3LWQA

Structure of h/aca rnp bound to a substrate rna containing 3mu
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
326
structure length
316
Chain Sequence
ILPADIKREVLIKDENAETNPDWGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRLRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDVEKVFMPRDWYPKLW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase/rna binding protein/rna
molecule keywords Pseudouridine synthase Cbf5
publication title Functional and Structural Impact of Target Uridine Substitutions on the H/ACA Ribonucleoprotein Particle Pseudouridine Synthase .
pubmed doi rcsb
source organism Pyrococcus furiosus
total genus 92
structure length 316
sequence length 326
ec nomenclature ec 5.4.99.25: tRNA pseudouridine(55) synthase.
pdb deposition date 2010-02-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01472 PUA PUA domain
A PF01509 TruB_N TruB family pseudouridylate synthase (N terminal domain)
A PF08068 DKCLD DKCLD (NUC011) domain
A PF16198 TruB_C_2 tRNA pseudouridylate synthase B C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.70 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 3lwqA01
3.30.2350.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 3lwqA02
2EY4A 1KSVA 3LWOA 3ZV0C 1QYUA 1ZE1A 1KSLA 1V9FA 2RFKA 2ISTA 3DH3A 3U28A 2I82A 1SGVA 3LWVA 1ZL3A 3LWRA 4LGTA 2HVYA 3UAIA 4LABA 3HJWA 2AUSA 2APOA 2AB4A 3HAXA 3LWPA 1R3EA 1KSKA 1K8WA 1ZE2A 3LWQA 3HJYA 1PRZA 3MQKA 1XPIA 1V9KA 1R3FA
chains in the Genus database with same CATH superfamily
2CWWA 3ZV0C 1IT7A 1ZE1A 3C0KA 1T5YA 1KSLA 3M4XA 2J5VA 2ISTA 3IUWA 2I82A 1ZL3A 3UAIA 3VSEA 2AS0A 1ZS7A 1J2BA 3HJYA 1WXXA 1WXWA 3M6VA 2FRXA 1Z2ZA 1V9FA 2RFKA 3M6XA 1UOYA 4TZ4C 3LWVA 3LWRA 1ZBOA 2KKUA 1WK2A 3HAXA 4DMGA 1Q7HA 2DP9A 1ZE2A 3LWQA 3M65A 4CI3B 3MQKA 1SZWA 2J5TA 1V9KA 3M6UA 4LGTA 3LDFA 3LWOA 1IT8A 3LJCA 2CX0A 3U28A 1SB7A 2E5OA 2AUSA 2CX1A 2AB4A 2Z0TA 3LWPA 1R3EA 1K8WA 1KSKA 3M6WA 1XPIA 1S04A 2EY4A 1KSVA 1QYUA 1SI7A 2B78A 3DH3A 1SGVA 1SQWA 4Q1TA 1XNEA 2HVYA 1TE7A 2Q07A 4LABA 3HJWA 2APOA 2ANEA 1IQ8A 1PRZA 2P38A 3D79A 4CI2B 4CI1B 1R3FA
chains in the Genus database with same CATH topology
2EY4A 1KSVA 3LWOA 3ZV0C 1QYUA 3M6VA 1SI7A 1ZE1A 2FRXA 1KSLA 3M4XA 1Z2ZA 1V9FA 2RFKA 2ISTA 3DH3A 3M6XA 3U28A 2I82A 1SGVA 1UOYA 3LWVA 1R3FA 1ZL3A 3LWRA 4LGTA 2HVYA 1SB7A 3UAIA 4LABA 3HJWA 2AUSA 2APOA 2AB4A 3HAXA 3LWPA 1R3EA 1KSKA 1K8WA 1ZE2A 3LWQA 3M6WA 3HJYA 1PRZA 3MQKA 1SZWA 1XPIA 1V9KA 3M6UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EY4 A;  1KSV A;  3LWO A;  3ZV0 C;  1QYU A;  1ZE1 A;  1KSL A;  1V9F A;  2RFK A;  2IST A;  3DH3 A;  3U28 A;  2I82 A;  1SGV A;  3LWV A;  1ZL3 A;  3LWR A;  4LGT A;  2HVY A;  3UAI A;  4LAB A;  3HJW A;  2AUS A;  2APO A;  2AB4 A;  3HAX A;  3LWP A;  1R3E A;  1KSK A;  1K8W A;  1ZE2 A;  3LWQ A;  3HJY A;  1PRZ A;  3MQK A;  1XPI A;  1V9K A;  1R3F A; 
#chains in the Genus database with same CATH topology
 2CWW A;  3ZV0 C;  1IT7 A;  1ZE1 A;  3C0K A;  1T5Y A;  1KSL A;  3M4X A;  2J5V A;  2IST A;  3IUW A;  2I82 A;  1ZL3 A;  3UAI A;  3VSE A;  2AS0 A;  1ZS7 A;  1J2B A;  3HJY A;  1WXX A;  1WXW A;  3M6V A;  2FRX A;  1Z2Z A;  1V9F A;  2RFK A;  3M6X A;  1UOY A;  4TZ4 C;  3LWV A;  3LWR A;  1ZBO A;  2KKU A;  1WK2 A;  3HAX A;  4DMG A;  1Q7H A;  2DP9 A;  1ZE2 A;  3LWQ A;  3M65 A;  4CI3 B;  3MQK A;  1SZW A;  2J5T A;  1V9K A;  3M6U A;  4LGT A;  3LDF A;  3LWO A;  1IT8 A;  3LJC A;  2CX0 A;  3U28 A;  1SB7 A;  2E5O A;  2AUS A;  2CX1 A;  2AB4 A;  2Z0T A;  3LWP A;  1R3E A;  1K8W A;  1KSK A;  3M6W A;  1XPI A;  1S04 A;  2EY4 A;  1KSV A;  1QYU A;  1SI7 A;  2B78 A;  3DH3 A;  1SGV A;  1SQW A;  4Q1T A;  1XNE A;  2HVY A;  1TE7 A;  2Q07 A;  4LAB A;  3HJW A;  2APO A;  2ANE A;  1IQ8 A;  1PRZ A;  2P38 A;  3D79 A;  4CI2 B;  4CI1 B;  1R3F A; 
#chains in the Genus database with same CATH homology
 2EY4 A;  1KSV A;  3LWO A;  3ZV0 C;  1QYU A;  3M6V A;  1SI7 A;  1ZE1 A;  2FRX A;  1KSL A;  3M4X A;  1Z2Z A;  1V9F A;  2RFK A;  2IST A;  3DH3 A;  3M6X A;  3U28 A;  2I82 A;  1SGV A;  1UOY A;  3LWV A;  1R3F A;  1ZL3 A;  3LWR A;  4LGT A;  2HVY A;  1SB7 A;  3UAI A;  4LAB A;  3HJW A;  2AUS A;  2APO A;  2AB4 A;  3HAX A;  3LWP A;  1R3E A;  1KSK A;  1K8W A;  1ZE2 A;  3LWQ A;  3M6W A;  3HJY A;  1PRZ A;  3MQK A;  1SZW A;  1XPI A;  1V9K A;  3M6U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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