3LK2A

Crystal structure of capz bound to the uncapping motif from carmil
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
270
structure length
270
Chain Sequence
b'RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F-actin-capping protein subunit alpha-1
publication title Structural characterization of a capping protein interaction motif defines a family of actin filament regulators
doi rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 80
structure length 270
sequence length 270
ec nomenclature
pdb deposition date 2010-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3lk2A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3lk2A02
5ADXK 1IZNA 1IZNB 5AFUK 3AA6A 3AA6B 4AKRA 4AKRB 3AAEA 3AAEB 2KZ7A 2KZ7B 3LK2A 3LK2B 3AA0A 5ADXL 3AA1A 3AA0B 5AFUL 3AA1B 3LK3A 3LK3B 3LK42 3AA7A 3AA7B 3AAAA 3AAAB 2KXPA 2KXPB 3LK41
chains in the Genus database with same CATH superfamily
2JMMA 4FZMA 4AKMA 3AA6A 2KC0A 3AA6B 4PR7A 3QRAA 5JDPA 3SZDA 4BUMX 3JCUO 3BRZA 5G38A 3AA1B 4GCPA 3AA7A 3AA7B 1GFNA 2Y2XA 4N58A 2CWQA 4AYMC 3O0EA 1HXXA 4K3CA 2F1CX 3VE2A 1MPFA 2WVPA 5EE2A 3BS0A 3AAEA 3AAEB 5H2FO 2R4LA 2O4VA 5DL6A 1THQA 5DL7A 4C00A 1OSMA 1GU9A 4E1SA 2QEUA 5AFUK 1GFQA 4AYEC 1Q9FA 5PRNA 1GFPA 1PRNA 5ADXL 4FRTA 4FZNA 2J4UP 4RLCA 4RJWA 8PRNA 2LFUA 2R89A 4O4XA 3POQA 2M06A 5DIKA 3VZUX 1MM4A 2OUWA 1QJPA 4C4VA 4C4VB 5B66O 3GP6A 3HOLA 1VKEA 2IJCA 5KAIO 3A0HO 1Q9GA 3PGUA 3EMNX 1ZHZA 4FOZA 5GTHO 1G90A 1ORMA 3VZWX 4QQ1A 3LK41 5G3AA 4IL6O 4LSHA 4C69X 7PRNA 2PRNA 2YPVA 1ZHXA 1P4TA 3SYBA 3PGSA 1QJ8A 4N75A 4O49A 1P8CA 2XE5A 4RL9A 3WU2O 1H6S1 2XE1A 1BXWA 4N74A 4KR4A 2XTQA 3QRCA 2WJRA 4AYDC 2ERVA 2OMFA 3DWNA 1LW1A 1GFMA 4G75A 3V8UA 4G76A 2MHLA 5T5FA 3PQSA 3HWBA 4LSFA 3LK42 1T1LA 1ZHTA 2N2MA 3NSGA 4GCQA 3SY9A 2GMYA 2R88A 4O3YA 2AF7A 3T0SA 4D64A 2X9KA 2XE3A 4O3WA 3AA0A 1BT9A 3AA0B 5AFUL 4AUIA 1ZHYA 4O4UA 5E79O 1HXUA 4PUXA 1E54A 1HXTA 4GHBA 5ADXK 4E1TA 4FUVA 3PRNA 4G9QA 5B5EO 2W81C 2K0LA 2W80C 4FSPA 4PJ0O 4D65A 4AYID 2J1NA 3PF1A 3FYXA 3HOEA 2M07A 2YNKA 3T20A 2PFXA 2Q0TA 2XG6A 3AAAA 4KRAA 3AAAB 3A0BO 3D7IA 3WI4A 2FGRA 2R4OA 3WI5A 4U9CA 5FVNA 3VY8X 3C5OA 4B61A 1QJ9A 2N2LA 1KNCA 4XNKA 4UB6O 4FQEA 4KR8A 4D5UA 2WJQA 1PHOA 2KXPA 2KXPB 3BEYA 3PQUA 2F1TA 4LSEA 3KVDD 3G7GA 4UB8O 2GE4A 4JCHA 2R4NA 5D5DA 2F1VA 3DZMA 3TZGA 3SZVA 2ES9A 2IWWA 1IZNA 3PORA 1IZNB 2Y0HA 2PRRA 3T24A 3UAQA 2R8AA 4FSOA 3POXA 3POUA 3AA1A 4O3ZA 1OPFA 3DA3A 2JQYA 4RJXA 2Y0LA 4O3XB 3RBHA 2MNHA 4FRXA 2ZLDA 4JFBA 5G26A 2FGQX 1ZHWA 3NJTA 2JN8A 4AFKA 3DA4A 3KZIO 2ZFGA 3C1LA 4AKRA 1S5LO 4AKRB 3LVYA 3K19A 2KZ7A 3HW9A 2KZ7B 3PGRA 3LK2A 4FESA 3LK2B 3VZTX 4FZLA 3DWOX 2AXTO 2Y0KA 5KAFO 5DIPA 3LK3A 4RLBA 3LK3B 5IYUA 4GF4A 4FT6A 4K3BA 4LSIA 2LHFA 1MM5A 3UU2A 2XTRA 3JTYA 5GTIO 3UPGA 4F4BA 4Z3TA 2PORA 2K4TA 6PRNA 5DL8A 2O4DA 2XMXA 5GV0A 2ODJA 4FMSA 2IWVA 2R4PA 1BH3A 3A2SX 4XNLA 1ME5A 3SYSA 1T16A 3VY9X 5DL5A 2OYOA 2KDYA 3SY7A 2X27X 2QTKA 2Y7SA 4GCSA 5G39A 4N59A 4AZLA 4AYNA 1YS5A 3VE1A 5TISO 1GFOA 4CTDA 2XE2A 3BRYA
chains in the Genus database with same CATH topology
2JMMA 4FZMA 2FGQX 1ZHWA 5ADXK 2JN8A 4AFKA 4AKMA 4E1TA 3DA4A 3AA6A 2KC0A 3AA6B 4FUVA 4LSHA 3QRAA 4C69X 7PRNA 5JDPA 3PRNA 2PRNA 2YPVA 3SZDA 2ZFGA 3C1LA 4G9QA 4AKRA 1ZHXA 1P4TA 4AKRB 3LVYA 4BUMX 2W81C 2K0LA 2W80C 3K19A 2KZ7A 3HW9A 2KZ7B 4FESA 3LK2A 4FSPA 3LK2B 3SYBA 4AYID 3VZTX 4D65A 4FZLA 2Y0KA 5DIPA 3AA1B 3LK3A 4RLBA 3LK3B 1QJ8A 2J1NA 5IYUA 4GF4A 4GCPA 3FYXA 3AA7A 2M07A 2YNKA 3AA7B 3HOEA 4FT6A 3T20A 1GFNA 2Y2XA 2PFXA 2CWQA 2Q0TA 2XG6A 3O0EA 4LSIA 4N58A 3AAAA 1HXXA 3AAAB 4KRAA 4AYMC 3D7IA 3VE2A 3WI4A 2LHFA 4O49A 1P8CA 2FGRA 1MM5A 3UU2A 2XE5A 1MPFA 3WI5A 4RL9A 2XTRA 3JTYA 3UPGA 4U9CA 5FVNA 3VY8X 3C5OA 1H6S1 2XE1A 3AAEA 5EE2A 3AAEB 4B61A 1BXWA 4F4BA 1QJ9A 2N2LA 4KR4A 1KNCA 4XNKA 2XTQA 4KR8A 4D5UA 2O4VA 4Z3TA 2PORA 2K4TA 3QRCA 5DL6A 6PRNA 1THQA 5DL7A 1PHOA 5DL8A 1OSMA 1GU9A 4AYDC 2KXPA 2ERVA 2KXPB 2OMFA 2O4DA 2XMXA 1LW1A 4E1SA 1GFMA 5GV0A 3BEYA 4G75A 2ODJA 4FMSA 2QEUA 5AFUK 1GFQA 3PQUA 3V8UA 2F1TA 4LSEA 4AYEC 1Q9FA 5PRNA 3KVDD 3G7GA 1BH3A 1GFPA 3A2SX 2GE4A 4JCHA 4XNLA 1ME5A 4G76A 2MHLA 3SYSA 1PRNA 3PQSA 2OYOA 3HWBA 5DL5A 5T5FA 3VY9X 5ADXL 2KDYA 4FRTA 5D5DA 2F1VA 3SY7A 3TZGA 4LSFA 3SZVA 4FZNA 2X27X 2ES9A 3LK42 2J4UP 4RLCA 2N2MA 1ZHTA 2QTKA 3NSGA 4GCQA 4RJWA 2Y7SA 3SY9A 8PRNA 2LFUA 4O4XA 3POQA 2GMYA 2M06A 5DIKA 1IZNA 3PORA 1IZNB 4GCSA 4O3YA 1MM4A 3VZUX 2AF7A 2Y0HA 2PRRA 2OUWA 1QJPA 3T0SA 3T24A 3UAQA 4D64A 4N59A 2XE3A 4FSOA 4AYNA 4AZLA 1YS5A 3GP6A 3POXA 3HOLA 1VKEA 2IJCA 3VE1A 3POUA 4O3WA 3AA0A 1BT9A 3AA1A 3AA0B 4O3ZA 5AFUL 1Q9GA 1GFOA 4AUIA 1OPFA 1ZHYA 4O4UA 3EMNX 3DA3A 1HXUA 1ZHZA 4FOZA 4RJXA 2Y0LA 4O3XB 4PUXA 3RBHA 1ORMA 2MNHA 2XE2A 3VZWX 4QQ1A 1G90A 1E54A 4FRXA 1HXTA 2ZLDA 4GHBA 3LK41 4JFBA 5G26A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5ADX K;  1IZN A;  1IZN B;  5AFU K;  3AA6 A;  3AA6 B;  4AKR A;  4AKR B;  3AAE A;  3AAE B;  2KZ7 A;  2KZ7 B;  3LK2 A;  3LK2 B;  3AA0 A;  5ADX L;  3AA1 A;  3AA0 B;  5AFU L;  3AA1 B;  3LK3 A;  3LK3 B;  3LK4 2;  3AA7 A;  3AA7 B;  3AAA A;  3AAA B;  2KXP A;  2KXP B;  3LK4 1; 
#chains in the Genus database with same CATH topology
 2JMM A;  4FZM A;  4AKM A;  3AA6 A;  2KC0 A;  3AA6 B;  4PR7 A;  3QRA A;  5JDP A;  3SZD A;  4BUM X;  3JCU O;  3BRZ A;  5G38 A;  3AA1 B;  4GCP A;  3AA7 A;  3AA7 B;  1GFN A;  2Y2X A;  4N58 A;  2CWQ A;  4AYM C;  3O0E A;  1HXX A;  4K3C A;  2F1C X;  3VE2 A;  1MPF A;  2WVP A;  5EE2 A;  3BS0 A;  3AAE A;  3AAE B;  5H2F O;  2R4L A;  2O4V A;  5DL6 A;  1THQ A;  5DL7 A;  4C00 A;  1OSM A;  1GU9 A;  4E1S A;  2QEU A;  5AFU K;  1GFQ A;  4AYE C;  1Q9F A;  5PRN A;  1GFP A;  1PRN A;  5ADX L;  4FRT A;  4FZN A;  2J4U P;  4RLC A;  4RJW A;  8PRN A;  2LFU A;  2R89 A;  4O4X A;  3POQ A;  2M06 A;  5DIK A;  3VZU X;  1MM4 A;  2OUW A;  1QJP A;  4C4V A;  4C4V B;  5B66 O;  3GP6 A;  3HOL A;  1VKE A;  2IJC A;  5KAI O;  3A0H O;  1Q9G A;  3PGU A;  3EMN X;  1ZHZ A;  4FOZ A;  5GTH O;  1G90 A;  1ORM A;  3VZW X;  4QQ1 A;  3LK4 1;  5G3A A;  4IL6 O;  4LSH A;  4C69 X;  7PRN A;  2PRN A;  2YPV A;  1ZHX A;  1P4T A;  3SYB A;  3PGS A;  1QJ8 A;  4N75 A;  4O49 A;  1P8C A;  2XE5 A;  4RL9 A;  3WU2 O;  1H6S 1;  2XE1 A;  1BXW A;  4N74 A;  4KR4 A;  2XTQ A;  3QRC A;  2WJR A;  4AYD C;  2ERV A;  2OMF A;  3DWN A;  1LW1 A;  1GFM A;  4G75 A;  3V8U A;  4G76 A;  2MHL A;  5T5F A;  3PQS A;  3HWB A;  4LSF A;  3LK4 2;  1T1L A;  1ZHT A;  2N2M A;  3NSG A;  4GCQ A;  3SY9 A;  2GMY A;  2R88 A;  4O3Y A;  2AF7 A;  3T0S A;  4D64 A;  2X9K A;  2XE3 A;  4O3W A;  3AA0 A;  1BT9 A;  3AA0 B;  5AFU L;  4AUI A;  1ZHY A;  4O4U A;  5E79 O;  1HXU A;  4PUX A;  1E54 A;  1HXT A;  4GHB A;  5ADX K;  4E1T A;  4FUV A;  3PRN A;  4G9Q A;  5B5E O;  2W81 C;  2K0L A;  2W80 C;  4FSP A;  4PJ0 O;  4D65 A;  4AYI D;  2J1N A;  3PF1 A;  3FYX A;  3HOE A;  2M07 A;  2YNK A;  3T20 A;  2PFX A;  2Q0T A;  2XG6 A;  3AAA A;  4KRA A;  3AAA B;  3A0B O;  3D7I A;  3WI4 A;  2FGR A;  2R4O A;  3WI5 A;  4U9C A;  5FVN A;  3VY8 X;  3C5O A;  4B61 A;  1QJ9 A;  2N2L A;  1KNC A;  4XNK A;  4UB6 O;  4FQE A;  4KR8 A;  4D5U A;  2WJQ A;  1PHO A;  2KXP A;  2KXP B;  3BEY A;  3PQU A;  2F1T A;  4LSE A;  3KVD D;  3G7G A;  4UB8 O;  2GE4 A;  4JCH A;  2R4N A;  5D5D A;  2F1V A;  3DZM A;  3TZG A;  3SZV A;  2ES9 A;  2IWW A;  1IZN A;  3POR A;  1IZN B;  2Y0H A;  2PRR A;  3T24 A;  3UAQ A;  2R8A A;  4FSO A;  3POX A;  3POU A;  3AA1 A;  4O3Z A;  1OPF A;  3DA3 A;  2JQY A;  4RJX A;  2Y0L A;  4O3X B;  3RBH A;  2MNH A;  4FRX A;  2ZLD A;  4JFB A;  5G26 A;  2FGQ X;  1ZHW A;  3NJT A;  2JN8 A;  4AFK A;  3DA4 A;  3KZI O;  2ZFG A;  3C1L A;  4AKR A;  1S5L O;  4AKR B;  3LVY A;  3K19 A;  2KZ7 A;  3HW9 A;  2KZ7 B;  3PGR A;  3LK2 A;  4FES A;  3LK2 B;  3VZT X;  4FZL A;  3DWO X;  2AXT O;  2Y0K A;  5KAF O;  5DIP A;  3LK3 A;  4RLB A;  3LK3 B;  5IYU A;  4GF4 A;  4FT6 A;  4K3B A;  4LSI A;  2LHF A;  1MM5 A;  3UU2 A;  2XTR A;  3JTY A;  5GTI O;  3UPG A;  4F4B A;  4Z3T A;  2POR A;  2K4T A;  6PRN A;  5DL8 A;  2O4D A;  2XMX A;  5GV0 A;  2ODJ A;  4FMS A;  2IWV A;  2R4P A;  1BH3 A;  3A2S X;  4XNL A;  1ME5 A;  3SYS A;  1T16 A;  3VY9 X;  5DL5 A;  2OYO A;  2KDY A;  3SY7 A;  2X27 X;  2QTK A;  2Y7S A;  4GCS A;  5G39 A;  4N59 A;  4AZL A;  4AYN A;  1YS5 A;  3VE1 A;  5TIS O;  1GFO A;  4CTD A;  2XE2 A;  3BRY A; 
#chains in the Genus database with same CATH homology
 2JMM A;  4FZM A;  2FGQ X;  1ZHW A;  5ADX K;  2JN8 A;  4AFK A;  4AKM A;  4E1T A;  3DA4 A;  3AA6 A;  2KC0 A;  3AA6 B;  4FUV A;  4LSH A;  3QRA A;  4C69 X;  7PRN A;  5JDP A;  3PRN A;  2PRN A;  2YPV A;  3SZD A;  2ZFG A;  3C1L A;  4G9Q A;  4AKR A;  1ZHX A;  1P4T A;  4AKR B;  3LVY A;  4BUM X;  2W81 C;  2K0L A;  2W80 C;  3K19 A;  2KZ7 A;  3HW9 A;  2KZ7 B;  4FES A;  3LK2 A;  4FSP A;  3LK2 B;  3SYB A;  4AYI D;  3VZT X;  4D65 A;  4FZL A;  2Y0K A;  5DIP A;  3AA1 B;  3LK3 A;  4RLB A;  3LK3 B;  1QJ8 A;  2J1N A;  5IYU A;  4GF4 A;  4GCP A;  3FYX A;  3AA7 A;  2M07 A;  2YNK A;  3AA7 B;  3HOE A;  4FT6 A;  3T20 A;  1GFN A;  2Y2X A;  2PFX A;  2CWQ A;  2Q0T A;  2XG6 A;  3O0E A;  4LSI A;  4N58 A;  3AAA A;  1HXX A;  3AAA B;  4KRA A;  4AYM C;  3D7I A;  3VE2 A;  3WI4 A;  2LHF A;  4O49 A;  1P8C A;  2FGR A;  1MM5 A;  3UU2 A;  2XE5 A;  1MPF A;  3WI5 A;  4RL9 A;  2XTR A;  3JTY A;  3UPG A;  4U9C A;  5FVN A;  3VY8 X;  3C5O A;  1H6S 1;  2XE1 A;  3AAE A;  5EE2 A;  3AAE B;  4B61 A;  1BXW A;  4F4B A;  1QJ9 A;  2N2L A;  4KR4 A;  1KNC A;  4XNK A;  2XTQ A;  4KR8 A;  4D5U A;  2O4V A;  4Z3T A;  2POR A;  2K4T A;  3QRC A;  5DL6 A;  6PRN A;  1THQ A;  5DL7 A;  1PHO A;  5DL8 A;  1OSM A;  1GU9 A;  4AYD C;  2KXP A;  2ERV A;  2KXP B;  2OMF A;  2O4D A;  2XMX A;  1LW1 A;  4E1S A;  1GFM A;  5GV0 A;  3BEY A;  4G75 A;  2ODJ A;  4FMS A;  2QEU A;  5AFU K;  1GFQ A;  3PQU A;  3V8U A;  2F1T A;  4LSE A;  4AYE C;  1Q9F A;  5PRN A;  3KVD D;  3G7G A;  1BH3 A;  1GFP A;  3A2S X;  2GE4 A;  4JCH A;  4XNL A;  1ME5 A;  4G76 A;  2MHL A;  3SYS A;  1PRN A;  3PQS A;  2OYO A;  3HWB A;  5DL5 A;  5T5F A;  3VY9 X;  5ADX L;  2KDY A;  4FRT A;  5D5D A;  2F1V A;  3SY7 A;  3TZG A;  4LSF A;  3SZV A;  4FZN A;  2X27 X;  2ES9 A;  3LK4 2;  2J4U P;  4RLC A;  2N2M A;  1ZHT A;  2QTK A;  3NSG A;  4GCQ A;  4RJW A;  2Y7S A;  3SY9 A;  8PRN A;  2LFU A;  4O4X A;  3POQ A;  2GMY A;  2M06 A;  5DIK A;  1IZN A;  3POR A;  1IZN B;  4GCS A;  4O3Y A;  1MM4 A;  3VZU X;  2AF7 A;  2Y0H A;  2PRR A;  2OUW A;  1QJP A;  3T0S A;  3T24 A;  3UAQ A;  4D64 A;  4N59 A;  2XE3 A;  4FSO A;  4AYN A;  4AZL A;  1YS5 A;  3GP6 A;  3POX A;  3HOL A;  1VKE A;  2IJC A;  3VE1 A;  3POU A;  4O3W A;  3AA0 A;  1BT9 A;  3AA1 A;  3AA0 B;  4O3Z A;  5AFU L;  1Q9G A;  1GFO A;  4AUI A;  1OPF A;  1ZHY A;  4O4U A;  3EMN X;  3DA3 A;  1HXU A;  1ZHZ A;  4FOZ A;  4RJX A;  2Y0L A;  4O3X B;  4PUX A;  3RBH A;  1ORM A;  2MNH A;  2XE2 A;  3VZW X;  4QQ1 A;  1G90 A;  1E54 A;  4FRX A;  1HXT A;  2ZLD A;  4GHB A;  3LK4 1;  4JFB A;  5G26 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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