3LKYA

Monomeric griffithsin with a single gly-ser insertion
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
123
structure length
123
Chain Sequence
SLTHRKFGGSGGSPFSGSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNMGRRFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords Griffithsin
publication title Monomerization of viral entry inhibitor griffithsin elucidates the relationship between multivalent binding to carbohydrates and anti-HIV activity.
pubmed doi rcsb
source organism Griffithsia
total genus 24
structure length 123
sequence length 123
ec nomenclature
pdb deposition date 2010-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3lkyA00
4PITA 3LKYA 3LLZA 4PIFA 4R6RA 3AQGA 1J4TA 3MITA 4PIKA 1C3NA 1KU8A 1VBOA 4MQ0A 3LLYA 3R51A 3R52A 1KUJA 1M26A 3MIUA 1XXQA 2BMZA 1WS5A 1UGWC 1C3KA 1JOTA 5J50A 3WOCA 4GX7A 2HYQA 2BMYA 2BN0A 1TOQA 2NU5A 5J51A 3R50A 1PXDA 4R6PA 2GTYA 1WS5C 3LM1A 2GUCA 4AKCA 5J4TA 1C3MA 3VZFA 3APAA 3MIVA 1UGYA 3LL2A 4AK4A 4R6OA 3VZGA 4R6NA 4PIUA 4AKBA 5AV7A 5JM1A 3WOBA 1X1VA 3LL1A 2GUEA 4R6QA 2GUDA 1WS4A 1VBPA 1JACA 1UH1A 2NUOA 3VZEA 3LL0A 1UGXA 3P8SA 1XXRA 2GUXA 2HYRA 1TP8A 1WS4C 3VY6A 1ZGSA 1UGWA 1ZGRA 5BN6E 5EXGA 4WOGA 3O44A 4DDNA 4AKDA 5J4XA 2JZ4A 1J4SA 3VY7A 1UGYC 1OUWA 1UH0A 1XEZA 1J4UA
chains in the Genus database with same CATH superfamily
4PITA 4MOAA 1VMOA 3LKYA 3LLZA 4PIFA 4R6RA 3AQGA 1J4TA 4W8JA 3MITA 4PIKA 1C3NA 1KU8A 1VBOA 4MQ0A 1DLCA 3LLYA 2C9KA 3R51A 3R52A 1KUJA 1M26A 3MIUA 1XXQA 2BMZA 1WS5A 1UGWC 1C3KA 1JOTA 5J50A 3WOCA 4GX7A 2HYQA 2BMYA 2BN0A 1TOQA 2NU5A 5J51A 3R50A 4QX2A 1PXDA 4R6PA 1W99A 2GTYA 1WS5C 3LM1A 2GUCA 4AKCA 5J4TA 1C3MA 4D8MA 3VZFA 3APAA 4QX1A 4QX3A 3MIVA 1UGYA 3LL2A 4AK4A 4R6OA 3VZGA 4R6NA 2QP2A 4PIUA 4AKBA 5AV7A 5JM1A 3WOBA 1X1VA 3LL1A 2GUEA 4R6QA 3EB7A 2GUDA 4ARXA 1WS4A 1VBPA 1JACA 1UH1A 1JI6A 2NUOA 3VZEA 3LL0A 1UGXA 1I5PA 1CIYA 3P8SA 1XXRA 2GUXA 2HYRA 1TP8A 1WS4C 3VY6A 1ZGSA 1UGWA 1ZGRA 5BN6E 3TOWA 4QX0A 4ARYA 5EXGA 4WOGA 3O44A 4DDNA 4AKDA 5J4XA 2JZ4A 1J4SA 3VY7A 1UGYC 1OUWA 1UH0A 1XEZA 1J4UA
chains in the Genus database with same CATH topology
4PITA 3LKYA 3LLZA 4PIFA 4R6RA 3AQGA 1J4TA 3MITA 4PIKA 1C3NA 1KU8A 1VBOA 4MQ0A 3LLYA 3R51A 3R52A 1KUJA 1M26A 3MIUA 1XXQA 2BMZA 1WS5A 1UGWC 1C3KA 1JOTA 5J50A 3WOCA 4GX7A 2HYQA 2BMYA 2BN0A 1TOQA 2NU5A 5J51A 3R50A 1PXDA 4R6PA 2GTYA 1WS5C 3LM1A 2GUCA 4AKCA 5J4TA 1C3MA 3VZFA 3APAA 3MIVA 1UGYA 3LL2A 4AK4A 4R6OA 3VZGA 4R6NA 4PIUA 4AKBA 5AV7A 5JM1A 3WOBA 1X1VA 3LL1A 2GUEA 4R6QA 2GUDA 1WS4A 1VBPA 1JACA 1UH1A 2NUOA 3VZEA 3LL0A 1UGXA 3P8SA 1XXRA 2GUXA 2HYRA 1TP8A 1WS4C 3VY6A 1ZGSA 1UGWA 1ZGRA 5BN6E 5EXGA 4WOGA 3O44A 4DDNA 4AKDA 5J4XA 2JZ4A 1J4SA 3VY7A 1UGYC 1OUWA 1UH0A 1XEZA 1J4UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PIT A;  3LKY A;  3LLZ A;  4PIF A;  4R6R A;  3AQG A;  1J4T A;  3MIT A;  4PIK A;  1C3N A;  1KU8 A;  1VBO A;  4MQ0 A;  3LLY A;  3R51 A;  3R52 A;  1KUJ A;  1M26 A;  3MIU A;  1XXQ A;  2BMZ A;  1WS5 A;  1UGW C;  1C3K A;  1JOT A;  5J50 A;  3WOC A;  4GX7 A;  2HYQ A;  2BMY A;  2BN0 A;  1TOQ A;  2NU5 A;  5J51 A;  3R50 A;  1PXD A;  4R6P A;  2GTY A;  1WS5 C;  3LM1 A;  2GUC A;  4AKC A;  5J4T A;  1C3M A;  3VZF A;  3APA A;  3MIV A;  1UGY A;  3LL2 A;  4AK4 A;  4R6O A;  3VZG A;  4R6N A;  4PIU A;  4AKB A;  5AV7 A;  5JM1 A;  3WOB A;  1X1V A;  3LL1 A;  2GUE A;  4R6Q A;  2GUD A;  1WS4 A;  1VBP A;  1JAC A;  1UH1 A;  2NUO A;  3VZE A;  3LL0 A;  1UGX A;  3P8S A;  1XXR A;  2GUX A;  2HYR A;  1TP8 A;  1WS4 C;  3VY6 A;  1ZGS A;  1UGW A;  1ZGR A;  5BN6 E;  5EXG A;  4WOG A;  3O44 A;  4DDN A;  4AKD A;  5J4X A;  2JZ4 A;  1J4S A;  3VY7 A;  1UGY C;  1OUW A;  1UH0 A;  1XEZ A;  1J4U A; 
#chains in the Genus database with same CATH topology
 4PIT A;  4MOA A;  1VMO A;  3LKY A;  3LLZ A;  4PIF A;  4R6R A;  3AQG A;  1J4T A;  4W8J A;  3MIT A;  4PIK A;  1C3N A;  1KU8 A;  1VBO A;  4MQ0 A;  1DLC A;  3LLY A;  2C9K A;  3R51 A;  3R52 A;  1KUJ A;  1M26 A;  3MIU A;  1XXQ A;  2BMZ A;  1WS5 A;  1UGW C;  1C3K A;  1JOT A;  5J50 A;  3WOC A;  4GX7 A;  2HYQ A;  2BMY A;  2BN0 A;  1TOQ A;  2NU5 A;  5J51 A;  3R50 A;  4QX2 A;  1PXD A;  4R6P A;  1W99 A;  2GTY A;  1WS5 C;  3LM1 A;  2GUC A;  4AKC A;  5J4T A;  1C3M A;  4D8M A;  3VZF A;  3APA A;  4QX1 A;  4QX3 A;  3MIV A;  1UGY A;  3LL2 A;  4AK4 A;  4R6O A;  3VZG A;  4R6N A;  2QP2 A;  4PIU A;  4AKB A;  5AV7 A;  5JM1 A;  3WOB A;  1X1V A;  3LL1 A;  2GUE A;  4R6Q A;  3EB7 A;  2GUD A;  4ARX A;  1WS4 A;  1VBP A;  1JAC A;  1UH1 A;  1JI6 A;  2NUO A;  3VZE A;  3LL0 A;  1UGX A;  1I5P A;  1CIY A;  3P8S A;  1XXR A;  2GUX A;  2HYR A;  1TP8 A;  1WS4 C;  3VY6 A;  1ZGS A;  1UGW A;  1ZGR A;  5BN6 E;  3TOW A;  4QX0 A;  4ARY A;  5EXG A;  4WOG A;  3O44 A;  4DDN A;  4AKD A;  5J4X A;  2JZ4 A;  1J4S A;  3VY7 A;  1UGY C;  1OUW A;  1UH0 A;  1XEZ A;  1J4U A; 
#chains in the Genus database with same CATH homology
 4PIT A;  3LKY A;  3LLZ A;  4PIF A;  4R6R A;  3AQG A;  1J4T A;  3MIT A;  4PIK A;  1C3N A;  1KU8 A;  1VBO A;  4MQ0 A;  3LLY A;  3R51 A;  3R52 A;  1KUJ A;  1M26 A;  3MIU A;  1XXQ A;  2BMZ A;  1WS5 A;  1UGW C;  1C3K A;  1JOT A;  5J50 A;  3WOC A;  4GX7 A;  2HYQ A;  2BMY A;  2BN0 A;  1TOQ A;  2NU5 A;  5J51 A;  3R50 A;  1PXD A;  4R6P A;  2GTY A;  1WS5 C;  3LM1 A;  2GUC A;  4AKC A;  5J4T A;  1C3M A;  3VZF A;  3APA A;  3MIV A;  1UGY A;  3LL2 A;  4AK4 A;  4R6O A;  3VZG A;  4R6N A;  4PIU A;  4AKB A;  5AV7 A;  5JM1 A;  3WOB A;  1X1V A;  3LL1 A;  2GUE A;  4R6Q A;  2GUD A;  1WS4 A;  1VBP A;  1JAC A;  1UH1 A;  2NUO A;  3VZE A;  3LL0 A;  1UGX A;  3P8S A;  1XXR A;  2GUX A;  2HYR A;  1TP8 A;  1WS4 C;  3VY6 A;  1ZGS A;  1UGW A;  1ZGR A;  5BN6 E;  5EXG A;  4WOG A;  3O44 A;  4DDN A;  4AKD A;  5J4X A;  2JZ4 A;  1J4S A;  3VY7 A;  1UGY C;  1OUW A;  1UH0 A;  1XEZ A;  1J4U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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