3LLLA

Crystal structure of mouse pacsin2 f-bar domain
Total Genus 105
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
287
structure length
287
Chain Sequence
DSFWEVGNYKRTVKRIDDGHRLCGDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWIAVMSEAERVSELHLEVKASLMNEDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHTACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKDKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVASYKTIYRELEQSIKAADAVEDLRWFRANHGPGMAMNWPQFE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Endocytosis
molecule keywords Protein kinase C and casein kinase substrate in neurons prot
publication title A hinge in the distal end of the PACSIN 2 F-BAR domain may contribute to membrane-curvature sensing.
pubmed doi rcsb
source organism Mus musculus
total genus 105
structure length 287
sequence length 287
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3lllA01
3DYTA 2Z0OA 3HAHA 5C5BA 2X3VA 3Q0KA 2D1LA 1I4DA 2Z0VA 4ATMA 2RAKA 2RAIA 3LLLA 3OK8A 4NQIA 2EFLA 5C5BB 2C08A 3SYVA 1X04A 4DCNC 2FICA 4DYLA 4FZSA 3CAZA 3G9GA 4NSWA 4WPEA 2ELBA 3QE6A 3I2WA 3M3WA 4BNEA 1WDZA 2V0OA 1URUA 2Z0NA 2Q13A 1I4LA 2X3WA 3HAIA 3HAJA 2RAJA 3QWEA 2X3XA 3PLTA 3ACOA 4I1QA 1I49A 2D4CA 2Q12A 1Y2OA 1I4TA 3SOGA 3ABHA 4WPCA 1ZWWA 4AVMA 4AKVA 2YKTA 1X03A 2EFKA 4H8SA 3Q84A 3QNIA
chains in the Genus database with same CATH superfamily
3DYTA 3O3NB 4UDYX 1I4DA 2YIAA 1X04A 1O7DB 5E84A 1TQSA 3D2EA 2YIBA 3QA8A 2F7QA 1W9MA 4R5GA 3RPMA 4EZQA 2EFKA 1GNLA 2OW6A 4IWOA 2LM0A 3OWGA 4JWIA 3DX0A 2GA9D 4AZ7A 3T4AG 2JNSA 4IW0A 3ER9B 2YKTA 1X03A 1GNTA 3HAHA 2YI8A 3D2FA 4EZPA 4NQIA 4D8JA 3EJTA 3CZNA 2YL6A 2V0OA 2ND1A 3CKDA 5KBPA 1TQWA 3DPPA 1ZYLA 3T47A 3ACOA 4B9QA 4IM2A 4AKVA 3T48A 3DX4A 1R33A 4H6IA 2GAFD 2ALWA 3I2WA 4UDXX 3BVUA 1OA0A 1E1DA 2D4CA 3SOGA 1ZWWA 4AZ6A 4KIKA 3F7WA 3KDRA 3LLLA 1QWUA 3B51X 2X5CA 3DX1A 2Q13A 1R34A 2OO2A 4HYBA 3BVTA 1I49A 1JQKA 2EWFA 2F18A 2LXYA 3GI7A 4E81A 1QWNA 2Z0OA 3DDFA 4KIKB 1HTYA 3FD9A 1SU7A 4PO2A 5TKYA 4FZSA 3G9GA 4HY9A 4JLCA 2QFFA 3EJQA 3EJRA 4I1QA 1E2UA 4JNFA 4AZGA 3T49A 4EZOA 4WPCA 4EZSA 4FZPA 3LVTA 3QNIA 2F7PA 4ATMA 2RAIA 4IWPA 3QNJA 3OHXM 5FLEX 4AZBA 4EZNA 2WYHA 4BNEA 4EZTA 3CVRA 3HAIA 4FM3A 3LMFA 2YL5A 2PMRA 4JN4A 4EZZA 3Q84A 2Z8YA 2D1LA 2Z0VA 1OAOA 2EFLA 2C08A 3BVWA 3A98A 4JL9A 3VEBA 1WDZA 3EJSA 3RV1A 2PY6A 4EZWA 2YL8A 2F1BA 2Q12A 4H8SA 4EZYA 4NPHA 2F7RA 4JWCA 3SYVA 2EX3B 3CAZA 2ELBA 3BUIA 1HXKA 1R5EA 2F7OA 4FZOA 3HAJA 4JWDA 2OBMA 1U00A 3L3PA 3DX3A 4G6QA 3I01A 3ER8C 3Q0KA 3D4YA 3OK8A 3B52X 3L3OM 2Z0NA 4JWEA 3BVXA 1E9VA 2RAJA 3PLTA 4IM0A 3BVVA 1TQVA 3I04A 3DDGA 3EJUA 5C5BA 4HR1A 3D4ZA 2YIVX 3CV5A 4IWQA 2GF4A 4R5KA 3VEAA 3VKHA 4R5JA 3D50A 1I4TA 3D52A 2OZNB 2F1AA 3UITA 4F01A 1HWWA 4AZCA 2WINM 1SU8A 3ZEDA 1PS3A 5C5BB 4HR1B 4DYLA 4AZIA 4F00A 4AZ5A 1TQTA 1I4LA 2X3WA 4H6HA 3QWEA 4EZVA 3B53X 4R5LA 1MJGA 2ZXQA 2JNKA 4EZXA 2X3VA 2WYIA 2N3KA 4AZCB 1SUFA 2YLLA 3C7NA 2FICA 4WPEA 1TQUA 3I39X 3KAVA 3BLBA 2X3XA 4M0MA 2YLAA 3EJPA 2YI9A 3KAWA 3O3MB 3DPOA 1SU6A 2QXLA 2RAKA 1LQ7A 1QX1A 3BUQA 3QE6A 2QKWA 1UPXA 5FIGA 4EZUA 3DX2A 3BUPA 1GN9A 3BUDA 2YL9A 3ABHA 1OA1A 4AVMA 3RV0A 2OW7A 4R5IA 4DCNC 1YWMA 2KHOA 2RT6A 4NSWA 3M3WA 3CZSA 1URUA 2MI7A 3D51A 2FYVA 4JNEA 1DKXA 1DKZA 3ERCC 2O0I1 1O7DC 3BUBA 3O3OB 1DKYA 3DPQA 4E3CA 2NCZA 4EZRA 4IM3A 3T46A 2OBLA 1Y2OA 2ND0A 4AZHA
chains in the Genus database with same CATH topology
3DYTA 2Z0OA 3HAHA 5C5BA 2X3VA 3Q0KA 2D1LA 1I4DA 2Z0VA 4ATMA 2RAKA 2RAIA 3LLLA 3OK8A 4NQIA 2EFLA 5C5BB 2C08A 3SYVA 1X04A 4DCNC 2FICA 4DYLA 4FZSA 3CAZA 3G9GA 4NSWA 4WPEA 2ELBA 3QE6A 3I2WA 3M3WA 4BNEA 1WDZA 2V0OA 1URUA 2Z0NA 2Q13A 1I4LA 2X3WA 3HAIA 3HAJA 2RAJA 3QWEA 2X3XA 3PLTA 3ACOA 4I1QA 1I49A 2D4CA 2Q12A 1Y2OA 1I4TA 3SOGA 3ABHA 4WPCA 1ZWWA 4AVMA 4AKVA 2YKTA 1X03A 2EFKA 4H8SA 3Q84A 3QNIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DYT A;  2Z0O A;  3HAH A;  5C5B A;  2X3V A;  3Q0K A;  2D1L A;  1I4D A;  2Z0V A;  4ATM A;  2RAK A;  2RAI A;  3LLL A;  3OK8 A;  4NQI A;  2EFL A;  5C5B B;  2C08 A;  3SYV A;  1X04 A;  4DCN C;  2FIC A;  4DYL A;  4FZS A;  3CAZ A;  3G9G A;  4NSW A;  4WPE A;  2ELB A;  3QE6 A;  3I2W A;  3M3W A;  4BNE A;  1WDZ A;  2V0O A;  1URU A;  2Z0N A;  2Q13 A;  1I4L A;  2X3W A;  3HAI A;  3HAJ A;  2RAJ A;  3QWE A;  2X3X A;  3PLT A;  3ACO A;  4I1Q A;  1I49 A;  2D4C A;  2Q12 A;  1Y2O A;  1I4T A;  3SOG A;  3ABH A;  4WPC A;  1ZWW A;  4AVM A;  4AKV A;  2YKT A;  1X03 A;  2EFK A;  4H8S A;  3Q84 A;  3QNI A; 
#chains in the Genus database with same CATH topology
 3DYT A;  3O3N B;  4UDY X;  1I4D A;  2YIA A;  1X04 A;  1O7D B;  5E84 A;  1TQS A;  3D2E A;  2YIB A;  3QA8 A;  2F7Q A;  1W9M A;  4R5G A;  3RPM A;  4EZQ A;  2EFK A;  1GNL A;  2OW6 A;  4IWO A;  2LM0 A;  3OWG A;  4JWI A;  3DX0 A;  2GA9 D;  4AZ7 A;  3T4A G;  2JNS A;  4IW0 A;  3ER9 B;  2YKT A;  1X03 A;  1GNT A;  3HAH A;  2YI8 A;  3D2F A;  4EZP A;  4NQI A;  4D8J A;  3EJT A;  3CZN A;  2YL6 A;  2V0O A;  2ND1 A;  3CKD A;  5KBP A;  1TQW A;  3DPP A;  1ZYL A;  3T47 A;  3ACO A;  4B9Q A;  4IM2 A;  4AKV A;  3T48 A;  3DX4 A;  1R33 A;  4H6I A;  2GAF D;  2ALW A;  3I2W A;  4UDX X;  3BVU A;  1OA0 A;  1E1D A;  2D4C A;  3SOG A;  1ZWW A;  4AZ6 A;  4KIK A;  3F7W A;  3KDR A;  3LLL A;  1QWU A;  3B51 X;  2X5C A;  3DX1 A;  2Q13 A;  1R34 A;  2OO2 A;  4HYB A;  3BVT A;  1I49 A;  1JQK A;  2EWF A;  2F18 A;  2LXY A;  3GI7 A;  4E81 A;  1QWN A;  2Z0O A;  3DDF A;  4KIK B;  1HTY A;  3FD9 A;  1SU7 A;  4PO2 A;  5TKY A;  4FZS A;  3G9G A;  4HY9 A;  4JLC A;  2QFF A;  3EJQ A;  3EJR A;  4I1Q A;  1E2U A;  4JNF A;  4AZG A;  3T49 A;  4EZO A;  4WPC A;  4EZS A;  4FZP A;  3LVT A;  3QNI A;  2F7P A;  4ATM A;  2RAI A;  4IWP A;  3QNJ A;  3OHX M;  5FLE X;  4AZB A;  4EZN A;  2WYH A;  4BNE A;  4EZT A;  3CVR A;  3HAI A;  4FM3 A;  3LMF A;  2YL5 A;  2PMR A;  4JN4 A;  4EZZ A;  3Q84 A;  2Z8Y A;  2D1L A;  2Z0V A;  1OAO A;  2EFL A;  2C08 A;  3BVW A;  3A98 A;  4JL9 A;  3VEB A;  1WDZ A;  3EJS A;  3RV1 A;  2PY6 A;  4EZW A;  2YL8 A;  2F1B A;  2Q12 A;  4H8S A;  4EZY A;  4NPH A;  2F7R A;  4JWC A;  3SYV A;  2EX3 B;  3CAZ A;  2ELB A;  3BUI A;  1HXK A;  1R5E A;  2F7O A;  4FZO A;  3HAJ A;  4JWD A;  2OBM A;  1U00 A;  3L3P A;  3DX3 A;  4G6Q A;  3I01 A;  3ER8 C;  3Q0K A;  3D4Y A;  3OK8 A;  3B52 X;  3L3O M;  2Z0N A;  4JWE A;  3BVX A;  1E9V A;  2RAJ A;  3PLT A;  4IM0 A;  3BVV A;  1TQV A;  3I04 A;  3DDG A;  3EJU A;  5C5B A;  4HR1 A;  3D4Z A;  2YIV X;  3CV5 A;  4IWQ A;  2GF4 A;  4R5K A;  3VEA A;  3VKH A;  4R5J A;  3D50 A;  1I4T A;  3D52 A;  2OZN B;  2F1A A;  3UIT A;  4F01 A;  1HWW A;  4AZC A;  2WIN M;  1SU8 A;  3ZED A;  1PS3 A;  5C5B B;  4HR1 B;  4DYL A;  4AZI A;  4F00 A;  4AZ5 A;  1TQT A;  1I4L A;  2X3W A;  4H6H A;  3QWE A;  4EZV A;  3B53 X;  4R5L A;  1MJG A;  2ZXQ A;  2JNK A;  4EZX A;  2X3V A;  2WYI A;  2N3K A;  4AZC B;  1SUF A;  2YLL A;  3C7N A;  2FIC A;  4WPE A;  1TQU A;  3I39 X;  3KAV A;  3BLB A;  2X3X A;  4M0M A;  2YLA A;  3EJP A;  2YI9 A;  3KAW A;  3O3M B;  3DPO A;  1SU6 A;  2QXL A;  2RAK A;  1LQ7 A;  1QX1 A;  3BUQ A;  3QE6 A;  2QKW A;  1UPX A;  5FIG A;  4EZU A;  3DX2 A;  3BUP A;  1GN9 A;  3BUD A;  2YL9 A;  3ABH A;  1OA1 A;  4AVM A;  3RV0 A;  2OW7 A;  4R5I A;  4DCN C;  1YWM A;  2KHO A;  2RT6 A;  4NSW A;  3M3W A;  3CZS A;  1URU A;  2MI7 A;  3D51 A;  2FYV A;  4JNE A;  1DKX A;  1DKZ A;  3ERC C;  2O0I 1;  1O7D C;  3BUB A;  3O3O B;  1DKY A;  3DPQ A;  4E3C A;  2NCZ A;  4EZR A;  4IM3 A;  3T46 A;  2OBL A;  1Y2O A;  2ND0 A;  4AZH A; 
#chains in the Genus database with same CATH homology
 3DYT A;  2Z0O A;  3HAH A;  5C5B A;  2X3V A;  3Q0K A;  2D1L A;  1I4D A;  2Z0V A;  4ATM A;  2RAK A;  2RAI A;  3LLL A;  3OK8 A;  4NQI A;  2EFL A;  5C5B B;  2C08 A;  3SYV A;  1X04 A;  4DCN C;  2FIC A;  4DYL A;  4FZS A;  3CAZ A;  3G9G A;  4NSW A;  4WPE A;  2ELB A;  3QE6 A;  3I2W A;  3M3W A;  4BNE A;  1WDZ A;  2V0O A;  1URU A;  2Z0N A;  2Q13 A;  1I4L A;  2X3W A;  3HAI A;  3HAJ A;  2RAJ A;  3QWE A;  2X3X A;  3PLT A;  3ACO A;  4I1Q A;  1I49 A;  2D4C A;  2Q12 A;  1Y2O A;  1I4T A;  3SOG A;  3ABH A;  4WPC A;  1ZWW A;  4AVM A;  4AKV A;  2YKT A;  1X03 A;  2EFK A;  4H8S A;  3Q84 A;  3QNI A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...