3LKLA

Crystal structure of the c-terminal domain of anti-sigma factor antagonist stas from rhodobacter sphaeroides
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
93
structure length
93
Chain Sequence
NAFAVSSELSACGRARTYRVEGQLFYGSVEDFMAAFDFREPLERVTIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGMNEASETLVDRL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Antisigma-factor antagonist STAS
publication title Crystal structure of the C-terminal domain of Anti-Sigma factor antagonist STAS from Rhodobacter sphaeroides
rcsb
source organism Rhodobacter sphaeroides
total genus 25
structure length 93
sequence length 93
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-01-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 3lklA00
3IH8A 3T6OA 3IHBA 4HYLA 5EUUA 1T6RA 3OIZA 3AGEA 3F43A 3LKLA 1BUZA 1H4ZA 3LLOA 1SBOA 3AGDA 3OIRA 1H4YA 5EUSA 1TH8B 5EUXA 1TIDB 5EUWA 3ZXNA 4DGFA 3IHAA 3MGLA 1THNB 5EUZA 3ZTBA 2VY9A 3IH9A 2KLNA 4QTPA 5EZBA 4DGHA 1VC1A 1H4XA 2KA5A 3NY7A 1TILB 3IF5A 1AUZA 4XS5A
chains in the Genus database with same CATH superfamily
4AEJA 3IH8A 1FCFA 4L8KA 3JU4A 1T6RA 1K32A 3OIZA 3DUPA 3GVLA 2OASA 1FC6A 1N6EA 3D3UA 4DGFA 2RRLA 1THNB 1HF2A 1FC7A 3DJAA 3IH9A 3GHFA 1H4XA 2DXLA 3IF5A 1FC9A 1WXXA 3IHBA 2DXNA 3LDFA 3LLOA 2ZO9B 1SBOA 3GVKA 5EUSA 3MGLA 5EZBA 1BPLA 4DGHA 1N6DA 1TILB 1AUZA 1V0EA 3T6OA 4GHNA 3LKLA 3DORA 4AE2A 3V97A 1H4YA 1TH8B 5EUXA 1TIDB 3C0KA 3IHAA 3D03A 3GMFA 5EUZA 2KLNA 4L1CA 2KA5A 1N6FA 3MOGA 3EH7A 4JC0A 1V0FA 2AS0A 1WXWA 4XS5A 2B78A 4HYLA 5EUUA 4DMGA 3GK7A 3AGEA 2ZOAA 3F43A 1BUZA 1H4ZA 3AGDA 3OIRA 3VSEA 3K50A 3ZXNA 5EUWA 1J7XA 3ZTBA 2VY9A 2CWWA 4QTPA 1VC1A 3GVJA 3NY7A 3QDQA 4HIZA 3V8VA
chains in the Genus database with same CATH topology
3IH8A 3T6OA 3IHBA 4HYLA 5EUUA 1T6RA 3OIZA 3AGEA 3F43A 3LKLA 1BUZA 1H4ZA 3LLOA 1SBOA 3AGDA 3OIRA 1H4YA 5EUSA 1TH8B 5EUXA 1TIDB 5EUWA 3ZXNA 4DGFA 3IHAA 3MGLA 1THNB 5EUZA 3ZTBA 2VY9A 3IH9A 2KLNA 4QTPA 5EZBA 4DGHA 1VC1A 1H4XA 2KA5A 3NY7A 1TILB 3IF5A 1AUZA 4XS5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IH8 A;  3T6O A;  3IHB A;  4HYL A;  5EUU A;  1T6R A;  3OIZ A;  3AGE A;  3F43 A;  3LKL A;  1BUZ A;  1H4Z A;  3LLO A;  1SBO A;  3AGD A;  3OIR A;  1H4Y A;  5EUS A;  1TH8 B;  5EUX A;  1TID B;  5EUW A;  3ZXN A;  4DGF A;  3IHA A;  3MGL A;  1THN B;  5EUZ A;  3ZTB A;  2VY9 A;  3IH9 A;  2KLN A;  4QTP A;  5EZB A;  4DGH A;  1VC1 A;  1H4X A;  2KA5 A;  3NY7 A;  1TIL B;  3IF5 A;  1AUZ A;  4XS5 A; 
#chains in the Genus database with same CATH topology
 4AEJ A;  3IH8 A;  1FCF A;  4L8K A;  3JU4 A;  1T6R A;  1K32 A;  3OIZ A;  3DUP A;  3GVL A;  2OAS A;  1FC6 A;  1N6E A;  3D3U A;  4DGF A;  2RRL A;  1THN B;  1HF2 A;  1FC7 A;  3DJA A;  3IH9 A;  3GHF A;  1H4X A;  2DXL A;  3IF5 A;  1FC9 A;  1WXX A;  3IHB A;  2DXN A;  3LDF A;  3LLO A;  2ZO9 B;  1SBO A;  3GVK A;  5EUS A;  3MGL A;  5EZB A;  1BPL A;  4DGH A;  1N6D A;  1TIL B;  1AUZ A;  1V0E A;  3T6O A;  4GHN A;  3LKL A;  3DOR A;  4AE2 A;  3V97 A;  1H4Y A;  1TH8 B;  5EUX A;  1TID B;  3C0K A;  3IHA A;  3D03 A;  3GMF A;  5EUZ A;  2KLN A;  4L1C A;  2KA5 A;  1N6F A;  3MOG A;  3EH7 A;  4JC0 A;  1V0F A;  2AS0 A;  1WXW A;  4XS5 A;  2B78 A;  4HYL A;  5EUU A;  4DMG A;  3GK7 A;  3AGE A;  2ZOA A;  3F43 A;  1BUZ A;  1H4Z A;  3AGD A;  3OIR A;  3VSE A;  3K50 A;  3ZXN A;  5EUW A;  1J7X A;  3ZTB A;  2VY9 A;  2CWW A;  4QTP A;  1VC1 A;  3GVJ A;  3NY7 A;  3QDQ A;  4HIZ A;  3V8V A; 
#chains in the Genus database with same CATH homology
 3IH8 A;  3T6O A;  3IHB A;  4HYL A;  5EUU A;  1T6R A;  3OIZ A;  3AGE A;  3F43 A;  3LKL A;  1BUZ A;  1H4Z A;  3LLO A;  1SBO A;  3AGD A;  3OIR A;  1H4Y A;  5EUS A;  1TH8 B;  5EUX A;  1TID B;  5EUW A;  3ZXN A;  4DGF A;  3IHA A;  3MGL A;  1THN B;  5EUZ A;  3ZTB A;  2VY9 A;  3IH9 A;  2KLN A;  4QTP A;  5EZB A;  4DGH A;  1VC1 A;  1H4X A;  2KA5 A;  3NY7 A;  1TIL B;  3IF5 A;  1AUZ A;  4XS5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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