3LK2A

Crystal structure of capz bound to the uncapping motif from carmil
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
270
structure length
270
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
publication title Structural characterization of a capping protein interaction motif defines a family of actin filament regulators
doi rcsb
source organism Gallus gallus
total genus 80
structure length 270
sequence length 270
ec nomenclature
pdb deposition date 2010-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3lk2A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3lk2A02
3LK41 3LK3A 3LK42 2KZ7B 5ADXL 3AA1A 4AKRA 3LK3B 1IZNA 3AA1B 5ADXK 4AKRB 5AFUL 2KXPA 3AA7A 1IZNB 3AA6A 3AAAA 3LK2A 3AAEA 2KXPB 3AA7B 3AA6B 3AA0A 5AFUK 3AAAB 3LK2B 3AAEB 3AA0B 2KZ7A
chains in the Genus database with same CATH superfamily
3WU2O 2O4VA 2KZ7B 3LK42 4LSIA 3O0EA 4XNLA 4FSPA 2WJQA 2KXPA 3AAAA 3KVDD 1YS5A 4O3WA 2IWVA 3AA7B 5AFUK 1H6S1 4O4XA 4C4VB 1THQA 3RBHA 4RJWA 4PUXA 2GE4A 1GFPA 3A0HO 1MM4A 2F1VA 4N59A 4B61A 4RLBA 4D5UA 3SZDA 2XE2A 2XE3A 3A2SX 7PRNA 1T16A 3LVYA 4FSOA 4AYNA 2Y7SA 5GTIO 2AF7A 3VZTX 3UU2A 3BRYA 2ES9A 4N75A 2XTRA 3POQA 3POUA 3DWOX 2JQYA 2OMFA 2FGRA 3DA4A 3C5OA 4PR7A 1ZHYA 3LK2B 3PORA 4RJXA 3SY9A 1ZHWA 3C1LA 2XTQA 4GCQA 3BS0A 1Q9GA 1GU9A 3VE1A 5G39A 5AFUL 3K19A 3WI5A 4AZLA 2N2MA 2YPVA 3VY8X 1PHOA 2JN8A 4G9QA 2AXTO 8PRNA 2F1TA 3QRAA 3LK41 3AA1A 3UAQA 4O4UA 4QQ1A 1BXWA 4AKRB 4K3CA 1KNCA 2QEUA 5DL6A 3PGRA 4XNKA 2XE5A 2K0LA 2W81C 2R4NA 3WI4A 3VZWX 3LK3A 4JFBA 5ADXL 2LHFA 2Y0LA 1PRNA 1IZNA 2MNHA 4U9CA 2X9KA 3T24A 2F1CX 4FZLA 4O49A 3JCUO 3DWNA 4GCSA 4UB6O 2ERVA 1E54A 3DA3A 4AYDC 2GMYA 2FGQX 4PJ0O 1GFNA 3SZVA 3AA0B 1HXUA 4O3ZA 2R4OA 2R4PA 3T0SA 2YNKA 1QJ8A 2QTKA 2Y0KA 6PRNA 3AA7A 3PQSA 5G26A 1VKEA 3UPGA 4C4VA 5IYUA 3SYSA 2ZLDA 4AYMC 3AAEB 2M07A 4AFKA 3D7IA 2J4UP 3HOEA 4C00A 3VZUX 4F4BA 4N74A 3SY7A 3NJTA 1LW1A 2Y0HA 4FRXA 5EE2A 3FYXA 3HW9A 3SYBA 5G3AA 5B5EO 2KC0A 4RLCA 1G90A 2PFXA 4AUIA 1HXXA 3A0BO 1P4TA 1ME5A 5DIKA 1ZHXA 2W80C 3PQUA 4K3BA 1GFQA 3LK2A 2J1NA 2KDYA 3PF1A 4AYEC 3HOLA 4C69X 2KXPB 2R8AA 4E1SA 3AAAB 4D64A 4BUMX 1BH3A 1OPFA 4D65A 2WVPA 4E1TA 1HXTA 4FZNA 5DL8A 3V8UA 4AYID 3KZIO 2Q0TA 2JMMA 5E79O 2CWQA 4O3XB 5GV0A 1P8CA 3JTYA 2XG6A 5DL5A 2XE1A 1MPFA 2M06A 3PGSA 3BEYA 2O4DA 4FRTA 2WJRA 2N2LA 4AKRA 3DZMA 3POXA 4FT6A 2PORA 5G38A 3AA6A 3GP6A 1ZHTA 4LSHA 4AKMA 2PRNA 4Z3TA 1QJ9A 2KZ7A 1QJPA 3VY9X 2MHLA 4G76A 4G75A 1S5LO 5PRNA 1MM5A 2IJCA 5KAIO 3TZGA 4JCHA 3QRCA 5DL7A 5D5DA 2OYOA 4FZMA 1BT9A 2R88A 5DIPA 5H2FO 2LFUA 3BRZA 2Y2XA 1ZHZA 5KAFO 5T5FA 3T20A 3G7GA 3AA1B 5ADXK 1T1LA 1GFOA 4KR8A 5GTHO 4GF4A 1OSMA 4GHBA 3PRNA 3AA0A 4FQEA 1GFMA 4LSEA 4KRAA 5TISO 2K4TA 3LK3B 3EMNX 5FVNA 4RL9A 5B66O 1IZNB 3AAEA 4FMSA 4O3YA 4N58A 3VE2A 2R89A 2PRRA 2ZFGA 1Q9FA 2R4LA 4FOZA 3NSGA 3PGUA 4FESA 2ODJA 4UB8O 4FUVA 2X27X 3HWBA 4GCPA 2XMXA 3AA6B 2OUWA 4IL6O 5JDPA 2IWWA 4LSFA 4CTDA 4KR4A 1ORMA
chains in the Genus database with same CATH topology
3LK41 3VY9X 2O4VA 2KZ7B 2MHLA 2F1TA 3LK42 4G76A 4LSIA 4AFKA 3D7IA 2J4UP 3O0EA 3AA1A 3HOEA 3UAQA 4O4UA 4QQ1A 3VZUX 4XNLA 4G75A 1BXWA 4F4BA 4AKRB 5PRNA 1MM5A 4FSPA 2IJCA 2KXPA 3SY7A 1KNCA 3AAAA 3KVDD 4JCHA 1LW1A 3QRCA 2Y0HA 5DL7A 3TZGA 2QEUA 1YS5A 4O3WA 5D5DA 5DL6A 2OYOA 3AA7B 4FRXA 4XNKA 3FYXA 1BT9A 4FZMA 5EE2A 5AFUK 3HW9A 3SYBA 1H6S1 4O4XA 2XE5A 1THQA 2KC0A 2K0LA 5DIPA 2W81C 4RLCA 3RBHA 1G90A 4RJWA 2LFUA 3VZWX 3LK3A 3WI4A 2Y2XA 4JFBA 3QRAA 2PFXA 4AUIA 1ZHZA 5ADXL 1HXXA 2LHFA 2Y0LA 4PUXA 5T5FA 3T20A 1P4TA 1ME5A 3G7GA 1PRNA 2GE4A 1GFPA 1IZNA 3AA1B 5ADXK 1GFOA 1MM4A 2F1VA 4KR8A 4N59A 4B61A 5DIKA 1ZHXA 4RLBA 4GF4A 2W80C 4D5UA 3PQUA 1GFQA 2MNHA 3LK2A 2J1NA 2KDYA 4AYEC 3HOLA 3SZDA 1OSMA 4C69X 2XE2A 2KXPB 2XE3A 3A2SX 3PRNA 3AA0A 4GHBA 1GFMA 4U9CA 4E1SA 7PRNA 3AAAB 4D64A 4LSEA 3T24A 4BUMX 4KRAA 4FZLA 1BH3A 4O49A 1OPFA 3LVYA 4FSOA 4D65A 4E1TA 4AYNA 1HXTA 2Y7SA 4FZNA 4GCSA 5DL8A 2AF7A 2K4TA 3V8UA 3VZTX 4AYID 3LK3B 2ERVA 2Q0TA 1E54A 3EMNX 5FVNA 3UU2A 2ES9A 3DA3A 2JMMA 2CWQA 4RL9A 4O3XB 2XTRA 3POQA 3POUA 5GV0A 1P8CA 1IZNB 3JTYA 4AYDC 2XG6A 2GMYA 3AAEA 5DL5A 2OMFA 2FGRA 2XE1A 3DA4A 1MPFA 2M06A 4FMSA 4O3YA 3C5OA 2FGQX 1ZHYA 4N58A 3LK2B 3VE2A 3BEYA 3PORA 2O4DA 2PRRA 1GFNA 4RJXA 3SZVA 3AA0B 3SY9A 1ZHWA 1HXUA 2ZFGA 4FRTA 1Q9FA 4FOZA 4O3ZA 2N2LA 3C1LA 2XTQA 4AKRA 3POXA 4FT6A 3T0SA 2PORA 2YNKA 4GCQA 1Q9GA 3NSGA 1QJ8A 4FESA 2ODJA 2QTKA 1GU9A 3VE1A 2Y0KA 4FUVA 6PRNA 2X27X 3HWBA 5AFUL 3AA7A 3PQSA 3K19A 5G26A 3WI5A 1VKEA 3AA6A 4GCPA 3UPGA 3GP6A 5IYUA 4AZLA 2XMXA 3SYSA 1ZHTA 3AA6B 2OUWA 2ZLDA 4LSHA 4AYMC 5JDPA 3AAEB 2N2MA 2YPVA 3VY8X 2PRNA 1PHOA 2JN8A 2M07A 1QJ9A 4AKMA 4LSFA 4Z3TA 2KZ7A 4G9QA 4KR4A 8PRNA 1QJPA 1ORMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LK4 1;  3LK3 A;  3LK4 2;  2KZ7 B;  5ADX L;  3AA1 A;  4AKR A;  3LK3 B;  1IZN A;  3AA1 B;  5ADX K;  4AKR B;  5AFU L;  2KXP A;  3AA7 A;  1IZN B;  3AA6 A;  3AAA A;  3LK2 A;  3AAE A;  2KXP B;  3AA7 B;  3AA6 B;  3AA0 A;  5AFU K;  3AAA B;  3LK2 B;  3AAE B;  3AA0 B;  2KZ7 A; 
#chains in the Genus database with same CATH topology
 3WU2 O;  2O4V A;  2KZ7 B;  3LK4 2;  4LSI A;  3O0E A;  4XNL A;  4FSP A;  2WJQ A;  2KXP A;  3AAA A;  3KVD D;  1YS5 A;  4O3W A;  2IWV A;  3AA7 B;  5AFU K;  1H6S 1;  4O4X A;  4C4V B;  1THQ A;  3RBH A;  4RJW A;  4PUX A;  2GE4 A;  1GFP A;  3A0H O;  1MM4 A;  2F1V A;  4N59 A;  4B61 A;  4RLB A;  4D5U A;  3SZD A;  2XE2 A;  2XE3 A;  3A2S X;  7PRN A;  1T16 A;  3LVY A;  4FSO A;  4AYN A;  2Y7S A;  5GTI O;  2AF7 A;  3VZT X;  3UU2 A;  3BRY A;  2ES9 A;  4N75 A;  2XTR A;  3POQ A;  3POU A;  3DWO X;  2JQY A;  2OMF A;  2FGR A;  3DA4 A;  3C5O A;  4PR7 A;  1ZHY A;  3LK2 B;  3POR A;  4RJX A;  3SY9 A;  1ZHW A;  3C1L A;  2XTQ A;  4GCQ A;  3BS0 A;  1Q9G A;  1GU9 A;  3VE1 A;  5G39 A;  5AFU L;  3K19 A;  3WI5 A;  4AZL A;  2N2M A;  2YPV A;  3VY8 X;  1PHO A;  2JN8 A;  4G9Q A;  2AXT O;  8PRN A;  2F1T A;  3QRA A;  3LK4 1;  3AA1 A;  3UAQ A;  4O4U A;  4QQ1 A;  1BXW A;  4AKR B;  4K3C A;  1KNC A;  2QEU A;  5DL6 A;  3PGR A;  4XNK A;  2XE5 A;  2K0L A;  2W81 C;  2R4N A;  3WI4 A;  3VZW X;  3LK3 A;  4JFB A;  5ADX L;  2LHF A;  2Y0L A;  1PRN A;  1IZN A;  2MNH A;  4U9C A;  2X9K A;  3T24 A;  2F1C X;  4FZL A;  4O49 A;  3JCU O;  3DWN A;  4GCS A;  4UB6 O;  2ERV A;  1E54 A;  3DA3 A;  4AYD C;  2GMY A;  2FGQ X;  4PJ0 O;  1GFN A;  3SZV A;  3AA0 B;  1HXU A;  4O3Z A;  2R4O A;  2R4P A;  3T0S A;  2YNK A;  1QJ8 A;  2QTK A;  2Y0K A;  6PRN A;  3AA7 A;  3PQS A;  5G26 A;  1VKE A;  3UPG A;  4C4V A;  5IYU A;  3SYS A;  2ZLD A;  4AYM C;  3AAE B;  2M07 A;  4AFK A;  3D7I A;  2J4U P;  3HOE A;  4C00 A;  3VZU X;  4F4B A;  4N74 A;  3SY7 A;  3NJT A;  1LW1 A;  2Y0H A;  4FRX A;  5EE2 A;  3FYX A;  3HW9 A;  3SYB A;  5G3A A;  5B5E O;  2KC0 A;  4RLC A;  1G90 A;  2PFX A;  4AUI A;  1HXX A;  3A0B O;  1P4T A;  1ME5 A;  5DIK A;  1ZHX A;  2W80 C;  3PQU A;  4K3B A;  1GFQ A;  3LK2 A;  2J1N A;  2KDY A;  3PF1 A;  4AYE C;  3HOL A;  4C69 X;  2KXP B;  2R8A A;  4E1S A;  3AAA B;  4D64 A;  4BUM X;  1BH3 A;  1OPF A;  4D65 A;  2WVP A;  4E1T A;  1HXT A;  4FZN A;  5DL8 A;  3V8U A;  4AYI D;  3KZI O;  2Q0T A;  2JMM A;  5E79 O;  2CWQ A;  4O3X B;  5GV0 A;  1P8C A;  3JTY A;  2XG6 A;  5DL5 A;  2XE1 A;  1MPF A;  2M06 A;  3PGS A;  3BEY A;  2O4D A;  4FRT A;  2WJR A;  2N2L A;  4AKR A;  3DZM A;  3POX A;  4FT6 A;  2POR A;  5G38 A;  3AA6 A;  3GP6 A;  1ZHT A;  4LSH A;  4AKM A;  2PRN A;  4Z3T A;  1QJ9 A;  2KZ7 A;  1QJP A;  3VY9 X;  2MHL A;  4G76 A;  4G75 A;  1S5L O;  5PRN A;  1MM5 A;  2IJC A;  5KAI O;  3TZG A;  4JCH A;  3QRC A;  5DL7 A;  5D5D A;  2OYO A;  4FZM A;  1BT9 A;  2R88 A;  5DIP A;  5H2F O;  2LFU A;  3BRZ A;  2Y2X A;  1ZHZ A;  5KAF O;  5T5F A;  3T20 A;  3G7G A;  3AA1 B;  5ADX K;  1T1L A;  1GFO A;  4KR8 A;  5GTH O;  4GF4 A;  1OSM A;  4GHB A;  3PRN A;  3AA0 A;  4FQE A;  1GFM A;  4LSE A;  4KRA A;  5TIS O;  2K4T A;  3LK3 B;  3EMN X;  5FVN A;  4RL9 A;  5B66 O;  1IZN B;  3AAE A;  4FMS A;  4O3Y A;  4N58 A;  3VE2 A;  2R89 A;  2PRR A;  2ZFG A;  1Q9F A;  2R4L A;  4FOZ A;  3NSG A;  3PGU A;  4FES A;  2ODJ A;  4UB8 O;  4FUV A;  2X27 X;  3HWB A;  4GCP A;  2XMX A;  3AA6 B;  2OUW A;  4IL6 O;  5JDP A;  2IWW A;  4LSF A;  4CTD A;  4KR4 A;  1ORM A; 
#chains in the Genus database with same CATH homology
 3LK4 1;  3VY9 X;  2O4V A;  2KZ7 B;  2MHL A;  2F1T A;  3LK4 2;  4G76 A;  4LSI A;  4AFK A;  3D7I A;  2J4U P;  3O0E A;  3AA1 A;  3HOE A;  3UAQ A;  4O4U A;  4QQ1 A;  3VZU X;  4XNL A;  4G75 A;  1BXW A;  4F4B A;  4AKR B;  5PRN A;  1MM5 A;  4FSP A;  2IJC A;  2KXP A;  3SY7 A;  1KNC A;  3AAA A;  3KVD D;  4JCH A;  1LW1 A;  3QRC A;  2Y0H A;  5DL7 A;  3TZG A;  2QEU A;  1YS5 A;  4O3W A;  5D5D A;  5DL6 A;  2OYO A;  3AA7 B;  4FRX A;  4XNK A;  3FYX A;  1BT9 A;  4FZM A;  5EE2 A;  5AFU K;  3HW9 A;  3SYB A;  1H6S 1;  4O4X A;  2XE5 A;  1THQ A;  2KC0 A;  2K0L A;  5DIP A;  2W81 C;  4RLC A;  3RBH A;  1G90 A;  4RJW A;  2LFU A;  3VZW X;  3LK3 A;  3WI4 A;  2Y2X A;  4JFB A;  3QRA A;  2PFX A;  4AUI A;  1ZHZ A;  5ADX L;  1HXX A;  2LHF A;  2Y0L A;  4PUX A;  5T5F A;  3T20 A;  1P4T A;  1ME5 A;  3G7G A;  1PRN A;  2GE4 A;  1GFP A;  1IZN A;  3AA1 B;  5ADX K;  1GFO A;  1MM4 A;  2F1V A;  4KR8 A;  4N59 A;  4B61 A;  5DIK A;  1ZHX A;  4RLB A;  4GF4 A;  2W80 C;  4D5U A;  3PQU A;  1GFQ A;  2MNH A;  3LK2 A;  2J1N A;  2KDY A;  4AYE C;  3HOL A;  3SZD A;  1OSM A;  4C69 X;  2XE2 A;  2KXP B;  2XE3 A;  3A2S X;  3PRN A;  3AA0 A;  4GHB A;  1GFM A;  4U9C A;  4E1S A;  7PRN A;  3AAA B;  4D64 A;  4LSE A;  3T24 A;  4BUM X;  4KRA A;  4FZL A;  1BH3 A;  4O49 A;  1OPF A;  3LVY A;  4FSO A;  4D65 A;  4E1T A;  4AYN A;  1HXT A;  2Y7S A;  4FZN A;  4GCS A;  5DL8 A;  2AF7 A;  2K4T A;  3V8U A;  3VZT X;  4AYI D;  3LK3 B;  2ERV A;  2Q0T A;  1E54 A;  3EMN X;  5FVN A;  3UU2 A;  2ES9 A;  3DA3 A;  2JMM A;  2CWQ A;  4RL9 A;  4O3X B;  2XTR A;  3POQ A;  3POU A;  5GV0 A;  1P8C A;  1IZN B;  3JTY A;  4AYD C;  2XG6 A;  2GMY A;  3AAE A;  5DL5 A;  2OMF A;  2FGR A;  2XE1 A;  3DA4 A;  1MPF A;  2M06 A;  4FMS A;  4O3Y A;  3C5O A;  2FGQ X;  1ZHY A;  4N58 A;  3LK2 B;  3VE2 A;  3BEY A;  3POR A;  2O4D A;  2PRR A;  1GFN A;  4RJX A;  3SZV A;  3AA0 B;  3SY9 A;  1ZHW A;  1HXU A;  2ZFG A;  4FRT A;  1Q9F A;  4FOZ A;  4O3Z A;  2N2L A;  3C1L A;  2XTQ A;  4AKR A;  3POX A;  4FT6 A;  3T0S A;  2POR A;  2YNK A;  4GCQ A;  1Q9G A;  3NSG A;  1QJ8 A;  4FES A;  2ODJ A;  2QTK A;  1GU9 A;  3VE1 A;  2Y0K A;  4FUV A;  6PRN A;  2X27 X;  3HWB A;  5AFU L;  3AA7 A;  3PQS A;  3K19 A;  5G26 A;  3WI5 A;  1VKE A;  3AA6 A;  4GCP A;  3UPG A;  3GP6 A;  5IYU A;  4AZL A;  2XMX A;  3SYS A;  1ZHT A;  3AA6 B;  2OUW A;  2ZLD A;  4LSH A;  4AYM C;  5JDP A;  3AAE B;  2N2M A;  2YPV A;  3VY8 X;  2PRN A;  1PHO A;  2JN8 A;  2M07 A;  1QJ9 A;  4AKM A;  4LSF A;  4Z3T A;  2KZ7 A;  4G9Q A;  4KR4 A;  8PRN A;  1QJP A;  1ORM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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