3LQXA

Srp ribonucleoprotein core complexed with cobalt hexammine
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
102
structure length
69
Chain Sequence
FDLNDFLEQKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna/rna binding protein
molecule keywords Signal recognition particle protein
publication title Structural and Energetic Analysis of Metal Ions Essential to SRP Signal Recognition Domain Assembly
pubmed rcsb
source organism Escherichia coli
total genus 19
structure length 69
sequence length 102
ec nomenclature
pdb deposition date 2010-02-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 3lqxA00
2FFHA 1DULA 5GAHi 2PXLA 3NDBB 1QZXA 3LQXA 1HQ1A 2PXQA 5GAGi 2PXEA 2PXTA 2PXUA 2XXAA 1MFQC 2PXDA 2V3CC 2PXVA 3DM5A 3KL4A 1QB2A 2PXKA 2PXPA 2PXFA 2PXBA 2JQEA
chains in the Genus database with same CATH superfamily
4ER3A 1QP0A 3H5TA 2PUFA 2PXLA 2KEKA 5DRYA 2IVGA 5JUWA 2PXQA 3FYAA 2BNOA 2LLWA 3KXAA 3QOXA 3R1FA 2HSGA 2PXUA 1WH6A 3SCHA 3FMYA 4DE8A 1E3OC 2R63A 3JXBC 2PUBA 4MCXA 3F52A 3IVPA 1PNRA 2ICPA 2HINA 4OB4A 1DULA 4ER6A 2KZ8A 4EZIA 5DTQA 3ZKCA 1HQ1A 4WVLA 2LNMA 3F51A 2AW6A 4J1XA 4GQMA 3NROA 4FN3A 2IU7A 3JXDL 3PXPA 3QWGA 4I8TA 1ZS4A 2PUCA 2KPJA 2IUOA 4X4GA 2AWIA 5A7LA 2LCVA 3LQXA 5DTRA 2XI8A 4EKGA 2AXUA 2PXDA 4GHJA 3CROL 1EFAA 3UFDA 3ME5A 1X2LA 3GZCA 2PXBA 2LYRA 4YBAA 5DRTA 1PERL 2YBDA 2OFYA 3SR4A 2AUWA 4JQDA 1ZZCA 4MCTA 2LYLA 2MEZA 4I6RA 3BDNA 1BDIA 3SX0A 3MLFA 2V3CC 2BNMA 2H8RA 3MEJA 2GRLA 4HRAA 3EUSA 1LMB3 4X4FA 1BDHA 1AU7A 2PUDA 1ZAYA 3U3WA 1DW9A 3SCFA 2BJCA 2IVBA 2LYQA 1ZPQA 5K98B 4OBMA 4X4DA 3G7DA 1ZZ7A 3GUUA 2CSFA 3L1PA 3GZDC 1JFSA 1MFQC 2PUAA 1ZZ6A 3KZ3A 2LYKA 2IVQA 3TELA 4Q2JA 2JQEA 4Z5DA 1VPWA 1ZUGA 3TEPA 2WUSR 1SQ8A 4X4HA 3NDBB 3JXCL 4J1WA 2JCGA 3G5GA 3VK0A 1YSEA 3NZLA 3TFLA 3R09A 2O38A 2XJ3A 1B0NA 1NERA 3CLCA 4PU4C 4Y42A 3NXHA 3HZIB 3QFIA 3VWSA 2O4AA 2VEOA 1LCCA 1NW3A 1GT0C 3BD1A 3OKZA 2LYSA 4ER0A 4X4BA 3A9ZA 2L49A 1UTXA 2R1JL 4DE9A 4Z5CA 1LLIA 2PXEA 2XXPA 2PIJA 1Y7YA 4X4CA 4Z59A 1OSLA 3KL4A 1R69A 4F8DA 3ZPXA 1POUA 3LISA 2FFHA 2GZUA 1UXCA 4JCXA 5GAGi 4X4IA 3OP9A 3A9YA 4IVZA 1QQBA 2PE5A 1OCTC 2FJRA 3TRBA 4PU3C 2XXQA 2OR1L 2L1PA 1PRUA 1R63A 1QB2A 2HCNA 1O4XA 3OQMA 1ZVVA 3KJXA 4EK9A 1QZXA 1NEQA 1ZZBA 2XCJA 1X57A 4ER7A 1U2ZA 3OQOA 1RZRD 4YARA 2HCSA 3B7HA 4I6TA 1JH9A 1QP7A 5DSXA 3QF3A 2PXVA 1ADRA 3RZZA 2XIUA 4X4EA 3ZHMA 2EWTA 3OMTA 4IA8A 3GN5A 2MQKA 3G0TA 1RPEL 2HFZA 4ER5A 2M4HA 2CROA 1LQCA 2XXAA 2LYJA 1JFTA 3A9XA 4NDWA 4YG7B 5DT2A 3GN5B 2KEJA 1UXDA 1QPZA 1ZZ8A 3ZHIA 4PU8A 2J7UA 2PUEA 2BNNA 2XSDC 2JVLA 3OWQA 4YG1A 2AXVA 4Z58A 2L8NA 1WIZA 3DM5A 3F6WA 2LLVA 2AXZA 2ICTA 1HF0A 2PXKA 2O49A 2PXFA 3OQNA 1PRVA 1L1MA 5DTMA 1WH8A 4IWRA 5GAHi 3GZDA 3M9LA 4PU7A 3CECA 3BS3A 3LFPA 3DNVB 1IC8A 1JWLA 2PXTA 4Z5HA 2PUGA 3QQ6A 3D1NI 1DWKA 4YG4A 3O9XA 2WIUB 3SCGA 3QYXA 1LCDA 2EBYA 2A6CA 1RIOA 3PE5A 1CJGA 1CQTA 1QP4A 1S7EA 1ZZ9A 3FYMA 2PXPA 1WETA 1RZSA 2IV1A 4EQZA 1RZRA 4FBIA 4JCYA 1QQAA 2B5AA 3S8QA 2ODRD 1Y9QA 3GBFA 2PPXA 2KEIA 2EF8A 4I6UA 1XWRA 2MXDA 3UWPA 1PRAA 4O8BA 2LYPA 2D5VA 2J7WA 4EKIA 2GRMA 3QOWA
chains in the Genus database with same CATH topology
2FFHA 1DULA 5GAHi 2PXLA 3NDBB 1QZXA 3LQXA 1HQ1A 2PXQA 5GAGi 2PXEA 2PXTA 2PXUA 2XXAA 1MFQC 2PXDA 2V3CC 2PXVA 3DM5A 3KL4A 1QB2A 2PXKA 2PXPA 2PXFA 2PXBA 2JQEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FFH A;  1DUL A;  5GAH i;  2PXL A;  3NDB B;  1QZX A;  3LQX A;  1HQ1 A;  2PXQ A;  5GAG i;  2PXE A;  2PXT A;  2PXU A;  2XXA A;  1MFQ C;  2PXD A;  2V3C C;  2PXV A;  3DM5 A;  3KL4 A;  1QB2 A;  2PXK A;  2PXP A;  2PXF A;  2PXB A;  2JQE A; 
#chains in the Genus database with same CATH topology
 4ER3 A;  1QP0 A;  3H5T A;  2PUF A;  2PXL A;  2KEK A;  5DRY A;  2IVG A;  5JUW A;  2PXQ A;  3FYA A;  2BNO A;  2LLW A;  3KXA A;  3QOX A;  3R1F A;  2HSG A;  2PXU A;  1WH6 A;  3SCH A;  3FMY A;  4DE8 A;  1E3O C;  2R63 A;  3JXB C;  2PUB A;  4MCX A;  3F52 A;  3IVP A;  1PNR A;  2ICP A;  2HIN A;  4OB4 A;  1DUL A;  4ER6 A;  2KZ8 A;  4EZI A;  5DTQ A;  3ZKC A;  1HQ1 A;  4WVL A;  2LNM A;  3F51 A;  2AW6 A;  4J1X A;  4GQM A;  3NRO A;  4FN3 A;  2IU7 A;  3JXD L;  3PXP A;  3QWG A;  4I8T A;  1ZS4 A;  2PUC A;  2KPJ A;  2IUO A;  4X4G A;  2AWI A;  5A7L A;  2LCV A;  3LQX A;  5DTR A;  2XI8 A;  4EKG A;  2AXU A;  2PXD A;  4GHJ A;  3CRO L;  1EFA A;  3UFD A;  3ME5 A;  1X2L A;  3GZC A;  2PXB A;  2LYR A;  4YBA A;  5DRT A;  1PER L;  2YBD A;  2OFY A;  3SR4 A;  2AUW A;  4JQD A;  1ZZC A;  4MCT A;  2LYL A;  2MEZ A;  4I6R A;  3BDN A;  1BDI A;  3SX0 A;  3MLF A;  2V3C C;  2BNM A;  2H8R A;  3MEJ A;  2GRL A;  4HRA A;  3EUS A;  1LMB 3;  4X4F A;  1BDH A;  1AU7 A;  2PUD A;  1ZAY A;  3U3W A;  1DW9 A;  3SCF A;  2BJC A;  2IVB A;  2LYQ A;  1ZPQ A;  5K98 B;  4OBM A;  4X4D A;  3G7D A;  1ZZ7 A;  3GUU A;  2CSF A;  3L1P A;  3GZD C;  1JFS A;  1MFQ C;  2PUA A;  1ZZ6 A;  3KZ3 A;  2LYK A;  2IVQ A;  3TEL A;  4Q2J A;  2JQE A;  4Z5D A;  1VPW A;  1ZUG A;  3TEP A;  2WUS R;  1SQ8 A;  4X4H A;  3NDB B;  3JXC L;  4J1W A;  2JCG A;  3G5G A;  3VK0 A;  1YSE A;  3NZL A;  3TFL A;  3R09 A;  2O38 A;  2XJ3 A;  1B0N A;  1NER A;  3CLC A;  4PU4 C;  4Y42 A;  3NXH A;  3HZI B;  3QFI A;  3VWS A;  2O4A A;  2VEO A;  1LCC A;  1NW3 A;  1GT0 C;  3BD1 A;  3OKZ A;  2LYS A;  4ER0 A;  4X4B A;  3A9Z A;  2L49 A;  1UTX A;  2R1J L;  4DE9 A;  4Z5C A;  1LLI A;  2PXE A;  2XXP A;  2PIJ A;  1Y7Y A;  4X4C A;  4Z59 A;  1OSL A;  3KL4 A;  1R69 A;  4F8D A;  3ZPX A;  1POU A;  3LIS A;  2FFH A;  2GZU A;  1UXC A;  4JCX A;  5GAG i;  4X4I A;  3OP9 A;  3A9Y A;  4IVZ A;  1QQB A;  2PE5 A;  1OCT C;  2FJR A;  3TRB A;  4PU3 C;  2XXQ A;  2OR1 L;  2L1P A;  1PRU A;  1R63 A;  1QB2 A;  2HCN A;  1O4X A;  3OQM A;  1ZVV A;  3KJX A;  4EK9 A;  1QZX A;  1NEQ A;  1ZZB A;  2XCJ A;  1X57 A;  4ER7 A;  1U2Z A;  3OQO A;  1RZR D;  4YAR A;  2HCS A;  3B7H A;  4I6T A;  1JH9 A;  1QP7 A;  5DSX A;  3QF3 A;  2PXV A;  1ADR A;  3RZZ A;  2XIU A;  4X4E A;  3ZHM A;  2EWT A;  3OMT A;  4IA8 A;  3GN5 A;  2MQK A;  3G0T A;  1RPE L;  2HFZ A;  4ER5 A;  2M4H A;  2CRO A;  1LQC A;  2XXA A;  2LYJ A;  1JFT A;  3A9X A;  4NDW A;  4YG7 B;  5DT2 A;  3GN5 B;  2KEJ A;  1UXD A;  1QPZ A;  1ZZ8 A;  3ZHI A;  4PU8 A;  2J7U A;  2PUE A;  2BNN A;  2XSD C;  2JVL A;  3OWQ A;  4YG1 A;  2AXV A;  4Z58 A;  2L8N A;  1WIZ A;  3DM5 A;  3F6W A;  2LLV A;  2AXZ A;  2ICT A;  1HF0 A;  2PXK A;  2O49 A;  2PXF A;  3OQN A;  1PRV A;  1L1M A;  5DTM A;  1WH8 A;  4IWR A;  5GAH i;  3GZD A;  3M9L A;  4PU7 A;  3CEC A;  3BS3 A;  3LFP A;  3DNV B;  1IC8 A;  1JWL A;  2PXT A;  4Z5H A;  2PUG A;  3QQ6 A;  3D1N I;  1DWK A;  4YG4 A;  3O9X A;  2WIU B;  3SCG A;  3QYX A;  1LCD A;  2EBY A;  2A6C A;  1RIO A;  3PE5 A;  1CJG A;  1CQT A;  1QP4 A;  1S7E A;  1ZZ9 A;  3FYM A;  2PXP A;  1WET A;  1RZS A;  2IV1 A;  4EQZ A;  1RZR A;  4FBI A;  4JCY A;  1QQA A;  2B5A A;  3S8Q A;  2ODR D;  1Y9Q A;  3GBF A;  2PPX A;  2KEI A;  2EF8 A;  4I6U A;  1XWR A;  2MXD A;  3UWP A;  1PRA A;  4O8B A;  2LYP A;  2D5V A;  2J7W A;  4EKI A;  2GRM A;  3QOW A; 
#chains in the Genus database with same CATH homology
 2FFH A;  1DUL A;  5GAH i;  2PXL A;  3NDB B;  1QZX A;  3LQX A;  1HQ1 A;  2PXQ A;  5GAG i;  2PXE A;  2PXT A;  2PXU A;  2XXA A;  1MFQ C;  2PXD A;  2V3C C;  2PXV A;  3DM5 A;  3KL4 A;  1QB2 A;  2PXK A;  2PXP A;  2PXF A;  2PXB A;  2JQE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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