3LKKA

Crystal structure of the isopentenyl phosphate kinase substrate complex
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
245
structure length
232
Chain Sequence
MMILKIGGSVITDKSAYRTARTYAIRSIVKVLSGIEDLVCVVHGGGSFGHIKAMEFGLPGPKNPRSSIGYSIVHRDMENLDLMVIDAMIEMGMRPISVPISALRYDGRFDYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDTNIGKKFESMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGTVIR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title X-ray structures of isopentenyl phosphate kinase.
pubmed doi rcsb
molecule keywords Gamma-glutamyl kinase related protein
molecule tags Transferase
source organism Thermoplasma acidophilum
total genus 78
structure length 232
sequence length 245
chains with identical sequence B
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2010-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3lkkA00
1YBDA 3QVHA 2AKOA 4USJA 3C1NA 2WE4A 2BRXA 3QVFA 2V5HA 2A1FA 3QUNA 3AAWA 3C1MA 2OGXB 3QUOA 3AB4A 4JZ7A 3L86A 3EK6A 3L76A 4NDPA 2W21A 4NDRA 4AB7A 2BNDA 3WWNA 4JZ9A 4NDOB 2J4LA 3T7BA 2WE5A 2BNFA 3LKKA 4A7WA 3KZFA 1E19A 2J4JA 2WXBA 4I49A 2E9YA 3D40A 2BNEA 3EK5A 1OHAA 2BUFA 4KZTA 3LL9A 4A7XA 3LL5A 4AXSA 2JJXA 2V4YA 3ZZFA 3K52A 4NDQB 4F6TB 2J0WA 3B8GA 3C20A 2VA1A 2RD5A 3ZZHA 2JJ4A 2J4KA 3AB2A 1OH9A 3U6UA 3D41A 4NDPB 3ZZGA 4NDRB 2HMFA 4NDOA 1GSJA 1B7BA 3K56A 2CDQA 2X2WA 1OHBA 1GS5A 4Q1TA 3S6HA 1Z9DA 3WWMA 2R8VA 3ZZIA 3D2PA 2AP9A 3QURA 2OGXA 2R98A 4JZ8A 4OLCA 2J0XA 2J5TA 3K4YA 3K4OA 3S6GA 2JI5A 3S6KA 2BTYA 3D2MA 2IJ9A 3TVIA 2BMUA 2BRIA 3NWYA 4NDQA 4F6TA 2J5VA
chains in the Genus database with same CATH superfamily
1YBDA 3QVHA 2AKOA 4USJA 3C1NA 2WE4A 2BRXA 3QVFA 2V5HA 2A1FA 3QUNA 3AAWA 3C1MA 2OGXB 3QUOA 3AB4A 4JZ7A 3L86A 3EK6A 3L76A 4NDPA 2W21A 4NDRA 4AB7A 2BNDA 3WWNA 4JZ9A 4NDOB 2J4LA 3T7BA 2WE5A 2BNFA 3LKKA 4A7WA 3KZFA 1E19A 2J4JA 2WXBA 4I49A 2E9YA 3D40A 2BNEA 3EK5A 1OHAA 2BUFA 4KZTA 3LL9A 4A7XA 3LL5A 4AXSA 2JJXA 2V4YA 3ZZFA 3K52A 4NDQB 4F6TB 2J0WA 3B8GA 3C20A 2VA1A 2RD5A 3ZZHA 2JJ4A 2J4KA 3AB2A 1OH9A 3U6UA 3D41A 4NDPB 3ZZGA 4NDRB 2HMFA 4NDOA 1GSJA 1B7BA 3K56A 2CDQA 2X2WA 1OHBA 1GS5A 4Q1TA 3S6HA 1Z9DA 3WWMA 2R8VA 3ZZIA 3D2PA 2AP9A 3QURA 2OGXA 2R98A 4JZ8A 4OLCA 2J0XA 2J5TA 3K4YA 3K4OA 3S6GA 2JI5A 3S6KA 2BTYA 3D2MA 2IJ9A 3TVIA 2BMUA 2BRIA 3NWYA 4NDQA 4F6TA 2J5VA
chains in the Genus database with same CATH topology
1YBDA 3QVHA 2AKOA 4USJA 3C1NA 2WE4A 2BRXA 3QVFA 2V5HA 2A1FA 3QUNA 3AAWA 3C1MA 2OGXB 3QUOA 3AB4A 4JZ7A 3L86A 3EK6A 3L76A 4NDPA 2W21A 4NDRA 4AB7A 2BNDA 3WWNA 4JZ9A 4NDOB 2J4LA 3T7BA 2WE5A 2BNFA 3LKKA 4A7WA 3KZFA 1E19A 2J4JA 2WXBA 4I49A 2E9YA 3D40A 2BNEA 3EK5A 1OHAA 2BUFA 4KZTA 3LL9A 4A7XA 3LL5A 4AXSA 2JJXA 2V4YA 3ZZFA 3K52A 4NDQB 4F6TB 2J0WA 3B8GA 3C20A 2VA1A 2RD5A 3ZZHA 2JJ4A 2J4KA 3AB2A 1OH9A 3U6UA 3D41A 4NDPB 3ZZGA 4NDRB 2HMFA 4NDOA 1GSJA 1B7BA 3K56A 2CDQA 2X2WA 1OHBA 1GS5A 4Q1TA 3S6HA 1Z9DA 3WWMA 2R8VA 3ZZIA 3D2PA 2AP9A 3QURA 2OGXA 2R98A 4JZ8A 4OLCA 2J0XA 2J5TA 3K4YA 3K4OA 3S6GA 2JI5A 3S6KA 2BTYA 3D2MA 2IJ9A 3TVIA 2BMUA 2BRIA 3NWYA 4NDQA 4F6TA 2J5VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YBD A;  3QVH A;  2AKO A;  4USJ A;  3C1N A;  2WE4 A;  2BRX A;  3QVF A;  2V5H A;  2A1F A;  3QUN A;  3AAW A;  3C1M A;  2OGX B;  3QUO A;  3AB4 A;  4JZ7 A;  3L86 A;  3EK6 A;  3L76 A;  4NDP A;  2W21 A;  4NDR A;  4AB7 A;  2BND A;  3WWN A;  4JZ9 A;  4NDO B;  2J4L A;  3T7B A;  2WE5 A;  2BNF A;  3LKK A;  4A7W A;  3KZF A;  1E19 A;  2J4J A;  2WXB A;  4I49 A;  2E9Y A;  3D40 A;  2BNE A;  3EK5 A;  1OHA A;  2BUF A;  4KZT A;  3LL9 A;  4A7X A;  3LL5 A;  4AXS A;  2JJX A;  2V4Y A;  3ZZF A;  3K52 A;  4NDQ B;  4F6T B;  2J0W A;  3B8G A;  3C20 A;  2VA1 A;  2RD5 A;  3ZZH A;  2JJ4 A;  2J4K A;  3AB2 A;  1OH9 A;  3U6U A;  3D41 A;  4NDP B;  3ZZG A;  4NDR B;  2HMF A;  4NDO A;  1GSJ A;  1B7B A;  3K56 A;  2CDQ A;  2X2W A;  1OHB A;  1GS5 A;  4Q1T A;  3S6H A;  1Z9D A;  3WWM A;  2R8V A;  3ZZI A;  3D2P A;  2AP9 A;  3QUR A;  2OGX A;  2R98 A;  4JZ8 A;  4OLC A;  2J0X A;  2J5T A;  3K4Y A;  3K4O A;  3S6G A;  2JI5 A;  3S6K A;  2BTY A;  3D2M A;  2IJ9 A;  3TVI A;  2BMU A;  2BRI A;  3NWY A;  4NDQ A;  4F6T A;  2J5V A; 
#chains in the Genus database with same CATH topology
 1YBD A;  3QVH A;  2AKO A;  4USJ A;  3C1N A;  2WE4 A;  2BRX A;  3QVF A;  2V5H A;  2A1F A;  3QUN A;  3AAW A;  3C1M A;  2OGX B;  3QUO A;  3AB4 A;  4JZ7 A;  3L86 A;  3EK6 A;  3L76 A;  4NDP A;  2W21 A;  4NDR A;  4AB7 A;  2BND A;  3WWN A;  4JZ9 A;  4NDO B;  2J4L A;  3T7B A;  2WE5 A;  2BNF A;  3LKK A;  4A7W A;  3KZF A;  1E19 A;  2J4J A;  2WXB A;  4I49 A;  2E9Y A;  3D40 A;  2BNE A;  3EK5 A;  1OHA A;  2BUF A;  4KZT A;  3LL9 A;  4A7X A;  3LL5 A;  4AXS A;  2JJX A;  2V4Y A;  3ZZF A;  3K52 A;  4NDQ B;  4F6T B;  2J0W A;  3B8G A;  3C20 A;  2VA1 A;  2RD5 A;  3ZZH A;  2JJ4 A;  2J4K A;  3AB2 A;  1OH9 A;  3U6U A;  3D41 A;  4NDP B;  3ZZG A;  4NDR B;  2HMF A;  4NDO A;  1GSJ A;  1B7B A;  3K56 A;  2CDQ A;  2X2W A;  1OHB A;  1GS5 A;  4Q1T A;  3S6H A;  1Z9D A;  3WWM A;  2R8V A;  3ZZI A;  3D2P A;  2AP9 A;  3QUR A;  2OGX A;  2R98 A;  4JZ8 A;  4OLC A;  2J0X A;  2J5T A;  3K4Y A;  3K4O A;  3S6G A;  2JI5 A;  3S6K A;  2BTY A;  3D2M A;  2IJ9 A;  3TVI A;  2BMU A;  2BRI A;  3NWY A;  4NDQ A;  4F6T A;  2J5V A; 
#chains in the Genus database with same CATH homology
 1YBD A;  3QVH A;  2AKO A;  4USJ A;  3C1N A;  2WE4 A;  2BRX A;  3QVF A;  2V5H A;  2A1F A;  3QUN A;  3AAW A;  3C1M A;  2OGX B;  3QUO A;  3AB4 A;  4JZ7 A;  3L86 A;  3EK6 A;  3L76 A;  4NDP A;  2W21 A;  4NDR A;  4AB7 A;  2BND A;  3WWN A;  4JZ9 A;  4NDO B;  2J4L A;  3T7B A;  2WE5 A;  2BNF A;  3LKK A;  4A7W A;  3KZF A;  1E19 A;  2J4J A;  2WXB A;  4I49 A;  2E9Y A;  3D40 A;  2BNE A;  3EK5 A;  1OHA A;  2BUF A;  4KZT A;  3LL9 A;  4A7X A;  3LL5 A;  4AXS A;  2JJX A;  2V4Y A;  3ZZF A;  3K52 A;  4NDQ B;  4F6T B;  2J0W A;  3B8G A;  3C20 A;  2VA1 A;  2RD5 A;  3ZZH A;  2JJ4 A;  2J4K A;  3AB2 A;  1OH9 A;  3U6U A;  3D41 A;  4NDP B;  3ZZG A;  4NDR B;  2HMF A;  4NDO A;  1GSJ A;  1B7B A;  3K56 A;  2CDQ A;  2X2W A;  1OHB A;  1GS5 A;  4Q1T A;  3S6H A;  1Z9D A;  3WWM A;  2R8V A;  3ZZI A;  3D2P A;  2AP9 A;  3QUR A;  2OGX A;  2R98 A;  4JZ8 A;  4OLC A;  2J0X A;  2J5T A;  3K4Y A;  3K4O A;  3S6G A;  2JI5 A;  3S6K A;  2BTY A;  3D2M A;  2IJ9 A;  3TVI A;  2BMU A;  2BRI A;  3NWY A;  4NDQ A;  4F6T A;  2J5V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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