  2AEB A;  5EEN A;  3MJL A;  4LY1 A;  5EFJ D;  3EWF A;  3RQD A;  4GSZ A;  3SKK A;  3F80 A;  1WOG A;  3TH7 A;  3Q9C A;  1P8S A;  4Q3V A;  5ICN B;  3E6K A;  2CEV A;  3PZL A;  1CEV A;  5EFN A;  5EFH A;  5IX0 A;  4DZ4 A;  5EEM A;  1T4S A;  2A0M A;  4IU0 A;  4BZ5 A;  4RN1 A;  5D1D A;  3MAX A;  1RLA A;  1HQF A;  5DC6 A;  2VQW G;  3F0R A;  4RHL A;  4GSV A;  5G0I A;  5THS A;  3TF3 A;  3E8Z A;  4IU5 A;  1P8R A;  4ZUR A;  3C0Y A;  5EFB D;  4BZ7 A;  3MEN A;  1P8N A;  1T5G A;  2GH6 A;  5DC7 A;  3SL1 A;  1XFK A;  3MFW A;  2VQJ A;  2V5X A;  4Q3Q A;  4CBY A;  4Q42 A;  5BWZ A;  5A2S A;  4Q3T A;  4IU1 A;  4RHK A;  5G3W A;  2EF5 A;  3EW8 A;  1HQH A;  1P8M A;  4ZUM A;  3THE A;  5G1B A;  1P8P A;  5EEK A;  1C3S A;  4MYL A;  5THT A;  4Q41 A;  1TBH A;  3LP7 A;  4I06 A;  3MZ6 A;  4HZE A;  3CEV A;  4ITY A;  4ZUN A;  1ZZ3 A;  4MYF A;  1P8Q A;  4MYN A;  1T4T A;  1W22 A;  2EIV A;  2VQM A;  4QA4 A;  5G1C A;  1T5F A;  4Q3P A;  3SL0 A;  1T4R A;  3Q9E A;  1GQ7 A;  1HQG A;  4LXZ A;  5EEI A;  2VCG A;  5EFK B;  1ZPG A;  4BZ8 A;  5G0J A;  3NIQ A;  3LHL A;  5G0X A;  5G0Y A;  5THV A;  4ZUP A;  5EEF A;  3GMZ A;  4MYK A;  5CEV A;  1HQ5 A;  5G12 A;  5G0G A;  1HQX A;  3RLA A;  4ZUQ A;  1T69 A;  3F06 A;  4IE2 A;  5DC8 A;  1D3V A;  5LI3 A;  3E6V A;  2VQO A;  1C3P A;  1PQ3 A;  2ZAV A;  3E9B A;  3C0Z A;  3SFH A;  1ZZ0 A;  4QA3 A;  4CQF A;  4QA6 A;  5FUE A;  5HJA A;  4FCK A;  4HWW A;  4IXU A;  4ZUO A;  4RLA A;  4Q3R C;  3SFF A;  4QA5 A;  4RHJ A;  5D1B A;  4GWC A;  1P8O A;  2PLL A;  3NIO A;  3MFV A;  1GQ6 A;  4Q3R A;  3THJ A;  4RHM A;  4MXR A;  5DC5 A;  1WVB A;  4IE1 A;  4RN0 A;  5EF8 A;  5EFG A;  5HJ9 A;  3LP4 A;  3Q9F A;  1ZPE A;  4Q3S A;  4A69 A;  1WOI A;  4HXQ A;  1WOH A;  5G11 A;  1TBL A;  4QA1 A;  5G0H A;  3EZT A;  4GWD A;  4G3H A;  1TBJ A;  3GN0 A;  2V5W A;  5THU A;  5G17 A;  2RLA A;  3THH A;  4QA2 A;  4CBT A;  3C10 A;  3NIP A;  3SJT A;  5RLA A;  1T67 A;  3MZ3 A;  5G13 A;  5IWG A;  5G10 A;  4IXV A; 
#chains in the Genus database with same CATH homology
 3DJ8 A;  3M1R A;  4IE3 A;  2PHO A;  4IU4 A;  4FCI A;  1WVA A;  3MMR A;  2EF4 A;  3E8Q A;  4GSM A;  3KV2 A;  1T4P A;  1R1O A;  4CEV A;  2PHA A;  1TA1 A;  4RHI A;  4Q3U A;  4RHQ A;  4Q40 A;  2AEB A;  3MJL A;  4GSZ A;  3SKK A;  3F80 A;  1WOG A;  3TH7 A;  1P8S A;  4Q3V A;  3E6K A;  2CEV A;  3PZL A;  1CEV A;  4DZ4 A;  1T4S A;  2A0M A;  4IU0 A;  1RLA A;  1HQF A;  4RHL A;  4GSV A;  3TF3 A;  3E8Z A;  4IU5 A;  1P8R A;  1P8N A;  1T5G A;  3SL1 A;  1XFK A;  3MFW A;  4Q3Q A;  4Q42 A;  4Q3T A;  4IU1 A;  4RHK A;  2EF5 A;  1HQH A;  1P8M A;  3THE A;  1P8P A;  4MYL A;  4Q41 A;  1TBH A;  3LP7 A;  4I06 A;  4ITY A;  4HZE A;  3CEV A;  4MYF A;  1P8Q A;  4MYN A;  1T4T A;  2EIV A;  3SL0 A;  1T5F A;  4Q3P A;  1T4R A;  1GQ7 A;  1HQG A;  1ZPG A;  3NIQ A;  3LHL A;  5CEV A;  3GMZ A;  4MYK A;  1HQ5 A;  1HQX A;  3RLA A;  4IE2 A;  1D3V A;  3E6V A;  1PQ3 A;  2ZAV A;  3E9B A;  5HJA A;  4FCK A;  4HWW A;  4IXU A;  4RLA A;  4Q3R C;  4RHJ A;  4GWC A;  1P8O A;  2PLL A;  3NIO A;  3MFV A;  1GQ6 A;  4Q3R A;  3THJ A;  4RHM A;  4MXR A;  1WVB A;  4IE1 A;  5HJ9 A;  3LP4 A;  1ZPE A;  4Q3S A;  1WOI A;  4HXQ A;  1WOH A;  1TBL A;  4GWD A;  4G3H A;  1TBJ A;  3GN0 A;  2RLA A;  3THH A;  3NIP A;  3SJT A;  5RLA A;  4IXV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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