3LW5K

Improved model of plant photosystem i
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
84
structure length
84
Chain Sequence
DFIGSPTNLIMVTSTSLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGVVGHIIGVGVVLGLKNIGAL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Photosynthesis
molecule keywords Photosystem I P700 chlorophyll a apoprotein A1
publication title Structure determination and improved model of plant photosystem I
pubmed doi rcsb
total genus 16
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 2010-02-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF01241 PSI_PSAK Photosystem I psaG / psaK
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.40 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 Chlorophyll a-b binding protein like 3lw5K00
3LW5G 2WSCK 2WSCG 2O01G 2WSEK 2WSEG 2WSFK 2WSFG 3LW5K
chains in the Genus database with same CATH superfamily
2PN0A 3BMBA 4NE5B 1N3TA 4JA3A 4DRBJ 1AIPC 2LNZA 1GTPA 2O01G 5DMZA 3VEJA 2WSEK 1IS8A 2WSEG 4Q7JA 1N3RA 1A9CA 3LW5K 3LW5G 3B0BC 2LO0A 2P11A 1A8RA 1EL6A 4QPMA 1WM9A 2KR1A 2WSFK 2WSFG 1FBXA 1WUQA 1IS7A 1N3SA 4E45B 4R8QA 4NE3B 1FB1A 4DRAE 1WPLA 1WURA 2WSCK 2WSCG 1EFUB 1TFEA 4E44B 4DU6A 4NE6B
chains in the Genus database with same CATH topology
3LW5G 2WSCK 2WSCG 2O01G 2WSEK 2WSEG 2WSFK 2WSFG 3LW5K
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LW5 G;  2WSC K;  2WSC G;  2O01 G;  2WSE K;  2WSE G;  2WSF K;  2WSF G;  3LW5 K; 
#chains in the Genus database with same CATH topology
 2PN0 A;  3BMB A;  4NE5 B;  1N3T A;  4JA3 A;  4DRB J;  1AIP C;  2LNZ A;  1GTP A;  2O01 G;  5DMZ A;  3VEJ A;  2WSE K;  1IS8 A;  2WSE G;  4Q7J A;  1N3R A;  1A9C A;  3LW5 K;  3LW5 G;  3B0B C;  2LO0 A;  2P11 A;  1A8R A;  1EL6 A;  4QPM A;  1WM9 A;  2KR1 A;  2WSF K;  2WSF G;  1FBX A;  1WUQ A;  1IS7 A;  1N3S A;  4E45 B;  4R8Q A;  4NE3 B;  1FB1 A;  4DRA E;  1WPL A;  1WUR A;  2WSC K;  2WSC G;  1EFU B;  1TFE A;  4E44 B;  4DU6 A;  4NE6 B; 
#chains in the Genus database with same CATH homology
 3LW5 G;  2WSC K;  2WSC G;  2O01 G;  2WSE K;  2WSE G;  2WSF K;  2WSF G;  3LW5 K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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