3LVYA

Crystal structure of carboxymuconolactone decarboxylase family protein smu.961 from streptococcus mutans
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
184
structure length
184
Chain Sequence
MSKFTIHTIETAPERVKETLRTVKKDNGGYIPNLIGLLANAPTALETYRTVGEINRRNSLTPTEREVVQITAAVTNGCAFCVAGHTAFSIKQIQMAPDLLEALRNATPIDDDPKLDTLAKFTIAVINTKGRVGDEAFADFLEVGYTPENALDVVLGVSLASLCNYANNMADTPINPELQQYVKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Carboxymuconolactone decarboxylase family
publication title Crystal Structure of Carboxymuconolactone Decarboxylase Family Protein SMU.961 from Streptococcus mutans
rcsb
source organism Streptococcus mutans
molecule tags Lyase
total genus 70
structure length 184
sequence length 184
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2010-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3lvyA01
2O4DA 1P8CA 2GMYA 1KNCA 2Q0TA 2OUWA 2CWQA 1LW1A 1GU9A 2AF7A 1VKEA 3D7IA 2OYOA 2PFXA 2QEUA 2PRRA 3LVYA 4G9QA 3C1LA 1ME5A 3BEYA 5DIKA 2IJCA 5DIPA
chains in the Genus database with same CATH superfamily
2O4DA 5ADXK 1P8CA 3AAAA 3AA7A 2GMYA 1KNCA 2Q0TA 3AA6A 2OUWA 3LK3A 2CWQA 3LK41 1LW1A 3AA0A 3LK2A 1GU9A 2KZ7A 2AF7A 1VKEA 3D7IA 2OYOA 2PFXA 4AKRA 2QEUA 2PRRA 2KXPA 3LVYA 4G9QA 2JN8A 5AFUK 3AA1A 3C1LA 3AAEA 1ME5A 1IZNA 2ES9A 3BEYA 5DIKA 2IJCA 5DIPA
chains in the Genus database with same CATH topology
2O4DA 5ADXK 1P8CA 3AAAA 3AA7A 2GMYA 1KNCA 2Q0TA 3AA6A 2OUWA 3LK3A 2CWQA 3LK41 1LW1A 3AA0A 3LK2A 1GU9A 2KZ7A 2AF7A 1VKEA 3D7IA 2OYOA 2PFXA 4AKRA 2QEUA 2PRRA 2KXPA 3LVYA 4G9QA 2JN8A 5AFUK 3AA1A 3C1LA 3AAEA 1ME5A 1IZNA 2ES9A 3BEYA 5DIKA 2IJCA 5DIPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O4D A;  1P8C A;  2GMY A;  1KNC A;  2Q0T A;  2OUW A;  2CWQ A;  1LW1 A;  1GU9 A;  2AF7 A;  1VKE A;  3D7I A;  2OYO A;  2PFX A;  2QEU A;  2PRR A;  3LVY A;  4G9Q A;  3C1L A;  1ME5 A;  3BEY A;  5DIK A;  2IJC A;  5DIP A; 
#chains in the Genus database with same CATH topology
 2O4D A;  5ADX K;  1P8C A;  3AAA A;  3AA7 A;  2GMY A;  1KNC A;  2Q0T A;  3AA6 A;  2OUW A;  3LK3 A;  2CWQ A;  3LK4 1;  1LW1 A;  3AA0 A;  3LK2 A;  1GU9 A;  2KZ7 A;  2AF7 A;  1VKE A;  3D7I A;  2OYO A;  2PFX A;  4AKR A;  2QEU A;  2PRR A;  2KXP A;  3LVY A;  4G9Q A;  2JN8 A;  5AFU K;  3AA1 A;  3C1L A;  3AAE A;  1ME5 A;  1IZN A;  2ES9 A;  3BEY A;  5DIK A;  2IJC A;  5DIP A; 
#chains in the Genus database with same CATH homology
 2O4D A;  5ADX K;  1P8C A;  3AAA A;  3AA7 A;  2GMY A;  1KNC A;  2Q0T A;  3AA6 A;  2OUW A;  3LK3 A;  2CWQ A;  3LK4 1;  1LW1 A;  3AA0 A;  3LK2 A;  1GU9 A;  2KZ7 A;  2AF7 A;  1VKE A;  3D7I A;  2OYO A;  2PFX A;  4AKR A;  2QEU A;  2PRR A;  2KXP A;  3LVY A;  4G9Q A;  2JN8 A;  5AFU K;  3AA1 A;  3C1L A;  3AAE A;  1ME5 A;  1IZN A;  2ES9 A;  3BEY A;  5DIK A;  2IJC A;  5DIP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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