3LNLA

Crystal structure of staphylococcus aureus protein sa1388
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
368
structure length
307
Chain Sequence
DPMKIADLMTLLDHHVPFSTAESWDNVGLLIGDEDVEVTGVLTALDCTLEVVNEAIEKGYNTIISHHPLIFKGVTSLKANGYGLIIRKLIQHDINLIAMHTNLDVNPHGVNMMLAKVMGLKNISIINNQQDVYYKVQKIEFMIDAYQKSRAEQLIKQYHPYETPVFDFIEIKQTSLYGLGVMAEVDNQMTLEDFAADIKSKLNIPSVRFVGESNQKIKRIAIIGGSGIGYEYQAVQQGADVFVTGDIKHHDALDAKIHGVNLIDINHYSEYVMKEGLKTLLMNWFNIEKINIDVEASTINTDPFQYI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
source organism Staphylococcus aureus subsp. aureus
publication title Structure of a Conserved Hypothetical Protein Sa1388 from S. aureus Reveals a Capped Hexameric Toroid with Two Pii Domain Lids and a Dinuclear Metal Center.
pubmed doi rcsb
molecule keywords UPF0135 protein SA1388
total genus 92
structure length 307
sequence length 368
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-02-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01784 NIF3 NIF3 (NGG1p interacting factor 3)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.260 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 3lnlA02
2NYDA 3LNLA
chains in the Genus database with same CATH superfamily
2NVXL 2XJQA 3S1ML 1R0GA 1RB9A 2JI1A 4JAEA 3M4OL 2CKCA 1Z92B 4A93L 4TVMA 5IP9L 1NXGA 3LNLA 2O5JD 1IU5A 2B5ID 4C3JL 3MQKB 2R92L 5MFZA 1B71A 3HOZL 2E2HL 3ZG6A 2XJPA 3KYUA 3I4ML 1TWHL 2YU9L 5JVG1 5GADc 1TWFL 1TWCL 3SS2A 2V0FA 2WAQP 2ERJA 4LHLA 3K35A 4ZN1B 2AQCA 1ODHA 3RZOL 3LPEB 1ZRPA 2MS3A 3HOUL 4AR6A 3J7Z1 2Y0SP 4GS7D 4XGHA 3H0GL 2PSMC 5C4JL 2ZIXA 2A68D 4A3JL 4A3EL 3KYVA 1B13A 2K2DA 1S2ZA 2VL6A 5GAGc 1FHMA 2RDVA 3HOXL 3RZDL 3PKJA 1LKMA 3KYXA 3HJWB 4BY1L 1WCML 1I3QL 1LKPA 3IU3I 3P8BA 2R7ZL 4X6AL 3NFPI 4A3KL 2A69D 5M3FL 1SFOL 5IYCL 2VUML 3A44A 3GTGL 2JA7L 3HAXC 2PMZP 1OWCA 4AI3A 2PVXA 4AYBP 2JA6L 3PO2L 4ZN3B 4E6YA 2M4YA 3PL5A 1BRFA 1YK5A 4C3IL 1VZGA 1R0JA 5C3EL 1SMMA 3S1NL 6RXNA 4YWMA 2XJRA 3H3VM 3JR7A 1RYTA 2NVYL 4ME3A 3HOWL 3HJYB 4K9FA 1BE7A 5MF6A 5M5YL 5M5XL 1S24A 4UY81 3PO3L 5RXNA 3GTQL 1SMWA 4AR5A 2V3BB 5MLC3 1YK4A 1VCXA 5FLML 3S2HL 3RZTA 2JI2A 3HKZP 1H7VA 3LWOB 1B2JA 1S30A 1BFYA 5IP7L 1R0IA 4AR3A 1CADA 2V0EA 2M6OA 3PZAA 3H97A 1C09A 2RFKB 1FHHA 1VZHA 1NXEA 3HOYL 3H9CA 3PKIA 1CAAA 2GMGA 3CQZL 5C44L 1RWDA 2XJSA 4JAFA 1QCVA 2KN9A 2XJVA 3GTLL 3HOVL 3GTOL 2H12A 5K2ME 1YUXA 2PVEA 4A3LL 4JAGA 4YWLA 3S2DL 2E2JL 2Z3RB 4TPUA 5GAEc 3VPBE 1PFUA 3LWVB 4A3IL 5DM61 4A3GL 3B0AB 3RZ6A 4V196 4A3ML 1NNQA 5FJ8L 5EINC 4WFN1 4Y7NL 3QQCE 3S1RL 3RYGA 5M5WL 3P2AA 1BQ9A 3S1QL 2CR8A 1DVBA 4AHXA 2A6HD 2DSXA 4BBRL 3J7Y1 4Y52L 2B63L 4LHNA 1LTLA 4BXXL 5EIOC 1RYQA 5H1Sc 1YUZA 2KKDA 5M3ML 1IW7D 4RXNA 2E2IL 3GTPL 3KYYA 2L0ZA 2QL0A 1IU6A 3B08B 1R0HA 2EY4E 2ERSA 4AHWA 3PIP1 4JADA 2AUSB 2Z3QB 4A3FL 2LCQA 1Y1VL 2C6AA 3PWFA 4AHZA 4B8CD 1SMUA 3QVDA 3PIO1 2WB1P 2BE5D 4XXBB 3GTJL 1T9QA 2HVYC 4A3CL 1TWGL 4C3HL 2C6BA 5JVH1 2JA8L 3H99A 3S16L 5AN9H 1PZXA 1I50L 2NYDA 5GAHc 1BQ8A 1PFYA 2NVQL 5C4XL 2XJUA 1QQTA 7RXNA 3LWQB 2A6ED 3LWPB 3MPSA 1T9PA 1RDVA 3MSUA 2JA5L 4A3BL 1R9TL 3H9BA 2JI3A 2J9UB 4AR4A 2NVTL 3S17L 3GTKL 3GTML 4BBSL 1TWAL 1I6HL 1OWBA 1PFVA 1RDGA 1R0FA 4BY7L 4U671 1E8JA 2XJTA 1B2OA 1WJVA 1IROA 2R93L 4C2M1 2M4VA 1T9OA 2CKAA 4AI1A 4AI0A 3FKIL 1PFWA 1K83L 3LWRB 4AHYA 5IYDL 1DX8A 5IY0A 3WWNB 3KYWA 1IRNA 3M3YL 3I4NL 4AI2A 1LKOA 3S15L 4A3DL 5AI2A 4POFA 1F4LA 5DM71 1Y1WL 4QIWP 5AI3A 5MFPA 2AYJA 8RXNA 3WWLA 3S14L 1YV1A 1P7PA 5MGNA 2M6PA 1JYBA 5IYBL 2APOB 4POGA 4G6BA 1QYBA 2PPTA 2PYAA 3K7AL 3FDJA 1VZIA 2HR5A
chains in the Genus database with same CATH topology
1YK5A 1RDVA 4WFN1 2XJQA 3MSUA 1RB9A 1VZGA 2JI1A 3QQCE 1R0GA 1R0JA 1SMMA 4JAEA 3RYGA 3P2AA 2CKCA 1BQ9A 2JI3A 1Z92B 2J9UB 6RXNA 4AR4A 2CR8A 1DVBA 4TVMA 4YWMA 2XJRA 4AHXA 1NXGA 2A6HD 2DSXA 1RYTA 3J7Y1 4ME3A 3LNLA 4LHNA 2O5JD 1IU5A 4K9FA 1BE7A 1LTLA 5MF6A 5EIOC 1RYQA 2B5ID 1OWBA 1RDGA 1R0FA 1YUZA 5H1Sc 5MFZA 4U671 1S24A 1B71A 4UY81 1E8JA 2XJTA 2KKDA 1IW7D 3ZG6A 2XJPA 4RXNA 5RXNA 3KYYA 3KYUA 2L0ZA 1B2OA 1SMWA 2QL0A 4AR5A 1WJVA 5JVG1 1IROA 2V3BB 5GADc 5MLC3 1IU6A 2M4VA 1T9OA 2CKAA 3B08B 1YK4A 1R0HA 1VCXA 3SS2A 4AI1A 3RZTA 2JI2A 4AI0A 1H7VA 2ERSA 2V0FA 1B2JA 4AHWA 2ERJA 3PIP1 4JADA 4LHLA 2Z3QB 1S30A 3K35A 2LCQA 4ZN1B 1BFYA 2C6AA 4AHYA 3PWFA 4AHZA 4B8CD 1R0IA 1ODHA 4AR3A 1SMUA 3QVDA 1CADA 2V0EA 5IY0A 3PIO1 1DX8A 2BE5D 4XXBB 3WWNB 2M6OA 3KYWA 3PZAA 1IRNA 1ZRPA 1C09A 3LPEB 1T9QA 2MS3A 1FHHA 4AI2A 4AR6A 3J7Z1 1LKOA 4GS7D 1VZHA 4XGHA 1NXEA 2C6BA 2PSMC 5JVH1 3PKIA 2ZIXA 1CAAA 2A68D 2GMGA 5AI2A 4POFA 5AN9H 1RWDA 3KYVA 5DM71 1B13A 2XJSA 2K2DA 4JAFA 1S2ZA 2VL6A 5GAGc 1FHMA 2NYDA 2RDVA 5AI3A 1QCVA 2KN9A 2XJVA 3PKJA 1LKMA 5GAHc 1BQ8A 3KYXA 5MFPA 2H12A 2AYJA 8RXNA 1LKPA 3WWLA 5K2ME 1YV1A 1YUXA 3IU3I 2PVEA 3P8BA 2M6PA 5MGNA 4JAGA 4YWLA 1JYBA 2XJUA 3NFPI 2Z3RB 4TPUA 2A69D 5GAEc 4POGA 3VPBE 3A44A 1QYBA 4G6BA 2PPTA 7RXNA 1OWCA 2A6ED 2PVXA 2PYAA 4AI3A 5DM61 4ZN3B 4E6YA 3MPSA 2M4YA 1T9PA 1BRFA 1VZIA 2HR5A 3B0AB 3RZ6A 4V196 1NNQA 5EINC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NYD A;  3LNL A; 
#chains in the Genus database with same CATH topology
 2NVX L;  2XJQ A;  3S1M L;  1R0G A;  1RB9 A;  2JI1 A;  4JAE A;  3M4O L;  2CKC A;  1Z92 B;  4A93 L;  4TVM A;  5IP9 L;  1NXG A;  3LNL A;  2O5J D;  1IU5 A;  2B5I D;  4C3J L;  3MQK B;  2R92 L;  5MFZ A;  1B71 A;  3HOZ L;  2E2H L;  3ZG6 A;  2XJP A;  3KYU A;  3I4M L;  1TWH L;  2YU9 L;  5JVG 1;  5GAD c;  1TWF L;  1TWC L;  3SS2 A;  2V0F A;  2WAQ P;  2ERJ A;  4LHL A;  3K35 A;  4ZN1 B;  2AQC A;  1ODH A;  3RZO L;  3LPE B;  1ZRP A;  2MS3 A;  3HOU L;  4AR6 A;  3J7Z 1;  2Y0S P;  4GS7 D;  4XGH A;  3H0G L;  2PSM C;  5C4J L;  2ZIX A;  2A68 D;  4A3J L;  4A3E L;  3KYV A;  1B13 A;  2K2D A;  1S2Z A;  2VL6 A;  5GAG c;  1FHM A;  2RDV A;  3HOX L;  3RZD L;  3PKJ A;  1LKM A;  3KYX A;  3HJW B;  4BY1 L;  1WCM L;  1I3Q L;  1LKP A;  3IU3 I;  3P8B A;  2R7Z L;  4X6A L;  3NFP I;  4A3K L;  2A69 D;  5M3F L;  1SFO L;  5IYC L;  2VUM L;  3A44 A;  3GTG L;  2JA7 L;  3HAX C;  2PMZ P;  1OWC A;  4AI3 A;  2PVX A;  4AYB P;  2JA6 L;  3PO2 L;  4ZN3 B;  4E6Y A;  2M4Y A;  3PL5 A;  1BRF A;  1YK5 A;  4C3I L;  1VZG A;  1R0J A;  5C3E L;  1SMM A;  3S1N L;  6RXN A;  4YWM A;  2XJR A;  3H3V M;  3JR7 A;  1RYT A;  2NVY L;  4ME3 A;  3HOW L;  3HJY B;  4K9F A;  1BE7 A;  5MF6 A;  5M5Y L;  5M5X L;  1S24 A;  4UY8 1;  3PO3 L;  5RXN A;  3GTQ L;  1SMW A;  4AR5 A;  2V3B B;  5MLC 3;  1YK4 A;  1VCX A;  5FLM L;  3S2H L;  3RZT A;  2JI2 A;  3HKZ P;  1H7V A;  3LWO B;  1B2J A;  1S30 A;  1BFY A;  5IP7 L;  1R0I A;  4AR3 A;  1CAD A;  2V0E A;  2M6O A;  3PZA A;  3H97 A;  1C09 A;  2RFK B;  1FHH A;  1VZH A;  1NXE A;  3HOY L;  3H9C A;  3PKI A;  1CAA A;  2GMG A;  3CQZ L;  5C44 L;  1RWD A;  2XJS A;  4JAF A;  1QCV A;  2KN9 A;  2XJV A;  3GTL L;  3HOV L;  3GTO L;  2H12 A;  5K2M E;  1YUX A;  2PVE A;  4A3L L;  4JAG A;  4YWL A;  3S2D L;  2E2J L;  2Z3R B;  4TPU A;  5GAE c;  3VPB E;  1PFU A;  3LWV B;  4A3I L;  5DM6 1;  4A3G L;  3B0A B;  3RZ6 A;  4V19 6;  4A3M L;  1NNQ A;  5FJ8 L;  5EIN C;  4WFN 1;  4Y7N L;  3QQC E;  3S1R L;  3RYG A;  5M5W L;  3P2A A;  1BQ9 A;  3S1Q L;  2CR8 A;  1DVB A;  4AHX A;  2A6H D;  2DSX A;  4BBR L;  3J7Y 1;  4Y52 L;  2B63 L;  4LHN A;  1LTL A;  4BXX L;  5EIO C;  1RYQ A;  5H1S c;  1YUZ A;  2KKD A;  5M3M L;  1IW7 D;  4RXN A;  2E2I L;  3GTP L;  3KYY A;  2L0Z A;  2QL0 A;  1IU6 A;  3B08 B;  1R0H A;  2EY4 E;  2ERS A;  4AHW A;  3PIP 1;  4JAD A;  2AUS B;  2Z3Q B;  4A3F L;  2LCQ A;  1Y1V L;  2C6A A;  3PWF A;  4AHZ A;  4B8C D;  1SMU A;  3QVD A;  3PIO 1;  2WB1 P;  2BE5 D;  4XXB B;  3GTJ L;  1T9Q A;  2HVY C;  4A3C L;  1TWG L;  4C3H L;  2C6B A;  5JVH 1;  2JA8 L;  3H99 A;  3S16 L;  5AN9 H;  1PZX A;  1I50 L;  2NYD A;  5GAH c;  1BQ8 A;  1PFY A;  2NVQ L;  5C4X L;  2XJU A;  1QQT A;  7RXN A;  3LWQ B;  2A6E D;  3LWP B;  3MPS A;  1T9P A;  1RDV A;  3MSU A;  2JA5 L;  4A3B L;  1R9T L;  3H9B A;  2JI3 A;  2J9U B;  4AR4 A;  2NVT L;  3S17 L;  3GTK L;  3GTM L;  4BBS L;  1TWA L;  1I6H L;  1OWB A;  1PFV A;  1RDG A;  1R0F A;  4BY7 L;  4U67 1;  1E8J A;  2XJT A;  1B2O A;  1WJV A;  1IRO A;  2R93 L;  4C2M 1;  2M4V A;  1T9O A;  2CKA A;  4AI1 A;  4AI0 A;  3FKI L;  1PFW A;  1K83 L;  3LWR B;  4AHY A;  5IYD L;  1DX8 A;  5IY0 A;  3WWN B;  3KYW A;  1IRN A;  3M3Y L;  3I4N L;  4AI2 A;  1LKO A;  3S15 L;  4A3D L;  5AI2 A;  4POF A;  1F4L A;  5DM7 1;  1Y1W L;  4QIW P;  5AI3 A;  5MFP A;  2AYJ A;  8RXN A;  3WWL A;  3S14 L;  1YV1 A;  1P7P A;  5MGN A;  2M6P A;  1JYB A;  5IYB L;  2APO B;  4POG A;  4G6B A;  1QYB A;  2PPT A;  2PYA A;  3K7A L;  3FDJ A;  1VZI A;  2HR5 A; 
#chains in the Genus database with same CATH homology
 1YK5 A;  1RDV A;  4WFN 1;  2XJQ A;  3MSU A;  1RB9 A;  1VZG A;  2JI1 A;  3QQC E;  1R0G A;  1R0J A;  1SMM A;  4JAE A;  3RYG A;  3P2A A;  2CKC A;  1BQ9 A;  2JI3 A;  1Z92 B;  2J9U B;  6RXN A;  4AR4 A;  2CR8 A;  1DVB A;  4TVM A;  4YWM A;  2XJR A;  4AHX A;  1NXG A;  2A6H D;  2DSX A;  1RYT A;  3J7Y 1;  4ME3 A;  3LNL A;  4LHN A;  2O5J D;  1IU5 A;  4K9F A;  1BE7 A;  1LTL A;  5MF6 A;  5EIO C;  1RYQ A;  2B5I D;  1OWB A;  1RDG A;  1R0F A;  1YUZ A;  5H1S c;  5MFZ A;  4U67 1;  1S24 A;  1B71 A;  4UY8 1;  1E8J A;  2XJT A;  2KKD A;  1IW7 D;  3ZG6 A;  2XJP A;  4RXN A;  5RXN A;  3KYY A;  3KYU A;  2L0Z A;  1B2O A;  1SMW A;  2QL0 A;  4AR5 A;  1WJV A;  5JVG 1;  1IRO A;  2V3B B;  5GAD c;  5MLC 3;  1IU6 A;  2M4V A;  1T9O A;  2CKA A;  3B08 B;  1YK4 A;  1R0H A;  1VCX A;  3SS2 A;  4AI1 A;  3RZT A;  2JI2 A;  4AI0 A;  1H7V A;  2ERS A;  2V0F A;  1B2J A;  4AHW A;  2ERJ A;  3PIP 1;  4JAD A;  4LHL A;  2Z3Q B;  1S30 A;  3K35 A;  2LCQ A;  4ZN1 B;  1BFY A;  2C6A A;  4AHY A;  3PWF A;  4AHZ A;  4B8C D;  1R0I A;  1ODH A;  4AR3 A;  1SMU A;  3QVD A;  1CAD A;  2V0E A;  5IY0 A;  3PIO 1;  1DX8 A;  2BE5 D;  4XXB B;  3WWN B;  2M6O A;  3KYW A;  3PZA A;  1IRN A;  1ZRP A;  1C09 A;  3LPE B;  1T9Q A;  2MS3 A;  1FHH A;  4AI2 A;  4AR6 A;  3J7Z 1;  1LKO A;  4GS7 D;  1VZH A;  4XGH A;  1NXE A;  2C6B A;  2PSM C;  5JVH 1;  3PKI A;  2ZIX A;  1CAA A;  2A68 D;  2GMG A;  5AI2 A;  4POF A;  5AN9 H;  1RWD A;  3KYV A;  5DM7 1;  1B13 A;  2XJS A;  2K2D A;  4JAF A;  1S2Z A;  2VL6 A;  5GAG c;  1FHM A;  2NYD A;  2RDV A;  5AI3 A;  1QCV A;  2KN9 A;  2XJV A;  3PKJ A;  1LKM A;  5GAH c;  1BQ8 A;  3KYX A;  5MFP A;  2H12 A;  2AYJ A;  8RXN A;  1LKP A;  3WWL A;  5K2M E;  1YV1 A;  1YUX A;  3IU3 I;  2PVE A;  3P8B A;  2M6P A;  5MGN A;  4JAG A;  4YWL A;  1JYB A;  2XJU A;  3NFP I;  2Z3R B;  4TPU A;  2A69 D;  5GAE c;  4POG A;  3VPB E;  3A44 A;  1QYB A;  4G6B A;  2PPT A;  7RXN A;  1OWC A;  2A6E D;  2PVX A;  2PYA A;  4AI3 A;  5DM6 1;  4ZN3 B;  4E6Y A;  3MPS A;  2M4Y A;  1T9P A;  1BRF A;  1VZI A;  2HR5 A;  3B0A B;  3RZ6 A;  4V19 6;  1NNQ A;  5EIN C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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