3LKKA

Crystal structure of the isopentenyl phosphate kinase substrate complex
Total Genus 78
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
245
structure length
232
Chain Sequence
MMILKIGGSVITDKSAYRTARTYAIRSIVKVLSGIEDLVCVVHGGGSFGHIKAMEFGLPGPKNPRSSIGYSIVHRDMENLDLMVIDAMIEMGMRPISVPISALRYDGRFDYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDTNIGKKFESMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGTVIR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title X-ray structures of isopentenyl phosphate kinase.
pubmed doi rcsb
source organism Thermoplasma acidophilum
molecule tags Transferase
molecule keywords Gamma-glutamyl kinase related protein
total genus 78
structure length 232
sequence length 245
chains with identical sequence B
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2010-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3lkkA00
2BNDA 4NDQB 4AB7A 3LKKA 3QUOA 1GS5A 1YBDA 3LL9A 4NDQA 4AXSA 4NDRB 3D41A 3L86A 2R8VA 2BRXA 3LL5A 3QURA 3WWMA 3K52A 2JJXA 2R98A 1OHBA 2AP9A 3AAWA 3C20A 3ZZIA 4NDPA 2OGXA 4F6TB 2J5TA 2J0XA 1E19A 3ZZGA 4NDRA 3EK5A 3D2PA 2CDQA 2WXBA 3S6KA 2JJ4A 2W21A 3C1MA 2J4LA 2V5HA 2J4JA 2IJ9A 3QVFA 1OHAA 3NWYA 3ZZHA 4Q1TA 3QVHA 2BUFA 3K4YA 4NDOB 1GSJA 3D2MA 2BRIA 2A1FA 2WE4A 2VA1A 2V4YA 2HMFA 3S6HA 3D40A 3T7BA 3WWNA 2AKOA 3C1NA 4OLCA 3ZZFA 4NDOA 2JI5A 2BNFA 1OH9A 2J0WA 4JZ9A 4A7XA 2BTYA 2X2WA 4NDPB 4KZTA 3L76A 4USJA 3EK6A 3U6UA 2J5VA 2BNEA 3K56A 3KZFA 3S6GA 2BMUA 2OGXB 3QUNA 3AB4A 4F6TA 2RD5A 4I49A 3B8GA 1Z9DA 3AB2A 4JZ7A 2J4KA 3K4OA 4JZ8A 3TVIA 2E9YA 4A7WA 1B7BA 2WE5A
chains in the Genus database with same CATH superfamily
2BNDA 4NDQB 4AB7A 3LKKA 3QUOA 1GS5A 1YBDA 3LL9A 4NDQA 4AXSA 4NDRB 3D41A 3L86A 2R8VA 2BRXA 3LL5A 3QURA 3WWMA 3K52A 2JJXA 2R98A 1OHBA 2AP9A 3AAWA 3C20A 3ZZIA 4NDPA 2OGXA 4F6TB 2J5TA 2J0XA 1E19A 3ZZGA 4NDRA 3EK5A 3D2PA 2CDQA 2WXBA 3S6KA 2JJ4A 2W21A 3C1MA 2J4LA 2V5HA 2J4JA 2IJ9A 3QVFA 1OHAA 3NWYA 3ZZHA 4Q1TA 3QVHA 2BUFA 3K4YA 4NDOB 1GSJA 3D2MA 2BRIA 2A1FA 2WE4A 2VA1A 2V4YA 2HMFA 3S6HA 3D40A 3T7BA 3WWNA 2AKOA 3C1NA 4OLCA 3ZZFA 4NDOA 2JI5A 2BNFA 1OH9A 2J0WA 4JZ9A 4A7XA 2BTYA 2X2WA 4NDPB 4KZTA 3L76A 4USJA 3EK6A 3U6UA 2J5VA 2BNEA 3K56A 3KZFA 3S6GA 2BMUA 2OGXB 3QUNA 3AB4A 4F6TA 2RD5A 4I49A 3B8GA 1Z9DA 3AB2A 4JZ7A 2J4KA 3K4OA 4JZ8A 3TVIA 2E9YA 4A7WA 1B7BA 2WE5A
chains in the Genus database with same CATH topology
2BNDA 4NDQB 4AB7A 3LKKA 3QUOA 1GS5A 1YBDA 3LL9A 4NDQA 4AXSA 4NDRB 3D41A 3L86A 2R8VA 2BRXA 3LL5A 3QURA 3WWMA 3K52A 2JJXA 2R98A 1OHBA 2AP9A 3AAWA 3C20A 3ZZIA 4NDPA 2OGXA 4F6TB 2J5TA 2J0XA 1E19A 3ZZGA 4NDRA 3EK5A 3D2PA 2CDQA 2WXBA 3S6KA 2JJ4A 2W21A 3C1MA 2J4LA 2V5HA 2J4JA 2IJ9A 3QVFA 1OHAA 3NWYA 3ZZHA 4Q1TA 3QVHA 2BUFA 3K4YA 4NDOB 1GSJA 3D2MA 2BRIA 2A1FA 2WE4A 2VA1A 2V4YA 2HMFA 3S6HA 3D40A 3T7BA 3WWNA 2AKOA 3C1NA 4OLCA 3ZZFA 4NDOA 2JI5A 2BNFA 1OH9A 2J0WA 4JZ9A 4A7XA 2BTYA 2X2WA 4NDPB 4KZTA 3L76A 4USJA 3EK6A 3U6UA 2J5VA 2BNEA 3K56A 3KZFA 3S6GA 2BMUA 2OGXB 3QUNA 3AB4A 4F6TA 2RD5A 4I49A 3B8GA 1Z9DA 3AB2A 4JZ7A 2J4KA 3K4OA 4JZ8A 3TVIA 2E9YA 4A7WA 1B7BA 2WE5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BND A;  4NDQ B;  4AB7 A;  3LKK A;  3QUO A;  1GS5 A;  1YBD A;  3LL9 A;  4NDQ A;  4AXS A;  4NDR B;  3D41 A;  3L86 A;  2R8V A;  2BRX A;  3LL5 A;  3QUR A;  3WWM A;  3K52 A;  2JJX A;  2R98 A;  1OHB A;  2AP9 A;  3AAW A;  3C20 A;  3ZZI A;  4NDP A;  2OGX A;  4F6T B;  2J5T A;  2J0X A;  1E19 A;  3ZZG A;  4NDR A;  3EK5 A;  3D2P A;  2CDQ A;  2WXB A;  3S6K A;  2JJ4 A;  2W21 A;  3C1M A;  2J4L A;  2V5H A;  2J4J A;  2IJ9 A;  3QVF A;  1OHA A;  3NWY A;  3ZZH A;  4Q1T A;  3QVH A;  2BUF A;  3K4Y A;  4NDO B;  1GSJ A;  3D2M A;  2BRI A;  2A1F A;  2WE4 A;  2VA1 A;  2V4Y A;  2HMF A;  3S6H A;  3D40 A;  3T7B A;  3WWN A;  2AKO A;  3C1N A;  4OLC A;  3ZZF A;  4NDO A;  2JI5 A;  2BNF A;  1OH9 A;  2J0W A;  4JZ9 A;  4A7X A;  2BTY A;  2X2W A;  4NDP B;  4KZT A;  3L76 A;  4USJ A;  3EK6 A;  3U6U A;  2J5V A;  2BNE A;  3K56 A;  3KZF A;  3S6G A;  2BMU A;  2OGX B;  3QUN A;  3AB4 A;  4F6T A;  2RD5 A;  4I49 A;  3B8G A;  1Z9D A;  3AB2 A;  4JZ7 A;  2J4K A;  3K4O A;  4JZ8 A;  3TVI A;  2E9Y A;  4A7W A;  1B7B A;  2WE5 A; 
#chains in the Genus database with same CATH topology
 2BND A;  4NDQ B;  4AB7 A;  3LKK A;  3QUO A;  1GS5 A;  1YBD A;  3LL9 A;  4NDQ A;  4AXS A;  4NDR B;  3D41 A;  3L86 A;  2R8V A;  2BRX A;  3LL5 A;  3QUR A;  3WWM A;  3K52 A;  2JJX A;  2R98 A;  1OHB A;  2AP9 A;  3AAW A;  3C20 A;  3ZZI A;  4NDP A;  2OGX A;  4F6T B;  2J5T A;  2J0X A;  1E19 A;  3ZZG A;  4NDR A;  3EK5 A;  3D2P A;  2CDQ A;  2WXB A;  3S6K A;  2JJ4 A;  2W21 A;  3C1M A;  2J4L A;  2V5H A;  2J4J A;  2IJ9 A;  3QVF A;  1OHA A;  3NWY A;  3ZZH A;  4Q1T A;  3QVH A;  2BUF A;  3K4Y A;  4NDO B;  1GSJ A;  3D2M A;  2BRI A;  2A1F A;  2WE4 A;  2VA1 A;  2V4Y A;  2HMF A;  3S6H A;  3D40 A;  3T7B A;  3WWN A;  2AKO A;  3C1N A;  4OLC A;  3ZZF A;  4NDO A;  2JI5 A;  2BNF A;  1OH9 A;  2J0W A;  4JZ9 A;  4A7X A;  2BTY A;  2X2W A;  4NDP B;  4KZT A;  3L76 A;  4USJ A;  3EK6 A;  3U6U A;  2J5V A;  2BNE A;  3K56 A;  3KZF A;  3S6G A;  2BMU A;  2OGX B;  3QUN A;  3AB4 A;  4F6T A;  2RD5 A;  4I49 A;  3B8G A;  1Z9D A;  3AB2 A;  4JZ7 A;  2J4K A;  3K4O A;  4JZ8 A;  3TVI A;  2E9Y A;  4A7W A;  1B7B A;  2WE5 A; 
#chains in the Genus database with same CATH homology
 2BND A;  4NDQ B;  4AB7 A;  3LKK A;  3QUO A;  1GS5 A;  1YBD A;  3LL9 A;  4NDQ A;  4AXS A;  4NDR B;  3D41 A;  3L86 A;  2R8V A;  2BRX A;  3LL5 A;  3QUR A;  3WWM A;  3K52 A;  2JJX A;  2R98 A;  1OHB A;  2AP9 A;  3AAW A;  3C20 A;  3ZZI A;  4NDP A;  2OGX A;  4F6T B;  2J5T A;  2J0X A;  1E19 A;  3ZZG A;  4NDR A;  3EK5 A;  3D2P A;  2CDQ A;  2WXB A;  3S6K A;  2JJ4 A;  2W21 A;  3C1M A;  2J4L A;  2V5H A;  2J4J A;  2IJ9 A;  3QVF A;  1OHA A;  3NWY A;  3ZZH A;  4Q1T A;  3QVH A;  2BUF A;  3K4Y A;  4NDO B;  1GSJ A;  3D2M A;  2BRI A;  2A1F A;  2WE4 A;  2VA1 A;  2V4Y A;  2HMF A;  3S6H A;  3D40 A;  3T7B A;  3WWN A;  2AKO A;  3C1N A;  4OLC A;  3ZZF A;  4NDO A;  2JI5 A;  2BNF A;  1OH9 A;  2J0W A;  4JZ9 A;  4A7X A;  2BTY A;  2X2W A;  4NDP B;  4KZT A;  3L76 A;  4USJ A;  3EK6 A;  3U6U A;  2J5V A;  2BNE A;  3K56 A;  3KZF A;  3S6G A;  2BMU A;  2OGX B;  3QUN A;  3AB4 A;  4F6T A;  2RD5 A;  4I49 A;  3B8G A;  1Z9D A;  3AB2 A;  4JZ7 A;  2J4K A;  3K4O A;  4JZ8 A;  3TVI A;  2E9Y A;  4A7W A;  1B7B A;  2WE5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...