3LQXA

Srp ribonucleoprotein core complexed with cobalt hexammine
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
102
structure length
69
Chain Sequence
FDLNDFLEQKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Energetic Analysis of Metal Ions Essential to SRP Signal Recognition Domain Assembly
pubmed rcsb
molecule tags Rna/rna binding protein
source organism Escherichia coli
molecule keywords Signal recognition particle protein
total genus 19
structure length 69
sequence length 102
ec nomenclature
pdb deposition date 2010-02-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 3lqxA00
1QZXA 1HQ1A 2FFHA 2PXFA 2JQEA 5GAGi 2PXLA 3NDBB 2V3CC 3LQXA 1QB2A 2PXEA 2PXQA 2XXAA 2PXTA 1MFQC 1DULA 3KL4A 2PXBA 2PXVA 3DM5A 2PXUA 2PXDA 2PXPA 5GAHi 2PXKA
chains in the Genus database with same CATH superfamily
1QZXA 2KZ8A 2ICPA 2L49A 3GN5A 1ZAYA 5GAGi 3KXAA 4I6RA 3MEJA 4NDWA 3D1NI 3ZKCA 2PUAA 3CLCA 1ZUGA 1RZRD 1VPWA 4ER0A 2LYLA 1CJGA 3OWQA 4JCXA 2OFYA 4Q2JA 1ZZ7A 3B7HA 1DWKA 4F8DA 1EFAA 3DNVB 4X4CA 4I6TA 2GZUA 1L1MA 3TELA 3NROA 2AXUA 3CROL 2PXEA 1ZPQA 3M9LA 4ER3A 2PXTA 1NEQA 5DTQA 1ADRA 2PXUA 1RZSA 2J7WA 4I6UA 2LYRA 3RZZA 2ODRD 1OCTC 2PXPA 1HQ1A 2J7UA 1Y9QA 1RZRA 1UXDA 2O49A 2PXLA 3F52A 2LYKA 2AUWA 3FYMA 3R1FA 3TEPA 3OKZA 4JQDA 3QOWA 1JH9A 2HINA 3CECA 2HCSA 2KPJA 4JCYA 3O9XA 4PU4C 2VEOA 3LISA 3SR4A 3EUSA 2JVLA 3NXHA 1PRUA 1X2LA 2LLWA 2WUSR 1WH6A 1JFSA 2R63A 2IVGA 2IVBA 4I8TA 1WIZA 4GHJA 1DULA 3KL4A 4EK9A 2PUFA 3G5GA 3R09A 2L8NA 3OP9A 2BJCA 1JFTA 3GZCA 3NZLA 2AWIA 5DT2A 2LYJA 1LLIA 2PXFA 5K98B 3GUUA 4Z5HA 4J1WA 2O4AA 4YBAA 3FYAA 3QQ6A 4EKIA 1O4XA 2BNNA 3HZIB 2XCJA 3OQNA 2H8RA 4YG7B 4X4HA 2PUEA 1ZZBA 3GZDC 1ZZ6A 1PRVA 1QP7A 4X4BA 1BDIA 1RPEL 3NDBB 3JXBC 1U2ZA 1UTXA 1LCDA 4GQMA 3GZDA 1S7EA 2XSDC 3ME5A 2PXVA 2AXZA 1BDHA 2O38A 1LQCA 5A7LA 3QWGA 2WIUB 2OR1L 3JXDL 2EBYA 2IUOA 4MCTA 1QP0A 4Z5DA 2PUCA 4EQZA 3BDNA 2R1JL 3BS3A 4IVZA 1XWRA 3IVPA 2V3CC 1UXCA 3PXPA 2PXQA 1NW3A 2GRLA 2YBDA 2PXBA 4YARA 3DM5A 1YSEA 5DTRA 3OQOA 1ZVVA 4J1XA 2PUGA 4OBMA 4X4EA 3ZHMA 4OB4A 4Y42A 1POUA 3F51A 3GBFA 2PUBA 1QP4A 1PRAA 4YG4A 1X57A 4ER5A 2D5VA 2PXDA 2HFZA 1QQAA 2MEZA 1LMB3 2PXKA 2EWTA 1ZS4A 2GRMA 3UFDA 2L1PA 2JCGA 1R69A 2XIUA 2HCNA 4YG1A 3QFIA 2XXAA 3TFLA 3A9XA 3H5TA 4EKGA 2LYSA 2HSGA 1GT0C 2FJRA 1B0NA 4PU7A 1DW9A 3SCFA 2MQKA 3A9ZA 1AU7A 3QOXA 2IU7A 2IVQA 2PE5A 4EZIA 4Z5CA 2ICTA 4ER7A 2LYPA 4IA8A 3G7DA 2FFHA 3UWPA 3OMTA 2M4HA 1R63A 4HRAA 2XXQA 3MLFA 4WVLA 2CROA 3SCGA 2XJ3A 4X4GA 3F6WA 2B5AA 2XXPA 3TRBA 3KZ3A 1Y7YA 3KJXA 3SX0A 3ZHIA 5DRYA 4MCXA 2A6CA 5DSXA 2KEJA 5DTMA 2LCVA 2PPXA 5GAHi 1SQ8A 2EF8A 2IV1A 3OQMA 4IWRA 1E3OC 4DE9A 4X4FA 4DE8A 2XI8A 2BNMA 2KEKA 2LYQA 3PE5A 4Z58A 2BNOA 1PNRA 4X4DA 2AW6A 3QF3A 1QQBA 2CSFA 1WETA 3A9YA 3BD1A 4X4IA 3SCHA 3S8QA 2PIJA 1WH8A 3U3WA 3L1PA 1ZZCA 1PERL 4Z59A 1OSLA 4PU8A 3LFPA 4O8BA 2JQEA 3VWSA 1JWLA 1QPZA 3VK0A 4FBIA 2LNMA 4PU3C 1HF0A 4FN3A 1ZZ9A 1MFQC 4ER6A 3JXCL 3FMYA 1CQTA 1NERA 3QYXA 1IC8A 2LLVA 3ZPXA 1ZZ8A 2KEIA 3LQXA 1QB2A 2MXDA 5JUWA 5DRTA 3G0TA 2PUDA 1LCCA 2AXVA 1RIOA 3GN5B
chains in the Genus database with same CATH topology
1QZXA 1HQ1A 2FFHA 2PXFA 2JQEA 5GAGi 2PXLA 3NDBB 2V3CC 3LQXA 1QB2A 2PXEA 2PXQA 2XXAA 2PXTA 1MFQC 1DULA 3KL4A 2PXBA 2PXVA 3DM5A 2PXUA 2PXDA 2PXPA 5GAHi 2PXKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QZX A;  1HQ1 A;  2FFH A;  2PXF A;  2JQE A;  5GAG i;  2PXL A;  3NDB B;  2V3C C;  3LQX A;  1QB2 A;  2PXE A;  2PXQ A;  2XXA A;  2PXT A;  1MFQ C;  1DUL A;  3KL4 A;  2PXB A;  2PXV A;  3DM5 A;  2PXU A;  2PXD A;  2PXP A;  5GAH i;  2PXK A; 
#chains in the Genus database with same CATH topology
 1QZX A;  2KZ8 A;  2ICP A;  2L49 A;  3GN5 A;  1ZAY A;  5GAG i;  3KXA A;  4I6R A;  3MEJ A;  4NDW A;  3D1N I;  3ZKC A;  2PUA A;  3CLC A;  1ZUG A;  1RZR D;  1VPW A;  4ER0 A;  2LYL A;  1CJG A;  3OWQ A;  4JCX A;  2OFY A;  4Q2J A;  1ZZ7 A;  3B7H A;  1DWK A;  4F8D A;  1EFA A;  3DNV B;  4X4C A;  4I6T A;  2GZU A;  1L1M A;  3TEL A;  3NRO A;  2AXU A;  3CRO L;  2PXE A;  1ZPQ A;  3M9L A;  4ER3 A;  2PXT A;  1NEQ A;  5DTQ A;  1ADR A;  2PXU A;  1RZS A;  2J7W A;  4I6U A;  2LYR A;  3RZZ A;  2ODR D;  1OCT C;  2PXP A;  1HQ1 A;  2J7U A;  1Y9Q A;  1RZR A;  1UXD A;  2O49 A;  2PXL A;  3F52 A;  2LYK A;  2AUW A;  3FYM A;  3R1F A;  3TEP A;  3OKZ A;  4JQD A;  3QOW A;  1JH9 A;  2HIN A;  3CEC A;  2HCS A;  2KPJ A;  4JCY A;  3O9X A;  4PU4 C;  2VEO A;  3LIS A;  3SR4 A;  3EUS A;  2JVL A;  3NXH A;  1PRU A;  1X2L A;  2LLW A;  2WUS R;  1WH6 A;  1JFS A;  2R63 A;  2IVG A;  2IVB A;  4I8T A;  1WIZ A;  4GHJ A;  1DUL A;  3KL4 A;  4EK9 A;  2PUF A;  3G5G A;  3R09 A;  2L8N A;  3OP9 A;  2BJC A;  1JFT A;  3GZC A;  3NZL A;  2AWI A;  5DT2 A;  2LYJ A;  1LLI A;  2PXF A;  5K98 B;  3GUU A;  4Z5H A;  4J1W A;  2O4A A;  4YBA A;  3FYA A;  3QQ6 A;  4EKI A;  1O4X A;  2BNN A;  3HZI B;  2XCJ A;  3OQN A;  2H8R A;  4YG7 B;  4X4H A;  2PUE A;  1ZZB A;  3GZD C;  1ZZ6 A;  1PRV A;  1QP7 A;  4X4B A;  1BDI A;  1RPE L;  3NDB B;  3JXB C;  1U2Z A;  1UTX A;  1LCD A;  4GQM A;  3GZD A;  1S7E A;  2XSD C;  3ME5 A;  2PXV A;  2AXZ A;  1BDH A;  2O38 A;  1LQC A;  5A7L A;  3QWG A;  2WIU B;  2OR1 L;  3JXD L;  2EBY A;  2IUO A;  4MCT A;  1QP0 A;  4Z5D A;  2PUC A;  4EQZ A;  3BDN A;  2R1J L;  3BS3 A;  4IVZ A;  1XWR A;  3IVP A;  2V3C C;  1UXC A;  3PXP A;  2PXQ A;  1NW3 A;  2GRL A;  2YBD A;  2PXB A;  4YAR A;  3DM5 A;  1YSE A;  5DTR A;  3OQO A;  1ZVV A;  4J1X A;  2PUG A;  4OBM A;  4X4E A;  3ZHM A;  4OB4 A;  4Y42 A;  1POU A;  3F51 A;  3GBF A;  2PUB A;  1QP4 A;  1PRA A;  4YG4 A;  1X57 A;  4ER5 A;  2D5V A;  2PXD A;  2HFZ A;  1QQA A;  2MEZ A;  1LMB 3;  2PXK A;  2EWT A;  1ZS4 A;  2GRM A;  3UFD A;  2L1P A;  2JCG A;  1R69 A;  2XIU A;  2HCN A;  4YG1 A;  3QFI A;  2XXA A;  3TFL A;  3A9X A;  3H5T A;  4EKG A;  2LYS A;  2HSG A;  1GT0 C;  2FJR A;  1B0N A;  4PU7 A;  1DW9 A;  3SCF A;  2MQK A;  3A9Z A;  1AU7 A;  3QOX A;  2IU7 A;  2IVQ A;  2PE5 A;  4EZI A;  4Z5C A;  2ICT A;  4ER7 A;  2LYP A;  4IA8 A;  3G7D A;  2FFH A;  3UWP A;  3OMT A;  2M4H A;  1R63 A;  4HRA A;  2XXQ A;  3MLF A;  4WVL A;  2CRO A;  3SCG A;  2XJ3 A;  4X4G A;  3F6W A;  2B5A A;  2XXP A;  3TRB A;  3KZ3 A;  1Y7Y A;  3KJX A;  3SX0 A;  3ZHI A;  5DRY A;  4MCX A;  2A6C A;  5DSX A;  2KEJ A;  5DTM A;  2LCV A;  2PPX A;  5GAH i;  1SQ8 A;  2EF8 A;  2IV1 A;  3OQM A;  4IWR A;  1E3O C;  4DE9 A;  4X4F A;  4DE8 A;  2XI8 A;  2BNM A;  2KEK A;  2LYQ A;  3PE5 A;  4Z58 A;  2BNO A;  1PNR A;  4X4D A;  2AW6 A;  3QF3 A;  1QQB A;  2CSF A;  1WET A;  3A9Y A;  3BD1 A;  4X4I A;  3SCH A;  3S8Q A;  2PIJ A;  1WH8 A;  3U3W A;  3L1P A;  1ZZC A;  1PER L;  4Z59 A;  1OSL A;  4PU8 A;  3LFP A;  4O8B A;  2JQE A;  3VWS A;  1JWL A;  1QPZ A;  3VK0 A;  4FBI A;  2LNM A;  4PU3 C;  1HF0 A;  4FN3 A;  1ZZ9 A;  1MFQ C;  4ER6 A;  3JXC L;  3FMY A;  1CQT A;  1NER A;  3QYX A;  1IC8 A;  2LLV A;  3ZPX A;  1ZZ8 A;  2KEI A;  3LQX A;  1QB2 A;  2MXD A;  5JUW A;  5DRT A;  3G0T A;  2PUD A;  1LCC A;  2AXV A;  1RIO A;  3GN5 B; 
#chains in the Genus database with same CATH homology
 1QZX A;  1HQ1 A;  2FFH A;  2PXF A;  2JQE A;  5GAG i;  2PXL A;  3NDB B;  2V3C C;  3LQX A;  1QB2 A;  2PXE A;  2PXQ A;  2XXA A;  2PXT A;  1MFQ C;  1DUL A;  3KL4 A;  2PXB A;  2PXV A;  3DM5 A;  2PXU A;  2PXD A;  2PXP A;  5GAH i;  2PXK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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