3LMXM

Tyrosine 447 of protocatechuate 34,-dioxygenase controls efficient progress through catalysis
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
238
structure length
238
Chain Sequence
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTGPNFSHLGFGAHDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIKPGPHPWRNGPNDWRPAHIHFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEAVQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFENC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Protocatechuate 3,4-dioxygenase alpha chain
publication title Tyrosine 447 of Protocatechuate 34,-Dioxygenase Controls Efficient Progress Through Catalysis
rcsb
source organism Pseudomonas putida
total genus 54
structure length 238
sequence length 238
chains with identical sequence N, O
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2010-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00775 Dioxygenase_C Dioxygenase
M PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3lmxM00
3PCNM 3O6RA 3O5UA 1EOCA 1EOBB 1EOCB 2BUZA 3LXVM 2BUZB 3HHXA 3PCDA 1DLQA 3PCEA 1DLMA 3PCBA 3HJ8A 3PCIM 2BUQA 2BV0A 3I4YA 2BUQB 4WHPA 3MI5A 4WHPB 3T67M 1EO2A 3PCLM 1YKPB 3TH1A 3N9TA 3HJSA 3I4VA 3O6JA 3MV6M 3PCMM 4WHQA 1YKNB 3HJQA 3O32A 2BUYA 3PCKA 3PCHA 3MFLM 4WHSD 2XSRA 2BUMA 2BUMB 1EO9A 3PCMA 4WHRF 3PCCM 2BUTA 3PCNA 2BV0B 3MV4M 3MFLA 1EO2B 2XSUA 3PCFM 3LXVA 3LMXM 3HHYA 1DMHA 2BUUA 1DLTA 2BUUB 3PCGM 3LKTM 3PCIA 4WHQB 3MI1M 3T67A 3MV4A 3PCLA 2BUYB 4WHOD 4ILVA 2XSVA 1YKMA 3MV6A 3PCAM 1YKMB 4WHOA 1EO9B 4WHSA 4WHSB 3T63M 3I51A 2PCDM 4WHRA 2BUXA 4WHRB 2BUXB 2BUTB 2BURA 2BURB 2BUVA 2BUVB 4ILTA 1YKOA 2AZQA 3PCDM 3PCCA 3PCEM 2PCDA 3PCBM 1YKLA 1YKLB 3MI5M 2BUWA 2BUWB 1EOBA 3PCFA 3PCJM 3LMXA 1YKKA 1YKKB 1EOAA 3PCGA 4WHPD 1EOAB 3LKTA 4WHOB 2BOYA 3HKPA 3MI1A 5TD3A 1YKPA 3PCJA 3PCKM 3PCHM 1S9AA 3PCAA 1YKOB 1TMXA 3HGIA 1YKNA 3T63A
chains in the Genus database with same CATH superfamily
3PCNM 3O6RA 3O5UA 1EOCA 1EOBB 1EOCB 2BUZA 3LXVM 2BUZB 3HHXA 3PCDA 1DLQA 3PCEA 1DLMA 3PCBA 3HJ8A 3PCIM 2BUQA 2BV0A 3I4YA 2BUQB 4WHPA 3MI5A 4WHPB 3T67M 1EO2A 3PCLM 1YKPB 3TH1A 3N9TA 3HJSA 3I4VA 3O6JA 3MV6M 3PCMM 4WHQA 1YKNB 3HJQA 3O32A 2BUYA 3PCKA 3PCHA 3MFLM 4WHSD 2XSRA 2BUMA 2BUMB 1EO9A 3PCMA 4WHRF 3PCCM 2BUTA 3PCNA 2BV0B 3MV4M 3MFLA 1EO2B 2XSUA 3PCFM 3LXVA 3LMXM 3HHYA 1DMHA 2BUUA 1DLTA 2BUUB 3PCGM 3LKTM 3PCIA 4WHQB 3MI1M 3T67A 3MV4A 3PCLA 2BUYB 4WHOD 4ILVA 2XSVA 1YKMA 3MV6A 3PCAM 1YKMB 4WHOA 1EO9B 4WHSA 4WHSB 3T63M 3I51A 2PCDM 4WHRA 2BUXA 4WHRB 2BUXB 2BUTB 2BURA 2BURB 2BUVA 2BUVB 4ILTA 1YKOA 2AZQA 3PCDM 3PCCA 3PCEM 2PCDA 3PCBM 1YKLA 1YKLB 3MI5M 2BUWA 2BUWB 1EOBA 3PCFA 3PCJM 3LMXA 1YKKA 1YKKB 1EOAA 3PCGA 4WHPD 1EOAB 3LKTA 4WHOB 2BOYA 3HKPA 3MI1A 5TD3A 1YKPA 3PCJA 3PCKM 3PCHM 1S9AA 3PCAA 1YKOB 1TMXA 3HGIA 1YKNA 3T63A
chains in the Genus database with same CATH topology
3PCNM 3O6RA 3O5UA 1EOCA 1EOBB 1EOCB 2BUZA 3LXVM 2BUZB 3HHXA 3PCDA 1DLQA 3PCEA 1DLMA 3PCBA 3HJ8A 3PCIM 2BUQA 2BV0A 3I4YA 2BUQB 4WHPA 3MI5A 4WHPB 3T67M 1EO2A 3PCLM 1YKPB 3TH1A 3N9TA 3HJSA 3I4VA 3O6JA 3MV6M 3PCMM 4WHQA 1YKNB 3HJQA 3O32A 2BUYA 3PCKA 3PCHA 3MFLM 4WHSD 2XSRA 2BUMA 2BUMB 1EO9A 3PCMA 4WHRF 3PCCM 2BUTA 3PCNA 2BV0B 3MV4M 3MFLA 1EO2B 2XSUA 3PCFM 3LXVA 3LMXM 3HHYA 1DMHA 2BUUA 1DLTA 2BUUB 3PCGM 3LKTM 3PCIA 4WHQB 3MI1M 3T67A 3MV4A 3PCLA 2BUYB 4WHOD 4ILVA 2XSVA 1YKMA 3MV6A 3PCAM 1YKMB 4WHOA 1EO9B 4WHSA 4WHSB 3T63M 3I51A 2PCDM 4WHRA 2BUXA 4WHRB 2BUXB 2BUTB 2BURA 2BURB 2BUVA 2BUVB 4ILTA 1YKOA 2AZQA 3PCDM 3PCCA 3PCEM 2PCDA 3PCBM 1YKLA 1YKLB 3MI5M 2BUWA 2BUWB 1EOBA 3PCFA 3PCJM 3LMXA 1YKKA 1YKKB 1EOAA 3PCGA 4WHPD 1EOAB 3LKTA 4WHOB 2BOYA 3HKPA 3MI1A 5TD3A 1YKPA 3PCJA 3PCKM 3PCHM 1S9AA 3PCAA 1YKOB 1TMXA 3HGIA 1YKNA 3T63A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PCN M;  3O6R A;  3O5U A;  1EOC A;  1EOB B;  1EOC B;  2BUZ A;  3LXV M;  2BUZ B;  3HHX A;  3PCD A;  1DLQ A;  3PCE A;  1DLM A;  3PCB A;  3HJ8 A;  3PCI M;  2BUQ A;  2BV0 A;  3I4Y A;  2BUQ B;  4WHP A;  3MI5 A;  4WHP B;  3T67 M;  1EO2 A;  3PCL M;  1YKP B;  3TH1 A;  3N9T A;  3HJS A;  3I4V A;  3O6J A;  3MV6 M;  3PCM M;  4WHQ A;  1YKN B;  3HJQ A;  3O32 A;  2BUY A;  3PCK A;  3PCH A;  3MFL M;  4WHS D;  2XSR A;  2BUM A;  2BUM B;  1EO9 A;  3PCM A;  4WHR F;  3PCC M;  2BUT A;  3PCN A;  2BV0 B;  3MV4 M;  3MFL A;  1EO2 B;  2XSU A;  3PCF M;  3LXV A;  3LMX M;  3HHY A;  1DMH A;  2BUU A;  1DLT A;  2BUU B;  3PCG M;  3LKT M;  3PCI A;  4WHQ B;  3MI1 M;  3T67 A;  3MV4 A;  3PCL A;  2BUY B;  4WHO D;  4ILV A;  2XSV A;  1YKM A;  3MV6 A;  3PCA M;  1YKM B;  4WHO A;  1EO9 B;  4WHS A;  4WHS B;  3T63 M;  3I51 A;  2PCD M;  4WHR A;  2BUX A;  4WHR B;  2BUX B;  2BUT B;  2BUR A;  2BUR B;  2BUV A;  2BUV B;  4ILT A;  1YKO A;  2AZQ A;  3PCD M;  3PCC A;  3PCE M;  2PCD A;  3PCB M;  1YKL A;  1YKL B;  3MI5 M;  2BUW A;  2BUW B;  1EOB A;  3PCF A;  3PCJ M;  3LMX A;  1YKK A;  1YKK B;  1EOA A;  3PCG A;  4WHP D;  1EOA B;  3LKT A;  4WHO B;  2BOY A;  3HKP A;  3MI1 A;  5TD3 A;  1YKP A;  3PCJ A;  3PCK M;  3PCH M;  1S9A A;  3PCA A;  1YKO B;  1TMX A;  3HGI A;  1YKN A;  3T63 A; 
#chains in the Genus database with same CATH topology
 3PCN M;  3O6R A;  3O5U A;  1EOC A;  1EOB B;  1EOC B;  2BUZ A;  3LXV M;  2BUZ B;  3HHX A;  3PCD A;  1DLQ A;  3PCE A;  1DLM A;  3PCB A;  3HJ8 A;  3PCI M;  2BUQ A;  2BV0 A;  3I4Y A;  2BUQ B;  4WHP A;  3MI5 A;  4WHP B;  3T67 M;  1EO2 A;  3PCL M;  1YKP B;  3TH1 A;  3N9T A;  3HJS A;  3I4V A;  3O6J A;  3MV6 M;  3PCM M;  4WHQ A;  1YKN B;  3HJQ A;  3O32 A;  2BUY A;  3PCK A;  3PCH A;  3MFL M;  4WHS D;  2XSR A;  2BUM A;  2BUM B;  1EO9 A;  3PCM A;  4WHR F;  3PCC M;  2BUT A;  3PCN A;  2BV0 B;  3MV4 M;  3MFL A;  1EO2 B;  2XSU A;  3PCF M;  3LXV A;  3LMX M;  3HHY A;  1DMH A;  2BUU A;  1DLT A;  2BUU B;  3PCG M;  3LKT M;  3PCI A;  4WHQ B;  3MI1 M;  3T67 A;  3MV4 A;  3PCL A;  2BUY B;  4WHO D;  4ILV A;  2XSV A;  1YKM A;  3MV6 A;  3PCA M;  1YKM B;  4WHO A;  1EO9 B;  4WHS A;  4WHS B;  3T63 M;  3I51 A;  2PCD M;  4WHR A;  2BUX A;  4WHR B;  2BUX B;  2BUT B;  2BUR A;  2BUR B;  2BUV A;  2BUV B;  4ILT A;  1YKO A;  2AZQ A;  3PCD M;  3PCC A;  3PCE M;  2PCD A;  3PCB M;  1YKL A;  1YKL B;  3MI5 M;  2BUW A;  2BUW B;  1EOB A;  3PCF A;  3PCJ M;  3LMX A;  1YKK A;  1YKK B;  1EOA A;  3PCG A;  4WHP D;  1EOA B;  3LKT A;  4WHO B;  2BOY A;  3HKP A;  3MI1 A;  5TD3 A;  1YKP A;  3PCJ A;  3PCK M;  3PCH M;  1S9A A;  3PCA A;  1YKO B;  1TMX A;  3HGI A;  1YKN A;  3T63 A; 
#chains in the Genus database with same CATH homology
 3PCN M;  3O6R A;  3O5U A;  1EOC A;  1EOB B;  1EOC B;  2BUZ A;  3LXV M;  2BUZ B;  3HHX A;  3PCD A;  1DLQ A;  3PCE A;  1DLM A;  3PCB A;  3HJ8 A;  3PCI M;  2BUQ A;  2BV0 A;  3I4Y A;  2BUQ B;  4WHP A;  3MI5 A;  4WHP B;  3T67 M;  1EO2 A;  3PCL M;  1YKP B;  3TH1 A;  3N9T A;  3HJS A;  3I4V A;  3O6J A;  3MV6 M;  3PCM M;  4WHQ A;  1YKN B;  3HJQ A;  3O32 A;  2BUY A;  3PCK A;  3PCH A;  3MFL M;  4WHS D;  2XSR A;  2BUM A;  2BUM B;  1EO9 A;  3PCM A;  4WHR F;  3PCC M;  2BUT A;  3PCN A;  2BV0 B;  3MV4 M;  3MFL A;  1EO2 B;  2XSU A;  3PCF M;  3LXV A;  3LMX M;  3HHY A;  1DMH A;  2BUU A;  1DLT A;  2BUU B;  3PCG M;  3LKT M;  3PCI A;  4WHQ B;  3MI1 M;  3T67 A;  3MV4 A;  3PCL A;  2BUY B;  4WHO D;  4ILV A;  2XSV A;  1YKM A;  3MV6 A;  3PCA M;  1YKM B;  4WHO A;  1EO9 B;  4WHS A;  4WHS B;  3T63 M;  3I51 A;  2PCD M;  4WHR A;  2BUX A;  4WHR B;  2BUX B;  2BUT B;  2BUR A;  2BUR B;  2BUV A;  2BUV B;  4ILT A;  1YKO A;  2AZQ A;  3PCD M;  3PCC A;  3PCE M;  2PCD A;  3PCB M;  1YKL A;  1YKL B;  3MI5 M;  2BUW A;  2BUW B;  1EOB A;  3PCF A;  3PCJ M;  3LMX A;  1YKK A;  1YKK B;  1EOA A;  3PCG A;  4WHP D;  1EOA B;  3LKT A;  4WHO B;  2BOY A;  3HKP A;  3MI1 A;  5TD3 A;  1YKP A;  3PCJ A;  3PCK M;  3PCH M;  1S9A A;  3PCA A;  1YKO B;  1TMX A;  3HGI A;  1YKN A;  3T63 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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