3LWKA

Crystal structure of human beta-crystallin a4 (cryba4)
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
191
structure length
182
Chain Sequence
SMSAGPWKMVVWDEDGFQGRRHEFTAECPSVLELGFETVRSLKVLSGAWVGFEHAGFQGQQYILERGEYPSWDAWGGAERLTSFRPAACANHRDSRLTIFEQENFLGKKGELSDDYPSLQAMGWEGNEVGSFHVHSGAWVCSQFPGYRGFQYVLECDHHSGDYKHFREWPTFQVQSIRRIQQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Beta-crystallin A4
publication title Crystal structure of human Beta-crystallin A4 (CRYBA4)
rcsb
source organism Homo sapiens
total genus 48
structure length 182
sequence length 191
ec nomenclature
pdb deposition date 2010-02-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 3lwkA01
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 3lwkA02
3SNYA 1ZIEA 3HZBA 2K1XA 4W9BA 3ENUA 4PSPA 1BD7A 3HZ2A 1GCSA 1HDFA 4JGFA 4PSRA 2V2UA 1I5IA 2M3UA 1ZWMA 3SO0A 4W9AA 1OKIA 1A5DA 1BLBA 2G98A 4GR7A 1NPSA 4EL6A 1ZGTA 2DADA 1YHPA 2M3TA 3IAJA 3SO1A 2BB2A 4IAUA 1E7NA 1PRSA 1ELPA 1HK0X 2KP5A 3ENTA 4FD9A 4GCRA 1A7HA 1ZWOA 1AG4A 3QK3A 1M8UA 5HT9A 4NI3A 2K1WA 1A45A 1ZIRA 1ZIQA 3LWKA 1PRRA 2A5MA 5HT8A 1YTQA 1HA4A 3CW3A 1GAMA 1AMMA 2JDGA 2M3CA 1H4AX 2JDFA 2B1OA 1DSLA 2NBRA 4AKAA 2KFBA 3SNZA 2BV2A 3I9HA
chains in the Genus database with same CATH superfamily
3HZBA 2K1XA 4W9BA 3ENUA 1HDFA 2V2UA 2M3UA 1ZWMA 4EL6A 1YHPA 1WKTA 3UJZA 1PRSA 4FD9A 2KP5A 5HT9A 2K1WA 1A45A 2A5MA 1AMMA 2JDGA 2JDFA 1DSLA 1GH5A 3SNZA 2DADA 3SNYA 1OKIA 1NPSA 3IAJA 2BB2A 1E7NA 1ZWOA 3LWKA 5HT8A 2M3CA 1H4AX 2B1OA 2NBRA 4AKAA 1F53A 4W9AA 1BD7A 3HZ2A 4PSRA 1I5IA 1G6EA 1C01A 4IAUA 1HK0X 3ENTA 1A7HA 1AG4A 1ZIQA 1BHUA 1YTQA 1GAMA 2KFBA 2BV2A 3I9HA 1ZIEA 4PSPA 1GCSA 4JGFA 3SO0A 1A5DA 1BLBA 2G98A 4GR7A 1ZGTA 2M3TA 3SO1A 1ELPA 4GCRA 3QK3A 1M8UA 4NI3A 1ZIRA 1PRRA 1HA4A 3CW3A
chains in the Genus database with same CATH topology
3SNYA 1ZIEA 3HZBA 2K1XA 4W9BA 3ENUA 4PSPA 1BD7A 3HZ2A 1GCSA 1HDFA 4JGFA 4PSRA 2V2UA 1I5IA 2M3UA 1ZWMA 3SO0A 4W9AA 1OKIA 1A5DA 1BLBA 2G98A 4GR7A 1NPSA 4EL6A 1ZGTA 2DADA 1YHPA 2M3TA 3IAJA 3SO1A 2BB2A 4IAUA 1E7NA 1PRSA 1ELPA 1HK0X 2KP5A 3ENTA 4FD9A 4GCRA 1A7HA 1ZWOA 1AG4A 3QK3A 1M8UA 5HT9A 4NI3A 2K1WA 1A45A 1ZIRA 1ZIQA 3LWKA 1PRRA 2A5MA 5HT8A 1YTQA 1HA4A 3CW3A 1GAMA 1AMMA 2JDGA 2M3CA 1H4AX 2JDFA 2B1OA 1DSLA 2NBRA 4AKAA 2KFBA 3SNZA 2BV2A 3I9HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SNY A;  1ZIE A;  3HZB A;  2K1X A;  4W9B A;  3ENU A;  4PSP A;  1BD7 A;  3HZ2 A;  1GCS A;  1HDF A;  4JGF A;  4PSR A;  2V2U A;  1I5I A;  2M3U A;  1ZWM A;  3SO0 A;  4W9A A;  1OKI A;  1A5D A;  1BLB A;  2G98 A;  4GR7 A;  1NPS A;  4EL6 A;  1ZGT A;  2DAD A;  1YHP A;  2M3T A;  3IAJ A;  3SO1 A;  2BB2 A;  4IAU A;  1E7N A;  1PRS A;  1ELP A;  1HK0 X;  2KP5 A;  3ENT A;  4FD9 A;  4GCR A;  1A7H A;  1ZWO A;  1AG4 A;  3QK3 A;  1M8U A;  5HT9 A;  4NI3 A;  2K1W A;  1A45 A;  1ZIR A;  1ZIQ A;  3LWK A;  1PRR A;  2A5M A;  5HT8 A;  1YTQ A;  1HA4 A;  3CW3 A;  1GAM A;  1AMM A;  2JDG A;  2M3C A;  1H4A X;  2JDF A;  2B1O A;  1DSL A;  2NBR A;  4AKA A;  2KFB A;  3SNZ A;  2BV2 A;  3I9H A; 
#chains in the Genus database with same CATH topology
 3HZB A;  2K1X A;  4W9B A;  3ENU A;  1HDF A;  2V2U A;  2M3U A;  1ZWM A;  4EL6 A;  1YHP A;  1WKT A;  3UJZ A;  1PRS A;  4FD9 A;  2KP5 A;  5HT9 A;  2K1W A;  1A45 A;  2A5M A;  1AMM A;  2JDG A;  2JDF A;  1DSL A;  1GH5 A;  3SNZ A;  2DAD A;  3SNY A;  1OKI A;  1NPS A;  3IAJ A;  2BB2 A;  1E7N A;  1ZWO A;  3LWK A;  5HT8 A;  2M3C A;  1H4A X;  2B1O A;  2NBR A;  4AKA A;  1F53 A;  4W9A A;  1BD7 A;  3HZ2 A;  4PSR A;  1I5I A;  1G6E A;  1C01 A;  4IAU A;  1HK0 X;  3ENT A;  1A7H A;  1AG4 A;  1ZIQ A;  1BHU A;  1YTQ A;  1GAM A;  2KFB A;  2BV2 A;  3I9H A;  1ZIE A;  4PSP A;  1GCS A;  4JGF A;  3SO0 A;  1A5D A;  1BLB A;  2G98 A;  4GR7 A;  1ZGT A;  2M3T A;  3SO1 A;  1ELP A;  4GCR A;  3QK3 A;  1M8U A;  4NI3 A;  1ZIR A;  1PRR A;  1HA4 A;  3CW3 A; 
#chains in the Genus database with same CATH homology
 3SNY A;  1ZIE A;  3HZB A;  2K1X A;  4W9B A;  3ENU A;  4PSP A;  1BD7 A;  3HZ2 A;  1GCS A;  1HDF A;  4JGF A;  4PSR A;  2V2U A;  1I5I A;  2M3U A;  1ZWM A;  3SO0 A;  4W9A A;  1OKI A;  1A5D A;  1BLB A;  2G98 A;  4GR7 A;  1NPS A;  4EL6 A;  1ZGT A;  2DAD A;  1YHP A;  2M3T A;  3IAJ A;  3SO1 A;  2BB2 A;  4IAU A;  1E7N A;  1PRS A;  1ELP A;  1HK0 X;  2KP5 A;  3ENT A;  4FD9 A;  4GCR A;  1A7H A;  1ZWO A;  1AG4 A;  3QK3 A;  1M8U A;  5HT9 A;  4NI3 A;  2K1W A;  1A45 A;  1ZIR A;  1ZIQ A;  3LWK A;  1PRR A;  2A5M A;  5HT8 A;  1YTQ A;  1HA4 A;  3CW3 A;  1GAM A;  1AMM A;  2JDG A;  2M3C A;  1H4A X;  2JDF A;  2B1O A;  1DSL A;  2NBR A;  4AKA A;  2KFB A;  3SNZ A;  2BV2 A;  3I9H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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