3LVYA

Crystal structure of carboxymuconolactone decarboxylase family protein smu.961 from streptococcus mutans
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
184
structure length
184
Chain Sequence
b'MSKFTIHTIETAPERVKETLRTVKKDNGGYIPNLIGLLANAPTALETYRTVGEINRRNSLTPTEREVVQITAAVTNGCAFCVAGHTAFSIKQIQMAPDLLEALRNATPIDDDPKLDTLAKFTIAVINTKGRVGDEAFADFLEVGYTPENALDVVLGVSLASLCNYANNMADTPINPELQQYVKG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Carboxymuconolactone decarboxylase family
publication title Crystal Structure of Carboxymuconolactone Decarboxylase Family Protein SMU.961 from Streptococcus mutans
rcsb
source organism Streptococcus mutans
molecule tags Lyase
total genus 70
structure length 184
sequence length 184
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2010-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3lvyA01
2PRRA 2IJCA 1VKEA 3C1LA 2O4DA 4G9QA 3D7IA 2OUWA 1ME5A 2QEUA 5DIPA 2CWQA 2AF7A 1KNCA 2GMYA 1P8CA 1GU9A 3BEYA 2PFXA 2Q0TA 5DIKA 1LW1A 3LVYA 2OYOA
chains in the Genus database with same CATH superfamily
2PRRA 2IJCA 3AA6A 1VKEA 3LK41 3C1LA 2O4DA 4G9QA 1IZNA 2KXPA 3D7IA 3AAEA 2OUWA 1ME5A 2QEUA 5DIPA 5ADXK 2CWQA 2JN8A 2AF7A 1KNCA 2KZ7A 5AFUK 2GMYA 1P8CA 3LK3A 1GU9A 3AAAA 3BEYA 3AA1A 4AKRA 3LK2A 2PFXA 2Q0TA 5DIKA 1LW1A 2ES9A 3AA7A 3AA0A 3LVYA 2OYOA
chains in the Genus database with same CATH topology
2PRRA 2IJCA 3AA6A 1VKEA 3LK41 3C1LA 2O4DA 4G9QA 1IZNA 2KXPA 3D7IA 3AAEA 2OUWA 1ME5A 2QEUA 5DIPA 5ADXK 2CWQA 2JN8A 2AF7A 1KNCA 2KZ7A 5AFUK 2GMYA 1P8CA 3LK3A 1GU9A 3AAAA 3BEYA 3AA1A 4AKRA 3LK2A 2PFXA 2Q0TA 5DIKA 1LW1A 2ES9A 3AA7A 3AA0A 3LVYA 2OYOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PRR A;  2IJC A;  1VKE A;  3C1L A;  2O4D A;  4G9Q A;  3D7I A;  2OUW A;  1ME5 A;  2QEU A;  5DIP A;  2CWQ A;  2AF7 A;  1KNC A;  2GMY A;  1P8C A;  1GU9 A;  3BEY A;  2PFX A;  2Q0T A;  5DIK A;  1LW1 A;  3LVY A;  2OYO A; 
#chains in the Genus database with same CATH topology
 2PRR A;  2IJC A;  3AA6 A;  1VKE A;  3LK4 1;  3C1L A;  2O4D A;  4G9Q A;  1IZN A;  2KXP A;  3D7I A;  3AAE A;  2OUW A;  1ME5 A;  2QEU A;  5DIP A;  5ADX K;  2CWQ A;  2JN8 A;  2AF7 A;  1KNC A;  2KZ7 A;  5AFU K;  2GMY A;  1P8C A;  3LK3 A;  1GU9 A;  3AAA A;  3BEY A;  3AA1 A;  4AKR A;  3LK2 A;  2PFX A;  2Q0T A;  5DIK A;  1LW1 A;  2ES9 A;  3AA7 A;  3AA0 A;  3LVY A;  2OYO A; 
#chains in the Genus database with same CATH homology
 2PRR A;  2IJC A;  3AA6 A;  1VKE A;  3LK4 1;  3C1L A;  2O4D A;  4G9Q A;  1IZN A;  2KXP A;  3D7I A;  3AAE A;  2OUW A;  1ME5 A;  2QEU A;  5DIP A;  5ADX K;  2CWQ A;  2JN8 A;  2AF7 A;  1KNC A;  2KZ7 A;  5AFU K;  2GMY A;  1P8C A;  3LK3 A;  1GU9 A;  3AAA A;  3BEY A;  3AA1 A;  4AKR A;  3LK2 A;  2PFX A;  2Q0T A;  5DIK A;  1LW1 A;  2ES9 A;  3AA7 A;  3AA0 A;  3LVY A;  2OYO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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