3LLYA

Crystal structure analysis of maclura pomifera agglutinin
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
133
structure length
133
Chain Sequence
GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
publication title Characterization of the secondary binding sites of Maclura pomifera agglutinin by glycan array and crystallographic analyses.
pubmed doi rcsb
total genus 26
structure length 133
sequence length 133
ec nomenclature
pdb deposition date 2010-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3llyA00
1XXRA 1VBOA 3WOBA 1M26A 1UGYC 2GUEA 3LLYA 1XXQA 1C3NA 3VY7A 3R50A 1UH0A 2BMZA 2BN0A 1WS5C 1ZGRA 3VZEA 1UGWA 4PIKA 2BMYA 4WOGA 3MIVA 3P8SA 3LL2A 3O44A 3R52A 1J4SA 5BN6E 3LL0A 4GX7A 1KUJA 3LL1A 1UGWC 1OUWA 2GUXA 1WS4C 3WOCA 1C3MA 1TP8A 1ZGSA 1WS4A 4PIFA 3R51A 4R6PA 1VBPA 2HYRA 4PITA 1J4TA 1KU8A 4AKDA 2HYQA 5J51A 1UH1A 3VY6A 5J4TA 3LLZA 5EXGA 1X1VA 3LM1A 4R6OA 2NU5A 4R6RA 5JM1A 2NUOA 3VZGA 3APAA 1C3KA 2GTYA 4AK4A 1JACA 4R6QA 4DDNA 1PXDA 4AKBA 1UGYA 3MITA 3VZFA 1XEZA 2GUCA 5J4XA 2GUDA 3MIUA 1TOQA 3LKYA 1J4UA 4R6NA 4AKCA 3AQGA 1JOTA 2JZ4A 1UGXA 5J50A 1WS5A 4MQ0A 5AV7A 4PIUA
chains in the Genus database with same CATH superfamily
1XXRA 1VBOA 3WOBA 1M26A 1UGYC 2GUEA 3LLYA 4QX1A 1I5PA 1XXQA 1C3NA 3VY7A 3R50A 1UH0A 2BMZA 4QX3A 2BN0A 1VMOA 1WS5C 1ZGRA 3VZEA 1UGWA 4PIKA 2BMYA 4WOGA 3MIVA 3P8SA 3LL2A 3O44A 4ARYA 1CIYA 1W99A 3R52A 1J4SA 5BN6E 3LL0A 4GX7A 1KUJA 3LL1A 1UGWC 1OUWA 2GUXA 3TOWA 1WS4C 3WOCA 1C3MA 1TP8A 1ZGSA 1WS4A 4D8MA 4PIFA 3R51A 4R6PA 2QP2A 1VBPA 4MOAA 2HYRA 4PITA 4W8JA 1J4TA 1KU8A 4QX0A 4AKDA 2HYQA 5J51A 1UH1A 3VY6A 5J4TA 3LLZA 5EXGA 1X1VA 3LM1A 4R6OA 2NU5A 4R6RA 5JM1A 2NUOA 3VZGA 3APAA 1C3KA 2GTYA 4AK4A 1DLCA 1JACA 4R6QA 4DDNA 1PXDA 4AKBA 1UGYA 3MITA 3VZFA 1XEZA 1JI6A 2GUCA 5J4XA 4QX2A 3EB7A 2GUDA 3MIUA 1TOQA 3LKYA 1J4UA 4R6NA 4AKCA 3AQGA 1JOTA 2JZ4A 1UGXA 5J50A 1WS5A 4ARXA 4MQ0A 5AV7A 4PIUA 2C9KA
chains in the Genus database with same CATH topology
1XXRA 1VBOA 3WOBA 1M26A 1UGYC 2GUEA 3LLYA 1XXQA 1C3NA 3VY7A 3R50A 1UH0A 2BMZA 2BN0A 1WS5C 1ZGRA 3VZEA 1UGWA 4PIKA 2BMYA 4WOGA 3MIVA 3P8SA 3LL2A 3O44A 3R52A 1J4SA 5BN6E 3LL0A 4GX7A 1KUJA 3LL1A 1UGWC 1OUWA 2GUXA 1WS4C 3WOCA 1C3MA 1TP8A 1ZGSA 1WS4A 4PIFA 3R51A 4R6PA 1VBPA 2HYRA 4PITA 1J4TA 1KU8A 4AKDA 2HYQA 5J51A 1UH1A 3VY6A 5J4TA 3LLZA 5EXGA 1X1VA 3LM1A 4R6OA 2NU5A 4R6RA 5JM1A 2NUOA 3VZGA 3APAA 1C3KA 2GTYA 4AK4A 1JACA 4R6QA 4DDNA 1PXDA 4AKBA 1UGYA 3MITA 3VZFA 1XEZA 2GUCA 5J4XA 2GUDA 3MIUA 1TOQA 3LKYA 1J4UA 4R6NA 4AKCA 3AQGA 1JOTA 2JZ4A 1UGXA 5J50A 1WS5A 4MQ0A 5AV7A 4PIUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XXR A;  1VBO A;  3WOB A;  1M26 A;  1UGY C;  2GUE A;  3LLY A;  1XXQ A;  1C3N A;  3VY7 A;  3R50 A;  1UH0 A;  2BMZ A;  2BN0 A;  1WS5 C;  1ZGR A;  3VZE A;  1UGW A;  4PIK A;  2BMY A;  4WOG A;  3MIV A;  3P8S A;  3LL2 A;  3O44 A;  3R52 A;  1J4S A;  5BN6 E;  3LL0 A;  4GX7 A;  1KUJ A;  3LL1 A;  1UGW C;  1OUW A;  2GUX A;  1WS4 C;  3WOC A;  1C3M A;  1TP8 A;  1ZGS A;  1WS4 A;  4PIF A;  3R51 A;  4R6P A;  1VBP A;  2HYR A;  4PIT A;  1J4T A;  1KU8 A;  4AKD A;  2HYQ A;  5J51 A;  1UH1 A;  3VY6 A;  5J4T A;  3LLZ A;  5EXG A;  1X1V A;  3LM1 A;  4R6O A;  2NU5 A;  4R6R A;  5JM1 A;  2NUO A;  3VZG A;  3APA A;  1C3K A;  2GTY A;  4AK4 A;  1JAC A;  4R6Q A;  4DDN A;  1PXD A;  4AKB A;  1UGY A;  3MIT A;  3VZF A;  1XEZ A;  2GUC A;  5J4X A;  2GUD A;  3MIU A;  1TOQ A;  3LKY A;  1J4U A;  4R6N A;  4AKC A;  3AQG A;  1JOT A;  2JZ4 A;  1UGX A;  5J50 A;  1WS5 A;  4MQ0 A;  5AV7 A;  4PIU A; 
#chains in the Genus database with same CATH topology
 1XXR A;  1VBO A;  3WOB A;  1M26 A;  1UGY C;  2GUE A;  3LLY A;  4QX1 A;  1I5P A;  1XXQ A;  1C3N A;  3VY7 A;  3R50 A;  1UH0 A;  2BMZ A;  4QX3 A;  2BN0 A;  1VMO A;  1WS5 C;  1ZGR A;  3VZE A;  1UGW A;  4PIK A;  2BMY A;  4WOG A;  3MIV A;  3P8S A;  3LL2 A;  3O44 A;  4ARY A;  1CIY A;  1W99 A;  3R52 A;  1J4S A;  5BN6 E;  3LL0 A;  4GX7 A;  1KUJ A;  3LL1 A;  1UGW C;  1OUW A;  2GUX A;  3TOW A;  1WS4 C;  3WOC A;  1C3M A;  1TP8 A;  1ZGS A;  1WS4 A;  4D8M A;  4PIF A;  3R51 A;  4R6P A;  2QP2 A;  1VBP A;  4MOA A;  2HYR A;  4PIT A;  4W8J A;  1J4T A;  1KU8 A;  4QX0 A;  4AKD A;  2HYQ A;  5J51 A;  1UH1 A;  3VY6 A;  5J4T A;  3LLZ A;  5EXG A;  1X1V A;  3LM1 A;  4R6O A;  2NU5 A;  4R6R A;  5JM1 A;  2NUO A;  3VZG A;  3APA A;  1C3K A;  2GTY A;  4AK4 A;  1DLC A;  1JAC A;  4R6Q A;  4DDN A;  1PXD A;  4AKB A;  1UGY A;  3MIT A;  3VZF A;  1XEZ A;  1JI6 A;  2GUC A;  5J4X A;  4QX2 A;  3EB7 A;  2GUD A;  3MIU A;  1TOQ A;  3LKY A;  1J4U A;  4R6N A;  4AKC A;  3AQG A;  1JOT A;  2JZ4 A;  1UGX A;  5J50 A;  1WS5 A;  4ARX A;  4MQ0 A;  5AV7 A;  4PIU A;  2C9K A; 
#chains in the Genus database with same CATH homology
 1XXR A;  1VBO A;  3WOB A;  1M26 A;  1UGY C;  2GUE A;  3LLY A;  1XXQ A;  1C3N A;  3VY7 A;  3R50 A;  1UH0 A;  2BMZ A;  2BN0 A;  1WS5 C;  1ZGR A;  3VZE A;  1UGW A;  4PIK A;  2BMY A;  4WOG A;  3MIV A;  3P8S A;  3LL2 A;  3O44 A;  3R52 A;  1J4S A;  5BN6 E;  3LL0 A;  4GX7 A;  1KUJ A;  3LL1 A;  1UGW C;  1OUW A;  2GUX A;  1WS4 C;  3WOC A;  1C3M A;  1TP8 A;  1ZGS A;  1WS4 A;  4PIF A;  3R51 A;  4R6P A;  1VBP A;  2HYR A;  4PIT A;  1J4T A;  1KU8 A;  4AKD A;  2HYQ A;  5J51 A;  1UH1 A;  3VY6 A;  5J4T A;  3LLZ A;  5EXG A;  1X1V A;  3LM1 A;  4R6O A;  2NU5 A;  4R6R A;  5JM1 A;  2NUO A;  3VZG A;  3APA A;  1C3K A;  2GTY A;  4AK4 A;  1JAC A;  4R6Q A;  4DDN A;  1PXD A;  4AKB A;  1UGY A;  3MIT A;  3VZF A;  1XEZ A;  2GUC A;  5J4X A;  2GUD A;  3MIU A;  1TOQ A;  3LKY A;  1J4U A;  4R6N A;  4AKC A;  3AQG A;  1JOT A;  2JZ4 A;  1UGX A;  5J50 A;  1WS5 A;  4MQ0 A;  5AV7 A;  4PIU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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