3LOGA

Crystal structure of mbti from mycobacterium tuberculosis
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
435
structure length
435
Chain Sequence
SSSIPMPAGVNPADLAAELAAVVTESVDEDYLLYECDGQWVLAAGVQAMVELDSDELRVIRDGVTRRQQWSGRPGAALGEAVDRLLLETDQAFGWVAFEFGVHRYGLQQRLAPHTPLARVFSPRTRIMVSEKEIRLFDAGIRHREAIDRLLATGVREVPQSRSVDVSDDPSGFRRRVAVAVDEIAAGRYHKVILSRCVEVPFAIDFPLTYRLGRRHNTPVRSFLLQLGGIRALGYSPELVTAVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIVEHAISVRSSLEEITDIAEPGSAAVIDFMTVRERGSVQHLGSTIRARLDPSSDRMAALEALFPAVTASGIPKAAGVEAIFRLDECPRGLYSGAVVMLSADGGLDAALTLRAAYQVGGRTWLRAGAGIIEESEPEREFEETCEKLSTLTPYLVAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords Isochorismate synthase/isochorismate-pyruvate lyase mbtI
publication title Inhibition studies of Mycobacterium tuberculosis salicylate synthase (MbtI).
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 151
structure length 435
sequence length 435
chains with identical sequence B, C, D
ec nomenclature ec 4.2.99.21: Isochorismate lyase.
pdb deposition date 2010-02-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00425 Chorismate_bind chorismate binding enzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.120.10 Alpha Beta 4-Layer Sandwich Anthranilate synthase Anthranilate synthase 3logA00
2G5FA 5JXZA 2I6YA 3HWOA 5JZDA 5CWAA 5JY9A 1I7QA 5JY4B 1I7SA 3GSEA 3R75A 4GRHA 2EUAA 3RV9A 3OS6A 2FN1A 1K0GA 3RV6A 3BZNA 5JY8A 3H9MA 1I1QA 3LOGA 3VEHA 3R74A 2FN0A 3RV7A 3RV8A 3R76A 5KCKA 3ST6A 1QDLA 3BZMA 5JY4A 1K0EA
chains in the Genus database with same CATH superfamily
2G5FA 5JXZA 2I6YA 3HWOA 5JZDA 5CWAA 5JY9A 1I7QA 5JY4B 1I7SA 3GSEA 3R75A 4GRHA 2EUAA 3RV9A 3OS6A 2FN1A 1K0GA 3RV6A 3BZNA 5JY8A 3H9MA 1I1QA 3LOGA 3VEHA 3R74A 2FN0A 3RV7A 3RV8A 3R76A 5KCKA 3ST6A 1QDLA 3BZMA 5JY4A 1K0EA
chains in the Genus database with same CATH topology
2G5FA 5JXZA 2I6YA 3HWOA 5JZDA 5CWAA 5JY9A 1I7QA 5JY4B 1I7SA 3GSEA 3R75A 4GRHA 2EUAA 3RV9A 3OS6A 2FN1A 1K0GA 3RV6A 3BZNA 5JY8A 3H9MA 1I1QA 3LOGA 3VEHA 3R74A 2FN0A 3RV7A 3RV8A 3R76A 5KCKA 3ST6A 1QDLA 3BZMA 5JY4A 1K0EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2G5F A;  5JXZ A;  2I6Y A;  3HWO A;  5JZD A;  5CWA A;  5JY9 A;  1I7Q A;  5JY4 B;  1I7S A;  3GSE A;  3R75 A;  4GRH A;  2EUA A;  3RV9 A;  3OS6 A;  2FN1 A;  1K0G A;  3RV6 A;  3BZN A;  5JY8 A;  3H9M A;  1I1Q A;  3LOG A;  3VEH A;  3R74 A;  2FN0 A;  3RV7 A;  3RV8 A;  3R76 A;  5KCK A;  3ST6 A;  1QDL A;  3BZM A;  5JY4 A;  1K0E A; 
#chains in the Genus database with same CATH topology
 2G5F A;  5JXZ A;  2I6Y A;  3HWO A;  5JZD A;  5CWA A;  5JY9 A;  1I7Q A;  5JY4 B;  1I7S A;  3GSE A;  3R75 A;  4GRH A;  2EUA A;  3RV9 A;  3OS6 A;  2FN1 A;  1K0G A;  3RV6 A;  3BZN A;  5JY8 A;  3H9M A;  1I1Q A;  3LOG A;  3VEH A;  3R74 A;  2FN0 A;  3RV7 A;  3RV8 A;  3R76 A;  5KCK A;  3ST6 A;  1QDL A;  3BZM A;  5JY4 A;  1K0E A; 
#chains in the Genus database with same CATH homology
 2G5F A;  5JXZ A;  2I6Y A;  3HWO A;  5JZD A;  5CWA A;  5JY9 A;  1I7Q A;  5JY4 B;  1I7S A;  3GSE A;  3R75 A;  4GRH A;  2EUA A;  3RV9 A;  3OS6 A;  2FN1 A;  1K0G A;  3RV6 A;  3BZN A;  5JY8 A;  3H9M A;  1I1Q A;  3LOG A;  3VEH A;  3R74 A;  2FN0 A;  3RV7 A;  3RV8 A;  3R76 A;  5KCK A;  3ST6 A;  1QDL A;  3BZM A;  5JY4 A;  1K0E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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