3LK2A

Crystal structure of capz bound to the uncapping motif from carmil
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
270
structure length
270
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F-actin-capping protein subunit alpha-1
publication title Structural characterization of a capping protein interaction motif defines a family of actin filament regulators
doi rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 80
structure length 270
sequence length 270
ec nomenclature
pdb deposition date 2010-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3lk2A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3lk2A02
5AFUL 3AA7A 5AFUK 4AKRB 3AAEB 3LK3B 2KZ7B 3AA0B 3AAAB 3AA6B 3AA7B 3AA1A 2KXPA 1IZNA 3LK42 3LK2A 3AA1B 2KXPB 5ADXL 5ADXK 1IZNB 3LK2B 4AKRA 3LK3A 3LK41 3AAEA 2KZ7A 3AA0A 3AAAA 3AA6A
chains in the Genus database with same CATH superfamily
2JMMA 1MM5A 1YS5A 3FYXA 4AYNA 4O3ZA 3PQUA 4LSFA 3QRCA 5ADXK 4C4VB 2F1CX 3WI4A 1S5LO 1Q9GA 2ES9A 5IYUA 2OYOA 2XE1A 4KR4A 4RLBA 5G38A 3QRAA 3SZVA 3PQSA 2LHFA 2R8AA 1ME5A 2N2LA 4FSOA 3NJTA 2PFXA 4FESA 4N75A 4O49A 2WVPA 2W81C 1ZHZA 4GCPA 3LVYA 2ERVA 4AKRA 4O4UA 2R88A 4FZMA 4O3WA 4FRXA 3POQA 4JFBA 3BS0A 5B66O 3SY9A 2PRNA 1ZHYA 3UPGA 1PHOA 5TISO 3RBHA 3G7GA 3LK42 4E1TA 3O0EA 4FRTA 1BH3A 2PORA 2KZ7A 3DA4A 3VE1A 5G3AA 1MM4A 3AA7A 2O4DA 3GP6A 4G9QA 3C5OA 2AF7A 3EMNX 4PR7A 2PRRA 3A0HO 4G76A 1GFPA 4B61A 3PRNA 5KAIO 5DL5A 1GFOA 5AFUK 2K4TA 4N58A 1BT9A 2YPVA 2KXPA 2FGQX 4XNLA 2GMYA 5DIKA 4G75A 4RL9A 5T5FA 5EE2A 3PF1A 3AA1B 4JCHA 1E54A 3POXA 4AYMC 4U9CA 4D64A 4AYDC 3SYSA 5GV0A 2K0LA 3AAEB 4AUIA 2ZLDA 2XG6A 3VZTX 2WJQA 4LSHA 4LSIA 4Z3TA 2F1TA 3NSGA 4KR8A 3LK2B 1P4TA 1OSMA 3WU2O 3T24A 2IWWA 3HW9A 3VY9X 3DA3A 7PRNA 4RLCA 1ZHXA 4C4VA 5DL8A 2R4NA 5D5DA 2XTRA 1GFMA 3SY7A 2F1VA 4E1SA 2XE3A 5H2FO 2XTQA 4AZLA 3WI5A 3LK41 3UU2A 1OPFA 3DWNA 5GTIO 4FZNA 4D5UA 3AA0B 4FQEA 3AA6B 1T1LA 5KAFO 4N59A 4FSPA 1VKEA 4XNKA 2KC0A 3POUA 4PUXA 4UB8O 1ZHWA 3D7IA 5JDPA 3VZUX 4UB6O 3KZIO 3AA7B 4PJ0O 3PGSA 4AYEC 4KRAA 3KVDD 3SZDA 2R4LA 2Y0KA 2CWQA 2QTKA 1BXWA 3PGRA 3VY8X 1MPFA 1IZNB 2X9KA 1T16A 2MNHA 3BRZA 2X27X 2OUWA 4GCQA 4AFKA 1GFQA 1ORMA 2R89A 2Y7SA 5FVNA 3AAAB 3PGUA 4FMSA 4FT6A 4GF4A 2QEUA 2KXPB 3VZWX 2O4VA 1HXTA 2IJCA 5G39A 2Y0LA 3LK3B 1LW1A 2W80C 6PRNA 2Q0TA 4AKMA 5DL6A 1QJ9A 3VE2A 1Q9FA 1HXXA 4GHBA 4O4XA 4O3YA 4AYID 3JTYA 2XE5A 2J4UP 4C00A 3SYBA 2FGRA 5DL7A 3LK2A 5G26A 3K19A 4O3XB 2R4PA 1HXUA 3C1LA 2WJRA 1PRNA 2XE2A 4GCSA 4AKRB 2OMFA 3TZGA 2J1NA 5GTHO 4CTDA 3A0BO 8PRNA 2Y2XA 4FZLA 2Y0HA 3T20A 4RJWA 2XMXA 5DIPA 3AA0A 3AA6A 5AFUL 2ZFGA 2JQYA 4F4BA 5E79O 2KZ7B 3HOLA 2M06A 2GE4A 2R4OA 4FUVA 5B5EO 1GU9A 1THQA 4D65A 2AXTO 2LFUA 1QJPA 2M07A 1P8CA 2YNKA 4LSEA 2ODJA 3UAQA 1ZHTA 1IZNA 3JCUO 3T0SA 2KDYA 4FOZA 3BRYA 3DZMA 3PORA 1G90A 2IWVA 5ADXL 4K3BA 1KNCA 2JN8A 4N74A 1QJ8A 3AAAA 4QQ1A 4IL6O 4BUMX 4C69X 3DWOX 1GFNA 3AA1A 5PRNA 3BEYA 1H6S1 3V8UA 4K3CA 3LK3A 3AAEA 4RJXA 3HOEA 3HWBA 2MHLA 2N2MA 3A2SX
chains in the Genus database with same CATH topology
5DL5A 1GFOA 2JMMA 3VZUX 2XE2A 4GCSA 5AFUK 4AKRB 1MM5A 2OMFA 2K4TA 4N58A 1YS5A 1BT9A 2YPVA 3AA7B 3TZGA 2KXPA 2J1NA 3FYXA 4AYNA 2FGQX 4XNLA 2GMYA 5DIKA 4G75A 4O3ZA 4KRAA 4RL9A 3KVDD 3PQUA 4LSFA 5T5FA 3SZDA 4AYEC 3QRCA 2Y0KA 5EE2A 2CWQA 8PRNA 2QTKA 3AA1B 1BXWA 3VY8X 2Y2XA 4FZLA 5ADXK 1MPFA 2Y0HA 3T20A 1IZNB 4JCHA 4RJWA 2MNHA 2XMXA 3WI4A 1E54A 2X27X 5DIPA 3POXA 4AYMC 2OUWA 3AA0A 4U9CA 1Q9GA 4D64A 3AA6A 4GCQA 2ES9A 4AYDC 3SYSA 5AFUL 5GV0A 4AFKA 1GFQA 2ZFGA 2K0LA 1ORMA 3AAEB 5IYUA 4F4BA 2OYOA 2XE1A 2Y7SA 4KR4A 4RLBA 3QRAA 2ZLDA 2KZ7B 2XG6A 3PQSA 5FVNA 3HOLA 3AAAB 3SZVA 3VZTX 2M06A 2LHFA 1ME5A 2N2LA 2GE4A 4FMSA 4LSHA 4LSIA 4Z3TA 4FUVA 4FSOA 1GU9A 4FT6A 4GF4A 2PFXA 2QEUA 1THQA 2F1TA 4FESA 2KXPB 4O49A 3NSGA 4D65A 3VZWX 2W81C 4KR8A 1ZHZA 4GCPA 2LFUA 1QJPA 3LVYA 2ERVA 3LK2B 4AKRA 2M07A 1P8CA 2O4VA 1HXTA 1P4TA 4O4UA 1OSMA 4FZMA 2YNKA 2IJCA 4O3WA 3T24A 4LSEA 4FRXA 3POQA 4JFBA 2Y0LA 3HW9A 3VY9X 3LK3B 3SY9A 1LW1A 2W80C 3DA3A 6PRNA 2PRNA 1ZHYA 2Q0TA 7PRNA 4RLCA 1ZHXA 4AKMA 2ODJA 3UAQA 1ZHTA 3UPGA 1PHOA 5DL6A 5DL8A 1IZNA 5D5DA 3T0SA 2XTRA 3RBHA 1GFMA 2KDYA 3G7GA 3LK42 4FOZA 1QJ9A 3SY7A 3PORA 3VE2A 1Q9FA 4E1TA 1G90A 5ADXL 2F1VA 3O0EA 1KNCA 1HXXA 4E1SA 2XE3A 2JN8A 4FRTA 4GHBA 1BH3A 4O4XA 2XTQA 4AZLA 3WI5A 1QJ8A 3LK41 3UU2A 2PORA 1OPFA 2KZ7A 3DA4A 4O3YA 3AAAA 4AYID 3VE1A 1MM4A 4QQ1A 3AA7A 4BUMX 2O4DA 3GP6A 4G9QA 4FZNA 4D5UA 3JTYA 2XE5A 4C69X 3AA0B 3C5OA 3AA6B 2AF7A 1GFNA 3A2SX 3AA1A 2J4UP 3EMNX 5PRNA 4N59A 3SYBA 2FGRA 4FSPA 5DL7A 3BEYA 2PRRA 3LK2A 1VKEA 4G76A 1GFPA 4XNKA 2KC0A 1H6S1 3POUA 4AUIA 3V8UA 4PUXA 5G26A 3K19A 4O3XB 4B61A 1HXUA 3C1LA 1ZHWA 3D7IA 5JDPA 3LK3A 3AAEA 4RJXA 3HOEA 3HWBA 2MHLA 2N2MA 1PRNA 3PRNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AFU L;  3AA7 A;  5AFU K;  4AKR B;  3AAE B;  3LK3 B;  2KZ7 B;  3AA0 B;  3AAA B;  3AA6 B;  3AA7 B;  3AA1 A;  2KXP A;  1IZN A;  3LK4 2;  3LK2 A;  3AA1 B;  2KXP B;  5ADX L;  5ADX K;  1IZN B;  3LK2 B;  4AKR A;  3LK3 A;  3LK4 1;  3AAE A;  2KZ7 A;  3AA0 A;  3AAA A;  3AA6 A; 
#chains in the Genus database with same CATH topology
 2JMM A;  1MM5 A;  1YS5 A;  3FYX A;  4AYN A;  4O3Z A;  3PQU A;  4LSF A;  3QRC A;  5ADX K;  4C4V B;  2F1C X;  3WI4 A;  1S5L O;  1Q9G A;  2ES9 A;  5IYU A;  2OYO A;  2XE1 A;  4KR4 A;  4RLB A;  5G38 A;  3QRA A;  3SZV A;  3PQS A;  2LHF A;  2R8A A;  1ME5 A;  2N2L A;  4FSO A;  3NJT A;  2PFX A;  4FES A;  4N75 A;  4O49 A;  2WVP A;  2W81 C;  1ZHZ A;  4GCP A;  3LVY A;  2ERV A;  4AKR A;  4O4U A;  2R88 A;  4FZM A;  4O3W A;  4FRX A;  3POQ A;  4JFB A;  3BS0 A;  5B66 O;  3SY9 A;  2PRN A;  1ZHY A;  3UPG A;  1PHO A;  5TIS O;  3RBH A;  3G7G A;  3LK4 2;  4E1T A;  3O0E A;  4FRT A;  1BH3 A;  2POR A;  2KZ7 A;  3DA4 A;  3VE1 A;  5G3A A;  1MM4 A;  3AA7 A;  2O4D A;  3GP6 A;  4G9Q A;  3C5O A;  2AF7 A;  3EMN X;  4PR7 A;  2PRR A;  3A0H O;  4G76 A;  1GFP A;  4B61 A;  3PRN A;  5KAI O;  5DL5 A;  1GFO A;  5AFU K;  2K4T A;  4N58 A;  1BT9 A;  2YPV A;  2KXP A;  2FGQ X;  4XNL A;  2GMY A;  5DIK A;  4G75 A;  4RL9 A;  5T5F A;  5EE2 A;  3PF1 A;  3AA1 B;  4JCH A;  1E54 A;  3POX A;  4AYM C;  4U9C A;  4D64 A;  4AYD C;  3SYS A;  5GV0 A;  2K0L A;  3AAE B;  4AUI A;  2ZLD A;  2XG6 A;  3VZT X;  2WJQ A;  4LSH A;  4LSI A;  4Z3T A;  2F1T A;  3NSG A;  4KR8 A;  3LK2 B;  1P4T A;  1OSM A;  3WU2 O;  3T24 A;  2IWW A;  3HW9 A;  3VY9 X;  3DA3 A;  7PRN A;  4RLC A;  1ZHX A;  4C4V A;  5DL8 A;  2R4N A;  5D5D A;  2XTR A;  1GFM A;  3SY7 A;  2F1V A;  4E1S A;  2XE3 A;  5H2F O;  2XTQ A;  4AZL A;  3WI5 A;  3LK4 1;  3UU2 A;  1OPF A;  3DWN A;  5GTI O;  4FZN A;  4D5U A;  3AA0 B;  4FQE A;  3AA6 B;  1T1L A;  5KAF O;  4N59 A;  4FSP A;  1VKE A;  4XNK A;  2KC0 A;  3POU A;  4PUX A;  4UB8 O;  1ZHW A;  3D7I A;  5JDP A;  3VZU X;  4UB6 O;  3KZI O;  3AA7 B;  4PJ0 O;  3PGS A;  4AYE C;  4KRA A;  3KVD D;  3SZD A;  2R4L A;  2Y0K A;  2CWQ A;  2QTK A;  1BXW A;  3PGR A;  3VY8 X;  1MPF A;  1IZN B;  2X9K A;  1T16 A;  2MNH A;  3BRZ A;  2X27 X;  2OUW A;  4GCQ A;  4AFK A;  1GFQ A;  1ORM A;  2R89 A;  2Y7S A;  5FVN A;  3AAA B;  3PGU A;  4FMS A;  4FT6 A;  4GF4 A;  2QEU A;  2KXP B;  3VZW X;  2O4V A;  1HXT A;  2IJC A;  5G39 A;  2Y0L A;  3LK3 B;  1LW1 A;  2W80 C;  6PRN A;  2Q0T A;  4AKM A;  5DL6 A;  1QJ9 A;  3VE2 A;  1Q9F A;  1HXX A;  4GHB A;  4O4X A;  4O3Y A;  4AYI D;  3JTY A;  2XE5 A;  2J4U P;  4C00 A;  3SYB A;  2FGR A;  5DL7 A;  3LK2 A;  5G26 A;  3K19 A;  4O3X B;  2R4P A;  1HXU A;  3C1L A;  2WJR A;  1PRN A;  2XE2 A;  4GCS A;  4AKR B;  2OMF A;  3TZG A;  2J1N A;  5GTH O;  4CTD A;  3A0B O;  8PRN A;  2Y2X A;  4FZL A;  2Y0H A;  3T20 A;  4RJW A;  2XMX A;  5DIP A;  3AA0 A;  3AA6 A;  5AFU L;  2ZFG A;  2JQY A;  4F4B A;  5E79 O;  2KZ7 B;  3HOL A;  2M06 A;  2GE4 A;  2R4O A;  4FUV A;  5B5E O;  1GU9 A;  1THQ A;  4D65 A;  2AXT O;  2LFU A;  1QJP A;  2M07 A;  1P8C A;  2YNK A;  4LSE A;  2ODJ A;  3UAQ A;  1ZHT A;  1IZN A;  3JCU O;  3T0S A;  2KDY A;  4FOZ A;  3BRY A;  3DZM A;  3POR A;  1G90 A;  2IWV A;  5ADX L;  4K3B A;  1KNC A;  2JN8 A;  4N74 A;  1QJ8 A;  3AAA A;  4QQ1 A;  4IL6 O;  4BUM X;  4C69 X;  3DWO X;  1GFN A;  3AA1 A;  5PRN A;  3BEY A;  1H6S 1;  3V8U A;  4K3C A;  3LK3 A;  3AAE A;  4RJX A;  3HOE A;  3HWB A;  2MHL A;  2N2M A;  3A2S X; 
#chains in the Genus database with same CATH homology
 5DL5 A;  1GFO A;  2JMM A;  3VZU X;  2XE2 A;  4GCS A;  5AFU K;  4AKR B;  1MM5 A;  2OMF A;  2K4T A;  4N58 A;  1YS5 A;  1BT9 A;  2YPV A;  3AA7 B;  3TZG A;  2KXP A;  2J1N A;  3FYX A;  4AYN A;  2FGQ X;  4XNL A;  2GMY A;  5DIK A;  4G75 A;  4O3Z A;  4KRA A;  4RL9 A;  3KVD D;  3PQU A;  4LSF A;  5T5F A;  3SZD A;  4AYE C;  3QRC A;  2Y0K A;  5EE2 A;  2CWQ A;  8PRN A;  2QTK A;  3AA1 B;  1BXW A;  3VY8 X;  2Y2X A;  4FZL A;  5ADX K;  1MPF A;  2Y0H A;  3T20 A;  1IZN B;  4JCH A;  4RJW A;  2MNH A;  2XMX A;  3WI4 A;  1E54 A;  2X27 X;  5DIP A;  3POX A;  4AYM C;  2OUW A;  3AA0 A;  4U9C A;  1Q9G A;  4D64 A;  3AA6 A;  4GCQ A;  2ES9 A;  4AYD C;  3SYS A;  5AFU L;  5GV0 A;  4AFK A;  1GFQ A;  2ZFG A;  2K0L A;  1ORM A;  3AAE B;  5IYU A;  4F4B A;  2OYO A;  2XE1 A;  2Y7S A;  4KR4 A;  4RLB A;  3QRA A;  2ZLD A;  2KZ7 B;  2XG6 A;  3PQS A;  5FVN A;  3HOL A;  3AAA B;  3SZV A;  3VZT X;  2M06 A;  2LHF A;  1ME5 A;  2N2L A;  2GE4 A;  4FMS A;  4LSH A;  4LSI A;  4Z3T A;  4FUV A;  4FSO A;  1GU9 A;  4FT6 A;  4GF4 A;  2PFX A;  2QEU A;  1THQ A;  2F1T A;  4FES A;  2KXP B;  4O49 A;  3NSG A;  4D65 A;  3VZW X;  2W81 C;  4KR8 A;  1ZHZ A;  4GCP A;  2LFU A;  1QJP A;  3LVY A;  2ERV A;  3LK2 B;  4AKR A;  2M07 A;  1P8C A;  2O4V A;  1HXT A;  1P4T A;  4O4U A;  1OSM A;  4FZM A;  2YNK A;  2IJC A;  4O3W A;  3T24 A;  4LSE A;  4FRX A;  3POQ A;  4JFB A;  2Y0L A;  3HW9 A;  3VY9 X;  3LK3 B;  3SY9 A;  1LW1 A;  2W80 C;  3DA3 A;  6PRN A;  2PRN A;  1ZHY A;  2Q0T A;  7PRN A;  4RLC A;  1ZHX A;  4AKM A;  2ODJ A;  3UAQ A;  1ZHT A;  3UPG A;  1PHO A;  5DL6 A;  5DL8 A;  1IZN A;  5D5D A;  3T0S A;  2XTR A;  3RBH A;  1GFM A;  2KDY A;  3G7G A;  3LK4 2;  4FOZ A;  1QJ9 A;  3SY7 A;  3POR A;  3VE2 A;  1Q9F A;  4E1T A;  1G90 A;  5ADX L;  2F1V A;  3O0E A;  1KNC A;  1HXX A;  4E1S A;  2XE3 A;  2JN8 A;  4FRT A;  4GHB A;  1BH3 A;  4O4X A;  2XTQ A;  4AZL A;  3WI5 A;  1QJ8 A;  3LK4 1;  3UU2 A;  2POR A;  1OPF A;  2KZ7 A;  3DA4 A;  4O3Y A;  3AAA A;  4AYI D;  3VE1 A;  1MM4 A;  4QQ1 A;  3AA7 A;  4BUM X;  2O4D A;  3GP6 A;  4G9Q A;  4FZN A;  4D5U A;  3JTY A;  2XE5 A;  4C69 X;  3AA0 B;  3C5O A;  3AA6 B;  2AF7 A;  1GFN A;  3A2S X;  3AA1 A;  2J4U P;  3EMN X;  5PRN A;  4N59 A;  3SYB A;  2FGR A;  4FSP A;  5DL7 A;  3BEY A;  2PRR A;  3LK2 A;  1VKE A;  4G76 A;  1GFP A;  4XNK A;  2KC0 A;  1H6S 1;  3POU A;  4AUI A;  3V8U A;  4PUX A;  5G26 A;  3K19 A;  4O3X B;  4B61 A;  1HXU A;  3C1L A;  1ZHW A;  3D7I A;  5JDP A;  3LK3 A;  3AAE A;  4RJX A;  3HOE A;  3HWB A;  2MHL A;  2N2M A;  1PRN A;  3PRN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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