3LMFA

Crystal structure of nmul_a1745 protein from nitrosospira multiformis, northeast structural genomics consortium target nmr72
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
109
structure length
109
Chain Sequence
TDQNLQACIDACNHCYRTCLRMAMNHCLEAGGKHVEADHLRLMMNCAEICQTSLNFMLSGSRFSPKVCGVCAEICDACAKSCEQLDGMEECVQTCRQCAEHCRKMAALE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Uncharacterized protein
publication title Northeast Structural Genomics Consortium Target NmR72
rcsb
source organism Nitrosospira multiformis
total genus 37
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2010-01-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.360 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3lmfA00
5FIGA 3KAVA 3KAWA 3LMFA
chains in the Genus database with same CATH superfamily
2RAIA 1GNTA 1DKYA 2OW7A 3D4YA 1LQ7A 3F7WA 2MI7A 2ELBA 4WPCA 3M3WA 2Q13A 3BVUA 3ACOA 2C08A 1TQTA 4AZCB 2X3XA 2OO2A 2YI9A 4R5IA 3OWGA 3CV5A 3T46A 1O7DC 1URUA 2X3VA 3BVXA 4IM2A 3CZSA 4EZOA 3O3MB 2EFLA 1OA1A 4H6HA 4G6QA 1OAOA 2GAFD 5FIGA 2LM0A 4EZRA 4H6IA 4AKVA 3FD9A 3I01A 4IW0A 4E81A 1JQKA 3BUBA 3VEBA 4HYBA 3G9GA 3PLTA 3CKDA 4JL9A 4AVMA 3UITA 1E1DA 4JNFA 1R34A 2F7RA 4E3CA 3I39X 3VEAA 1SU8A 2F7QA 2YIBA 2WYIA 3DPQA 3QNIA 3EJTA 2V0OA 3O3OB 2F7PA 3BLBA 3ER8C 4KIKA 3CZNA 3BUIA 3BVVA 2NCZA 2JNKA 4AZ6A 4IWPA 3Q84A 3ER9B 2OBMA 2F7OA 2PMRA 2QFFA 3RPMA 1GN9A 2OW6A 3QA8A 3D51A 2JNSA 1X03A 3D52A 4F01A 3KAVA 2F1AA 1E2UA 1TQVA 1UPXA 1I4DA 4R5JA 3ZEDA 3QWEA 5TKYA 4EZNA 4R5KA 2RAKA 2OBLA 3HAHA 2Z0NA 3T49A 3A98A 4IM3A 1I4LA 3VKHA 3OHXM 3DPOA 1MJGA 2KHOA 3BVWA 5E84A 4JWEA 3EJPA 2GA9D 4UDYX 2Z0VA 3ABHA 4R5GA 2GF4A 3DDGA 2YL9A 4NPHA 4M0MA 2ALWA 2YL6A 4B9QA 3BVTA 4BNEA 1TQWA 1I49A 4HR1A 2EFKA 3D50A 3DX3A 1X04A 4AZBA 2YL8A 3B52X 3RV0A 2YIVX 1ZWWA 1U00A 2N3KA 3EJRA 4EZPA 3OK8A 3CAZA 2RAJA 2RT6A 1WDZA 2ND0A 1DKXA 1SU7A 3EJUA 4FM3A 4IWOA 1E9VA 4PO2A 3C7NA 2PY6A 1PS3A 3HAJA 4JWCA 1YWMA 1W9MA 1SU6A 1HXKA 4JWDA 4AZ7A 2O0I1 2Z8YA 4R5LA 4D8JA 2ND1A 2WINM 2QXLA 2FICA 3DDFA 3DYTA 4F00A 4DYLA 5KBPA 4FZPA 4JNEA 3I2WA 4EZVA 4AZ5A 4FZSA 4EZUA 2YKTA 2F1BA 3L3OM 3LMFA 3HAIA 1QWNA 2YL5A 4UDXX 3D2FA 2YLLA 2D1LA 2ZXQA 1OA0A 4EZSA 3KAWA 3QNJA 3T48A 5FLEX 1HWWA 4JN4A 4KIKB 3DPPA 4DCNC 3LLLA 3ERCC 3Q0KA 5C5BA 1SUFA 2LXYA 4IWQA 2YLAA 1QX1A 3CVRA 1GNLA 1O7DB 2EX3B 1Y2OA 4AZIA 2EWFA 3DX1A 4HY9A 4AZGA 4JWIA 2F18A 1R5EA 2D4CA 4EZQA 2WYHA 4JLCA 3L3PA 3B53X 3I04A 3RV1A 1HTYA 2X3WA 3GI7A 4EZTA 4I1QA 4AZCA 4WPEA 2OZNB 1I4TA 3BUQA 4AZHA 3DX2A 1DKZA 2YIAA 3KDRA 4NQIA 3D4ZA 4EZXA 3B51X 4NSWA 1ZYLA 4EZYA 2YI8A 4FZOA 1TQUA 1QWUA 2X5CA 2Q12A 4EZZA 2QKWA 4IM0A 4ATMA 2FYVA 1R33A 1TQSA 3T47A 4H8SA 3O3NB 2Z0OA 3QE6A 5C5BB 4EZWA 3DX0A 3SYVA 3DX4A 3SOGA 3BUPA 3EJSA 3D2EA 3EJQA 3T4AG 3BUDA 3LVTA 4HR1B
chains in the Genus database with same CATH topology
3ERCC 1GNTA 1DKYA 4IWPA 3B52X 3RV0A 3ER9B 3F7WA 1SUFA 2YIVX 1U00A 2N3KA 2OBMA 4EZPA 2QFFA 4IWQA 2RT6A 1GNLA 2EX3B 1GN9A 2ND0A 3QA8A 2JNSA 1DKXA 1SU7A 2YI9A 2EWFA 4FM3A 4HY9A 4IWOA 4R5IA 4JWIA 1E9VA 4F01A 3KAVA 4PO2A 3C7NA 1E2UA 4EZQA 3OWGA 2PY6A 1UPXA 4JLCA 4R5JA 4JWCA 3T46A 3B53X 3ZEDA 1W9MA 3I04A 5TKYA 3RV1A 1SU6A 4EZNA 4IM2A 4JWDA 3GI7A 4EZTA 4EZOA 4R5KA 2Z8YA 4R5LA 2OBLA 1DKZA 4D8JA 3O3MB 3T49A 2ND1A 3A98A 2WINM 2YIAA 3KDRA 4EZXA 1OA1A 4IM3A 2QXLA 4H6HA 3VKHA 3OHXM 3B51X 4G6QA 1ZYLA 1OAOA 4EZYA 3DPOA 2YI8A 4F00A 1MJGA 4JNEA 2KHOA 2GAFD 5FIGA 2LM0A 4EZRA 4H6IA 2X5CA 5E84A 3FD9A 3I01A 4IW0A 4EZVA 4EZZA 4E81A 1JQKA 4JWEA 2GA9D 4IM0A 3VEBA 4HYBA 4EZUA 4UDYX 4JL9A 3UITA 3L3OM 3LMFA 1E1DA 3T47A 4JNFA 4E3CA 4UDXX 4R5GA 3D2FA 3I39X 3VEAA 3O3NB 4NPHA 1SU8A 2YIBA 3DPQA 1OA0A 4M0MA 4EZWA 4EZSA 3KAWA 3QNJA 3T48A 3O3OB 3ER8C 4KIKA 4B9QA 5FLEX 3D2EA 4JN4A 4HR1A 4KIKB 3T4AG 2NCZA 3DPPA 4HR1B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FIG A;  3KAV A;  3KAW A;  3LMF A; 
#chains in the Genus database with same CATH topology
 2RAI A;  1GNT A;  1DKY A;  2OW7 A;  3D4Y A;  1LQ7 A;  3F7W A;  2MI7 A;  2ELB A;  4WPC A;  3M3W A;  2Q13 A;  3BVU A;  3ACO A;  2C08 A;  1TQT A;  4AZC B;  2X3X A;  2OO2 A;  2YI9 A;  4R5I A;  3OWG A;  3CV5 A;  3T46 A;  1O7D C;  1URU A;  2X3V A;  3BVX A;  4IM2 A;  3CZS A;  4EZO A;  3O3M B;  2EFL A;  1OA1 A;  4H6H A;  4G6Q A;  1OAO A;  2GAF D;  5FIG A;  2LM0 A;  4EZR A;  4H6I A;  4AKV A;  3FD9 A;  3I01 A;  4IW0 A;  4E81 A;  1JQK A;  3BUB A;  3VEB A;  4HYB A;  3G9G A;  3PLT A;  3CKD A;  4JL9 A;  4AVM A;  3UIT A;  1E1D A;  4JNF A;  1R34 A;  2F7R A;  4E3C A;  3I39 X;  3VEA A;  1SU8 A;  2F7Q A;  2YIB A;  2WYI A;  3DPQ A;  3QNI A;  3EJT A;  2V0O A;  3O3O B;  2F7P A;  3BLB A;  3ER8 C;  4KIK A;  3CZN A;  3BUI A;  3BVV A;  2NCZ A;  2JNK A;  4AZ6 A;  4IWP A;  3Q84 A;  3ER9 B;  2OBM A;  2F7O A;  2PMR A;  2QFF A;  3RPM A;  1GN9 A;  2OW6 A;  3QA8 A;  3D51 A;  2JNS A;  1X03 A;  3D52 A;  4F01 A;  3KAV A;  2F1A A;  1E2U A;  1TQV A;  1UPX A;  1I4D A;  4R5J A;  3ZED A;  3QWE A;  5TKY A;  4EZN A;  4R5K A;  2RAK A;  2OBL A;  3HAH A;  2Z0N A;  3T49 A;  3A98 A;  4IM3 A;  1I4L A;  3VKH A;  3OHX M;  3DPO A;  1MJG A;  2KHO A;  3BVW A;  5E84 A;  4JWE A;  3EJP A;  2GA9 D;  4UDY X;  2Z0V A;  3ABH A;  4R5G A;  2GF4 A;  3DDG A;  2YL9 A;  4NPH A;  4M0M A;  2ALW A;  2YL6 A;  4B9Q A;  3BVT A;  4BNE A;  1TQW A;  1I49 A;  4HR1 A;  2EFK A;  3D50 A;  3DX3 A;  1X04 A;  4AZB A;  2YL8 A;  3B52 X;  3RV0 A;  2YIV X;  1ZWW A;  1U00 A;  2N3K A;  3EJR A;  4EZP A;  3OK8 A;  3CAZ A;  2RAJ A;  2RT6 A;  1WDZ A;  2ND0 A;  1DKX A;  1SU7 A;  3EJU A;  4FM3 A;  4IWO A;  1E9V A;  4PO2 A;  3C7N A;  2PY6 A;  1PS3 A;  3HAJ A;  4JWC A;  1YWM A;  1W9M A;  1SU6 A;  1HXK A;  4JWD A;  4AZ7 A;  2O0I 1;  2Z8Y A;  4R5L A;  4D8J A;  2ND1 A;  2WIN M;  2QXL A;  2FIC A;  3DDF A;  3DYT A;  4F00 A;  4DYL A;  5KBP A;  4FZP A;  4JNE A;  3I2W A;  4EZV A;  4AZ5 A;  4FZS A;  4EZU A;  2YKT A;  2F1B A;  3L3O M;  3LMF A;  3HAI A;  1QWN A;  2YL5 A;  4UDX X;  3D2F A;  2YLL A;  2D1L A;  2ZXQ A;  1OA0 A;  4EZS A;  3KAW A;  3QNJ A;  3T48 A;  5FLE X;  1HWW A;  4JN4 A;  4KIK B;  3DPP A;  4DCN C;  3LLL A;  3ERC C;  3Q0K A;  5C5B A;  1SUF A;  2LXY A;  4IWQ A;  2YLA A;  1QX1 A;  3CVR A;  1GNL A;  1O7D B;  2EX3 B;  1Y2O A;  4AZI A;  2EWF A;  3DX1 A;  4HY9 A;  4AZG A;  4JWI A;  2F18 A;  1R5E A;  2D4C A;  4EZQ A;  2WYH A;  4JLC A;  3L3P A;  3B53 X;  3I04 A;  3RV1 A;  1HTY A;  2X3W A;  3GI7 A;  4EZT A;  4I1Q A;  4AZC A;  4WPE A;  2OZN B;  1I4T A;  3BUQ A;  4AZH A;  3DX2 A;  1DKZ A;  2YIA A;  3KDR A;  4NQI A;  3D4Z A;  4EZX A;  3B51 X;  4NSW A;  1ZYL A;  4EZY A;  2YI8 A;  4FZO A;  1TQU A;  1QWU A;  2X5C A;  2Q12 A;  4EZZ A;  2QKW A;  4IM0 A;  4ATM A;  2FYV A;  1R33 A;  1TQS A;  3T47 A;  4H8S A;  3O3N B;  2Z0O A;  3QE6 A;  5C5B B;  4EZW A;  3DX0 A;  3SYV A;  3DX4 A;  3SOG A;  3BUP A;  3EJS A;  3D2E A;  3EJQ A;  3T4A G;  3BUD A;  3LVT A;  4HR1 B; 
#chains in the Genus database with same CATH homology
 3ERC C;  1GNT A;  1DKY A;  4IWP A;  3B52 X;  3RV0 A;  3ER9 B;  3F7W A;  1SUF A;  2YIV X;  1U00 A;  2N3K A;  2OBM A;  4EZP A;  2QFF A;  4IWQ A;  2RT6 A;  1GNL A;  2EX3 B;  1GN9 A;  2ND0 A;  3QA8 A;  2JNS A;  1DKX A;  1SU7 A;  2YI9 A;  2EWF A;  4FM3 A;  4HY9 A;  4IWO A;  4R5I A;  4JWI A;  1E9V A;  4F01 A;  3KAV A;  4PO2 A;  3C7N A;  1E2U A;  4EZQ A;  3OWG A;  2PY6 A;  1UPX A;  4JLC A;  4R5J A;  4JWC A;  3T46 A;  3B53 X;  3ZED A;  1W9M A;  3I04 A;  5TKY A;  3RV1 A;  1SU6 A;  4EZN A;  4IM2 A;  4JWD A;  3GI7 A;  4EZT A;  4EZO A;  4R5K A;  2Z8Y A;  4R5L A;  2OBL A;  1DKZ A;  4D8J A;  3O3M B;  3T49 A;  2ND1 A;  3A98 A;  2WIN M;  2YIA A;  3KDR A;  4EZX A;  1OA1 A;  4IM3 A;  2QXL A;  4H6H A;  3VKH A;  3OHX M;  3B51 X;  4G6Q A;  1ZYL A;  1OAO A;  4EZY A;  3DPO A;  2YI8 A;  4F00 A;  1MJG A;  4JNE A;  2KHO A;  2GAF D;  5FIG A;  2LM0 A;  4EZR A;  4H6I A;  2X5C A;  5E84 A;  3FD9 A;  3I01 A;  4IW0 A;  4EZV A;  4EZZ A;  4E81 A;  1JQK A;  4JWE A;  2GA9 D;  4IM0 A;  3VEB A;  4HYB A;  4EZU A;  4UDY X;  4JL9 A;  3UIT A;  3L3O M;  3LMF A;  1E1D A;  3T47 A;  4JNF A;  4E3C A;  4UDX X;  4R5G A;  3D2F A;  3I39 X;  3VEA A;  3O3N B;  4NPH A;  1SU8 A;  2YIB A;  3DPQ A;  1OA0 A;  4M0M A;  4EZW A;  4EZS A;  3KAW A;  3QNJ A;  3T48 A;  3O3O B;  3ER8 C;  4KIK A;  4B9Q A;  5FLE X;  3D2E A;  4JN4 A;  4HR1 A;  4KIK B;  3T4A G;  2NCZ A;  3DPP A;  4HR1 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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