3LQXA

Srp ribonucleoprotein core complexed with cobalt hexammine
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
102
structure length
69
Chain Sequence
FDLNDFLEQKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna/rna binding protein
molecule keywords Signal recognition particle protein
publication title Structural and Energetic Analysis of Metal Ions Essential to SRP Signal Recognition Domain Assembly
pubmed rcsb
source organism Escherichia coli
total genus 19
structure length 69
sequence length 102
ec nomenclature
pdb deposition date 2010-02-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 3lqxA00
1QB2A 3KL4A 1QZXA 2PXQA 3DM5A 2PXTA 2PXUA 3NDBB 2PXPA 5GAHi 2PXFA 2PXEA 2JQEA 2V3CC 2PXDA 2FFHA 1MFQC 2XXAA 1DULA 2PXBA 3LQXA 2PXVA 2PXLA 5GAGi 1HQ1A 2PXKA
chains in the Genus database with same CATH superfamily
4YARA 3OKZA 3NDBB 1PNRA 2J7WA 4X4EA 1CQTA 1DULA 3SX0A 2BNNA 3LQXA 4EKIA 3JXBC 4X4CA 1HQ1A 3GN5B 3ZHIA 4MCXA 5DTRA 5JUWA 3QWGA 2H8RA 1R69A 4I6TA 5DTQA 2R63A 2WUSR 2LCVA 4I6UA 2PUAA 3KZ3A 2L8NA 2O49A 2LYJA 3QF3A 2HCSA 1LQCA 1ZZ8A 3UFDA 3A9YA 3GBFA 4J1XA 3EUSA 4GHJA 2HINA 4JCYA 1NERA 1Y7YA 1PRUA 3BS3A 2O38A 1LLIA 1SQ8A 2ICTA 2LYKA 1X57A 1Y9QA 5K98B 1JFSA 3F52A 2ICPA 3FYMA 5DRTA 2LYQA 2LLWA 1RZSA 4PU7A 4X4FA 3CECA 4MCTA 1JFTA 1OSLA 4I6RA 1RIOA 2XIUA 4NDWA 1GT0C 3L1PA 4PU4C 4EK9A 3GZDC 2IVGA 2PUDA 2GRLA 3OMTA 4DE9A 2KZ8A 1O4XA 2BNOA 3JXCL 1R63A 3QOXA 1ZZ6A 1QP7A 4Z5HA 1PRVA 1ZAYA 4YG7B 4EZIA 2PUGA 3GUUA 1UXDA 3CLCA 1POUA 1NW3A 2IVBA 4Z59A 2PXLA 5DTMA 3TELA 3G0TA 4X4GA 2J7UA 4F8DA 3RZZA 3PE5A 2PXEA 3GZCA 3MEJA 3R09A 2M4HA 4YG4A 1WH6A 2FFHA 1RZRD 3SR4A 2XCJA 1ZZCA 2PXVA 5GAGi 2PPXA 3VK0A 3KL4A 4I8TA 3NXHA 3B7HA 4O8BA 3OP9A 4HRAA 1DWKA 2XXAA 1RZRA 2EWTA 3HZIB 1QPZA 1U2ZA 3ZPXA 3M9LA 1QB2A 1RPEL 1B0NA 2PUCA 1HF0A 2A6CA 2LLVA 3PXPA 2MQKA 3SCHA 1ZS4A 3KXAA 1BDHA 1ADRA 1ZZBA 2JVLA 1BDIA 1S7EA 1QP0A 4PU8A 2LNMA 2CROA 4ER3A 2PUBA 3MLFA 4IVZA 1IC8A 4OBMA 3CROL 1NEQA 2PUFA 4JCXA 3QYXA 2V3CC 1UXCA 2PUEA 2KEKA 4DE8A 2HFZA 4J1WA 1PRAA 2HCNA 2MXDA 1WH8A 1CJGA 2PXKA 2EBYA 3A9ZA 3O9XA 1QZXA 2WIUB 2PXQA 1WETA 2D5VA 3R1FA 2PE5A 1ZZ7A 2PXTA 4EQZA 4EKGA 1WIZA 3QFIA 2PXDA 2LYPA 2XI8A 2JCGA 2XXPA 3ME5A 1ZPQA 2KEIA 2BJCA 3ZKCA 4FN3A 4YBAA 3U3WA 3BDNA 1UTXA 4Z5DA 1OCTC 2LYRA 4Y42A 2IUOA 2KEJA 3F6WA 2MEZA 1LMB3 3SCGA 3JXDL 1X2LA 4ER7A 2FJRA 2XSDC 4ER5A 1DW9A 3ZHMA 2PXPA 5A7LA 3H5TA 3UWPA 4YG1A 2PXFA 2IV1A 3IVPA 1PERL 1VPWA 3F51A 2L1PA 2CSFA 1EFAA 2ODRD 2AW6A 3D1NI 2LYSA 2GRMA 3LISA 3QOWA 4OB4A 1LCCA 2JQEA 3QQ6A 3FYAA 2PXBA 2LYLA 2B5AA 1QP4A 4IA8A 1AU7A 2OR1L 3G5GA 3S8QA 3GZDA 2XXQA 2PXUA 2PIJA 1LCDA 3DNVB 4Z58A 5GAHi 1MFQC 4GQMA 2KPJA 2R1JL 2YBDA 3OQOA 3SCFA 4X4IA 5DT2A 1ZZ9A 1JH9A 4FBIA 2AXVA 3TRBA 3NZLA 3VWSA 1ZUGA 4JQDA 4X4BA 3NROA 2IVQA 4PU3C 4WVLA 2IU7A 1JWLA 4ER0A 3G7DA 4ER6A 3TEPA 4Z5CA 4X4HA 1E3OC 2OFYA 3FMYA 2HSGA 3LFPA 2XJ3A 2AWIA 3A9XA 2AXUA 4X4DA 3OWQA 3DM5A 1QQAA 4IWRA 2GZUA 2EF8A 1QQBA 2AUWA 3OQMA 3OQNA 2L49A 3GN5A 1ZVVA 2AXZA 2VEOA 5DRYA 3BD1A 5DSXA 2O4AA 3TFLA 2BNMA 1XWRA 1YSEA 4Q2JA 1L1MA 3KJXA
chains in the Genus database with same CATH topology
1QB2A 3KL4A 1QZXA 2PXQA 3DM5A 2PXTA 2PXUA 3NDBB 2PXPA 5GAHi 2PXFA 2PXEA 2JQEA 2V3CC 2PXDA 2FFHA 1MFQC 2XXAA 1DULA 2PXBA 3LQXA 2PXVA 2PXLA 5GAGi 1HQ1A 2PXKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QB2 A;  3KL4 A;  1QZX A;  2PXQ A;  3DM5 A;  2PXT A;  2PXU A;  3NDB B;  2PXP A;  5GAH i;  2PXF A;  2PXE A;  2JQE A;  2V3C C;  2PXD A;  2FFH A;  1MFQ C;  2XXA A;  1DUL A;  2PXB A;  3LQX A;  2PXV A;  2PXL A;  5GAG i;  1HQ1 A;  2PXK A; 
#chains in the Genus database with same CATH topology
 4YAR A;  3OKZ A;  3NDB B;  1PNR A;  2J7W A;  4X4E A;  1CQT A;  1DUL A;  3SX0 A;  2BNN A;  3LQX A;  4EKI A;  3JXB C;  4X4C A;  1HQ1 A;  3GN5 B;  3ZHI A;  4MCX A;  5DTR A;  5JUW A;  3QWG A;  2H8R A;  1R69 A;  4I6T A;  5DTQ A;  2R63 A;  2WUS R;  2LCV A;  4I6U A;  2PUA A;  3KZ3 A;  2L8N A;  2O49 A;  2LYJ A;  3QF3 A;  2HCS A;  1LQC A;  1ZZ8 A;  3UFD A;  3A9Y A;  3GBF A;  4J1X A;  3EUS A;  4GHJ A;  2HIN A;  4JCY A;  1NER A;  1Y7Y A;  1PRU A;  3BS3 A;  2O38 A;  1LLI A;  1SQ8 A;  2ICT A;  2LYK A;  1X57 A;  1Y9Q A;  5K98 B;  1JFS A;  3F52 A;  2ICP A;  3FYM A;  5DRT A;  2LYQ A;  2LLW A;  1RZS A;  4PU7 A;  4X4F A;  3CEC A;  4MCT A;  1JFT A;  1OSL A;  4I6R A;  1RIO A;  2XIU A;  4NDW A;  1GT0 C;  3L1P A;  4PU4 C;  4EK9 A;  3GZD C;  2IVG A;  2PUD A;  2GRL A;  3OMT A;  4DE9 A;  2KZ8 A;  1O4X A;  2BNO A;  3JXC L;  1R63 A;  3QOX A;  1ZZ6 A;  1QP7 A;  4Z5H A;  1PRV A;  1ZAY A;  4YG7 B;  4EZI A;  2PUG A;  3GUU A;  1UXD A;  3CLC A;  1POU A;  1NW3 A;  2IVB A;  4Z59 A;  2PXL A;  5DTM A;  3TEL A;  3G0T A;  4X4G A;  2J7U A;  4F8D A;  3RZZ A;  3PE5 A;  2PXE A;  3GZC A;  3MEJ A;  3R09 A;  2M4H A;  4YG4 A;  1WH6 A;  2FFH A;  1RZR D;  3SR4 A;  2XCJ A;  1ZZC A;  2PXV A;  5GAG i;  2PPX A;  3VK0 A;  3KL4 A;  4I8T A;  3NXH A;  3B7H A;  4O8B A;  3OP9 A;  4HRA A;  1DWK A;  2XXA A;  1RZR A;  2EWT A;  3HZI B;  1QPZ A;  1U2Z A;  3ZPX A;  3M9L A;  1QB2 A;  1RPE L;  1B0N A;  2PUC A;  1HF0 A;  2A6C A;  2LLV A;  3PXP A;  2MQK A;  3SCH A;  1ZS4 A;  3KXA A;  1BDH A;  1ADR A;  1ZZB A;  2JVL A;  1BDI A;  1S7E A;  1QP0 A;  4PU8 A;  2LNM A;  2CRO A;  4ER3 A;  2PUB A;  3MLF A;  4IVZ A;  1IC8 A;  4OBM A;  3CRO L;  1NEQ A;  2PUF A;  4JCX A;  3QYX A;  2V3C C;  1UXC A;  2PUE A;  2KEK A;  4DE8 A;  2HFZ A;  4J1W A;  1PRA A;  2HCN A;  2MXD A;  1WH8 A;  1CJG A;  2PXK A;  2EBY A;  3A9Z A;  3O9X A;  1QZX A;  2WIU B;  2PXQ A;  1WET A;  2D5V A;  3R1F A;  2PE5 A;  1ZZ7 A;  2PXT A;  4EQZ A;  4EKG A;  1WIZ A;  3QFI A;  2PXD A;  2LYP A;  2XI8 A;  2JCG A;  2XXP A;  3ME5 A;  1ZPQ A;  2KEI A;  2BJC A;  3ZKC A;  4FN3 A;  4YBA A;  3U3W A;  3BDN A;  1UTX A;  4Z5D A;  1OCT C;  2LYR A;  4Y42 A;  2IUO A;  2KEJ A;  3F6W A;  2MEZ A;  1LMB 3;  3SCG A;  3JXD L;  1X2L A;  4ER7 A;  2FJR A;  2XSD C;  4ER5 A;  1DW9 A;  3ZHM A;  2PXP A;  5A7L A;  3H5T A;  3UWP A;  4YG1 A;  2PXF A;  2IV1 A;  3IVP A;  1PER L;  1VPW A;  3F51 A;  2L1P A;  2CSF A;  1EFA A;  2ODR D;  2AW6 A;  3D1N I;  2LYS A;  2GRM A;  3LIS A;  3QOW A;  4OB4 A;  1LCC A;  2JQE A;  3QQ6 A;  3FYA A;  2PXB A;  2LYL A;  2B5A A;  1QP4 A;  4IA8 A;  1AU7 A;  2OR1 L;  3G5G A;  3S8Q A;  3GZD A;  2XXQ A;  2PXU A;  2PIJ A;  1LCD A;  3DNV B;  4Z58 A;  5GAH i;  1MFQ C;  4GQM A;  2KPJ A;  2R1J L;  2YBD A;  3OQO A;  3SCF A;  4X4I A;  5DT2 A;  1ZZ9 A;  1JH9 A;  4FBI A;  2AXV A;  3TRB A;  3NZL A;  3VWS A;  1ZUG A;  4JQD A;  4X4B A;  3NRO A;  2IVQ A;  4PU3 C;  4WVL A;  2IU7 A;  1JWL A;  4ER0 A;  3G7D A;  4ER6 A;  3TEP A;  4Z5C A;  4X4H A;  1E3O C;  2OFY A;  3FMY A;  2HSG A;  3LFP A;  2XJ3 A;  2AWI A;  3A9X A;  2AXU A;  4X4D A;  3OWQ A;  3DM5 A;  1QQA A;  4IWR A;  2GZU A;  2EF8 A;  1QQB A;  2AUW A;  3OQM A;  3OQN A;  2L49 A;  3GN5 A;  1ZVV A;  2AXZ A;  2VEO A;  5DRY A;  3BD1 A;  5DSX A;  2O4A A;  3TFL A;  2BNM A;  1XWR A;  1YSE A;  4Q2J A;  1L1M A;  3KJX A; 
#chains in the Genus database with same CATH homology
 1QB2 A;  3KL4 A;  1QZX A;  2PXQ A;  3DM5 A;  2PXT A;  2PXU A;  3NDB B;  2PXP A;  5GAH i;  2PXF A;  2PXE A;  2JQE A;  2V3C C;  2PXD A;  2FFH A;  1MFQ C;  2XXA A;  1DUL A;  2PXB A;  3LQX A;  2PXV A;  2PXL A;  5GAG i;  1HQ1 A;  2PXK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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