3LMVA

D-tyr-trna(tyr) deacylase from plasmodium falciparum in complex with hepes
Total Genus 39
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
161
structure length
152
Chain Sequence
MRVVIQRVKGAILSVRKLEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHDIN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords D-tyrosyl-tRNA(Tyr) deacylase
publication title Structure of D-tyrosyl-tRNATyr deacylase using home-source Cu Kalpha and moderate-quality iodide-SAD data: structural polymorphism and HEPES-bound enzyme states
pubmed doi rcsb
source organism Plasmodium falciparum
total genus 39
structure length 152
sequence length 161
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.1.1.96: D-aminoacyl-tRNA deacylase.
pdb deposition date 2010-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02580 Tyr_Deacylase D-Tyr-tRNA(Tyr) deacylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.80.10 Alpha Beta 3-Layer(bba) Sandwich D-tyrosyl-trna(Tyr) Deacylase; Chain: A; D-tyrosyl-trna(Tyr) Deacylase; Chain: A; 3lmvA00
4RRGA 1Y2QA 4RRAA 5J61A 4RRIA 4RRJA 4RRQA 4RRBA 4S0LA 2HL1A 4RRRA 2DBOA 3KO7A 4RRMA 3KO5A 3KOCA 4RRDA 3PD4A 3PD2A 2HL2A 3KO9A 4RR6A 3KOBA 4S02A 4RRFA 4NBIA 3KO3A 3LMVA 4RR8A 3KNFA 2HL0A 2OKVA 3PD3A 4RR7A 4RRKA 4S03A 2HKZA 3LMUA 3KNPA 1TC5A 3LMTA 1J7GA 4RRHA 4S0IA 4S0JA 3KODA 4RRCA 1JKEA 4RRLA 3KO4A 4NBJA 3PD5A 4S0KA 4RR9A
chains in the Genus database with same CATH superfamily
3ZCZA 2EXAA 1Y2QA 4RRIA 4B4XA 4RRQA 2HL1A 3KO5A 3KOCA 3KO9A 5CERA 3KOBA 4NBIA 3A3IA 4RRHA 2Y4AA 2Y59A 4RRCA 4RRLA 2EXBA 4S0KA 4S0JA 2Y55A 1W5DA 5CEBA 4RRBA 4BENA 4S0LA 4B4ZA 4RRMA 5CEDA 3A3DA 2HL0A 2OKVA 3PD3A 4S03A 2XK1A 4S0IA 2J9PA 5CECA 1JKEA 3KO4A 4NBJA 1W79A 2VGJA 4RR9A 4RRGA 1W8YA 4RRAA 2EX8A 2VGKA 4RRRA 3KO7A 2XLNA 3V39A 4S02A 4RRFA 3KNFA 4RRKA 3ZVWA 3LMUA 3ZVTA 3KNPA 2XDMA 2EX2A 2WKEA 3PD5A 2EX9A 5J61A 4RRJA 2DBOA 4RRDA 3PD4A 3PD2A 2HL2A 4RR6A 3KO3A 3LMVA 4RR8A 2EX6A 4RR7A 2HKZA 3A3EA 1TC5A 3A3FA 1J7GA 3LMTA 3KODA 1W8QA
chains in the Genus database with same CATH topology
3ZCZA 2EXAA 1Y2QA 4RRIA 4B4XA 4RRQA 2HL1A 3KO5A 3KOCA 3KO9A 5CERA 3KOBA 4NBIA 3A3IA 4RRHA 2Y4AA 2Y59A 4RRCA 4RRLA 2EXBA 4S0KA 4S0JA 2Y55A 1W5DA 5CEBA 4RRBA 4BENA 4S0LA 4B4ZA 4RRMA 5CEDA 3A3DA 2HL0A 2OKVA 3PD3A 4S03A 2XK1A 4S0IA 2J9PA 5CECA 1JKEA 3KO4A 4NBJA 1W79A 2VGJA 4RR9A 4RRGA 1W8YA 4RRAA 2EX8A 2VGKA 4RRRA 3KO7A 2XLNA 3V39A 4S02A 4RRFA 3KNFA 4RRKA 3ZVWA 3LMUA 3ZVTA 3KNPA 2XDMA 2EX2A 2WKEA 3PD5A 2EX9A 5J61A 4RRJA 2DBOA 4RRDA 3PD4A 3PD2A 2HL2A 4RR6A 3KO3A 3LMVA 4RR8A 2EX6A 4RR7A 2HKZA 3A3EA 1TC5A 3A3FA 1J7GA 3LMTA 3KODA 1W8QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RRG A;  1Y2Q A;  4RRA A;  5J61 A;  4RRI A;  4RRJ A;  4RRQ A;  4RRB A;  4S0L A;  2HL1 A;  4RRR A;  2DBO A;  3KO7 A;  4RRM A;  3KO5 A;  3KOC A;  4RRD A;  3PD4 A;  3PD2 A;  2HL2 A;  3KO9 A;  4RR6 A;  3KOB A;  4S02 A;  4RRF A;  4NBI A;  3KO3 A;  3LMV A;  4RR8 A;  3KNF A;  2HL0 A;  2OKV A;  3PD3 A;  4RR7 A;  4RRK A;  4S03 A;  2HKZ A;  3LMU A;  3KNP A;  1TC5 A;  3LMT A;  1J7G A;  4RRH A;  4S0I A;  4S0J A;  3KOD A;  4RRC A;  1JKE A;  4RRL A;  3KO4 A;  4NBJ A;  3PD5 A;  4S0K A;  4RR9 A; 
#chains in the Genus database with same CATH topology
 3ZCZ A;  2EXA A;  1Y2Q A;  4RRI A;  4B4X A;  4RRQ A;  2HL1 A;  3KO5 A;  3KOC A;  3KO9 A;  5CER A;  3KOB A;  4NBI A;  3A3I A;  4RRH A;  2Y4A A;  2Y59 A;  4RRC A;  4RRL A;  2EXB A;  4S0K A;  4S0J A;  2Y55 A;  1W5D A;  5CEB A;  4RRB A;  4BEN A;  4S0L A;  4B4Z A;  4RRM A;  5CED A;  3A3D A;  2HL0 A;  2OKV A;  3PD3 A;  4S03 A;  2XK1 A;  4S0I A;  2J9P A;  5CEC A;  1JKE A;  3KO4 A;  4NBJ A;  1W79 A;  2VGJ A;  4RR9 A;  4RRG A;  1W8Y A;  4RRA A;  2EX8 A;  2VGK A;  4RRR A;  3KO7 A;  2XLN A;  3V39 A;  4S02 A;  4RRF A;  3KNF A;  4RRK A;  3ZVW A;  3LMU A;  3ZVT A;  3KNP A;  2XDM A;  2EX2 A;  2WKE A;  3PD5 A;  2EX9 A;  5J61 A;  4RRJ A;  2DBO A;  4RRD A;  3PD4 A;  3PD2 A;  2HL2 A;  4RR6 A;  3KO3 A;  3LMV A;  4RR8 A;  2EX6 A;  4RR7 A;  2HKZ A;  3A3E A;  1TC5 A;  3A3F A;  1J7G A;  3LMT A;  3KOD A;  1W8Q A; 
#chains in the Genus database with same CATH homology
 3ZCZ A;  2EXA A;  1Y2Q A;  4RRI A;  4B4X A;  4RRQ A;  2HL1 A;  3KO5 A;  3KOC A;  3KO9 A;  5CER A;  3KOB A;  4NBI A;  3A3I A;  4RRH A;  2Y4A A;  2Y59 A;  4RRC A;  4RRL A;  2EXB A;  4S0K A;  4S0J A;  2Y55 A;  1W5D A;  5CEB A;  4RRB A;  4BEN A;  4S0L A;  4B4Z A;  4RRM A;  5CED A;  3A3D A;  2HL0 A;  2OKV A;  3PD3 A;  4S03 A;  2XK1 A;  4S0I A;  2J9P A;  5CEC A;  1JKE A;  3KO4 A;  4NBJ A;  1W79 A;  2VGJ A;  4RR9 A;  4RRG A;  1W8Y A;  4RRA A;  2EX8 A;  2VGK A;  4RRR A;  3KO7 A;  2XLN A;  3V39 A;  4S02 A;  4RRF A;  3KNF A;  4RRK A;  3ZVW A;  3LMU A;  3ZVT A;  3KNP A;  2XDM A;  2EX2 A;  2WKE A;  3PD5 A;  2EX9 A;  5J61 A;  4RRJ A;  2DBO A;  4RRD A;  3PD4 A;  3PD2 A;  2HL2 A;  4RR6 A;  3KO3 A;  3LMV A;  4RR8 A;  2EX6 A;  4RR7 A;  2HKZ A;  3A3E A;  1TC5 A;  3A3F A;  1J7G A;  3LMT A;  3KOD A;  1W8Q A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...