3LX2A

Crystal structure analysis of pcna from thermococcus kodakaraensis tk0582
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
247
structure length
247
Chain Sequence
TFEIVFDSAREFESLIATLEKFFDEAVFQVNMEGIQMRAIDPSRVVLVDLNLPEMLFSKYSVESEEAIAFDLKRFLKVLKLARSRDTLVLRKGGENFLEVGLLGDENTWFKLPLIDANTPEIEIPSLPWTVKAVVLAGALKRAVKAAKLVSDSIYFMATPEKLTFKAEGNDSEVRTVLTMEDPGLLDLEHKMTKAKSAYGVAYLEDILRSLADADEVIIRFGFDIPLLLKYMVRDAGEVSFLIAPRV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structures of two active proliferating cell nuclear antigens (PCNAs) encoded by Thermococcus kodakaraensis.
pubmed doi rcsb
molecule keywords DNA polymerase sliding clamp 2
molecule tags Dna binding protein
source organism Thermococcus kodakarensis
total genus 55
structure length 247
sequence length 247
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2010-02-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3lx2A00
5JNED 2IZOB 4TR6A 1W60A 5AUJA 1PLQA 3A1JB 5B7OA 1YYPA 2HIIC 2ZVVA 2IO4A 4D2GA 5DA7A 3AIXB 3I2MX 1UL1A 2ZVLA 2NTIA 1ISQA 3G65B 2IX2C 5IY4A 3HSLX 4ZTDA 4YHRA 4HK1A 2HIIB 2ZVMA 1T6LA 1CZDA 2AWAA 3V62B 1SXJF 1B77A 3F1WA 5H0TA 5E0VA 2ZVWA 5IXAA 3A2FB 4L60A 3AIZC 5IWDA 2HIKA 3G65C 1VYMA 5CFKA 2Z0LA 3GGRA 1B8HA 5DAIA 4L6PA 3K4XA 3WGWA 1IZ4A 2NTIB 3U61F 1RWZA 4CS5A 2OD8A 3GPMA 3LX1A 2IX2A 2ZVKA 4RJFA 3V61B 1IZ5A 3GPNA 3P83A 2HIKB 1U7BA 2NTIC 1U76A 3A1JA 3GGRB 3U60F 2IO4B 3AIZA 3FDSC 5E0UA 3AIXA 3G65A 3FDSD 1GE8A 2HIIA 5A6DA 3P87A 3V60B 3HI8A 3U5ZF 1DMLA 1UD9A 2HIKC 2IJXA 3IFVA 1AXCA 3GGRC 5HACA 3TBLA 3VKXA 2IX2B 2AVTA 1RXMA 2IZOC 3P91A 1PLRA 5E0TA 3A1JC 3LX2A 1VYJA 1RXZA
chains in the Genus database with same CATH superfamily
5JNED 2IZOB 4TR6A 1W60A 5AUJA 1PLQA 3A1JB 5B7OA 1YYPA 2HIIC 2ZVVA 2IO4A 4D2GA 5DA7A 3AIXB 3I2MX 1UL1A 2ZVLA 2NTIA 1ISQA 3G65B 2IX2C 5IY4A 3HSLX 4ZTDA 4YHRA 4HK1A 2HIIB 2ZVMA 1T6LA 1CZDA 2AWAA 3V62B 1SXJF 1B77A 3F1WA 5H0TA 5E0VA 2ZVWA 5IXAA 3A2FB 4L60A 3AIZC 5IWDA 2HIKA 3G65C 1VYMA 5CFKA 2Z0LA 3GGRA 1B8HA 5DAIA 4L6PA 3K4XA 3WGWA 1IZ4A 2NTIB 3U61F 1RWZA 4CS5A 2OD8A 3GPMA 3LX1A 2IX2A 2ZVKA 4RJFA 3V61B 1IZ5A 3GPNA 3P83A 2HIKB 1U7BA 2NTIC 1U76A 3A1JA 3GGRB 3U60F 2IO4B 3AIZA 3FDSC 5E0UA 3AIXA 3G65A 3FDSD 1GE8A 2HIIA 5A6DA 3P87A 3V60B 3HI8A 3U5ZF 1DMLA 1UD9A 2HIKC 2IJXA 3IFVA 1AXCA 3GGRC 5HACA 3TBLA 3VKXA 2IX2B 2AVTA 1RXMA 2IZOC 3P91A 1PLRA 5E0TA 3A1JC 3LX2A 1VYJA 1RXZA
chains in the Genus database with same CATH topology
5JNED 2IZOB 4TR6A 1W60A 5AUJA 1PLQA 3A1JB 5B7OA 1YYPA 2HIIC 2ZVVA 2IO4A 4D2GA 5DA7A 3AIXB 3I2MX 1UL1A 2ZVLA 2NTIA 1ISQA 3G65B 2IX2C 5IY4A 3HSLX 4ZTDA 4YHRA 4HK1A 2HIIB 2ZVMA 1T6LA 1CZDA 2AWAA 3V62B 1SXJF 1B77A 3F1WA 5H0TA 5E0VA 2ZVWA 5IXAA 3A2FB 4L60A 3AIZC 5IWDA 2HIKA 3G65C 1VYMA 5CFKA 2Z0LA 3GGRA 1B8HA 5DAIA 4L6PA 3K4XA 3WGWA 1IZ4A 2NTIB 3U61F 1RWZA 4CS5A 2OD8A 3GPMA 3LX1A 2IX2A 2ZVKA 4RJFA 3V61B 1IZ5A 3GPNA 3P83A 2HIKB 1U7BA 2NTIC 1U76A 3A1JA 3GGRB 3U60F 2IO4B 3AIZA 3FDSC 5E0UA 3AIXA 3G65A 3FDSD 1GE8A 2HIIA 5A6DA 3P87A 3V60B 3HI8A 3U5ZF 1DMLA 1UD9A 2HIKC 2IJXA 3IFVA 1AXCA 3GGRC 5HACA 3TBLA 3VKXA 2IX2B 2AVTA 1RXMA 2IZOC 3P91A 1PLRA 5E0TA 3A1JC 3LX2A 1VYJA 1RXZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JNE D;  2IZO B;  4TR6 A;  1W60 A;  5AUJ A;  1PLQ A;  3A1J B;  5B7O A;  1YYP A;  2HII C;  2ZVV A;  2IO4 A;  4D2G A;  5DA7 A;  3AIX B;  3I2M X;  1UL1 A;  2ZVL A;  2NTI A;  1ISQ A;  3G65 B;  2IX2 C;  5IY4 A;  3HSL X;  4ZTD A;  4YHR A;  4HK1 A;  2HII B;  2ZVM A;  1T6L A;  1CZD A;  2AWA A;  3V62 B;  1SXJ F;  1B77 A;  3F1W A;  5H0T A;  5E0V A;  2ZVW A;  5IXA A;  3A2F B;  4L60 A;  3AIZ C;  5IWD A;  2HIK A;  3G65 C;  1VYM A;  5CFK A;  2Z0L A;  3GGR A;  1B8H A;  5DAI A;  4L6P A;  3K4X A;  3WGW A;  1IZ4 A;  2NTI B;  3U61 F;  1RWZ A;  4CS5 A;  2OD8 A;  3GPM A;  3LX1 A;  2IX2 A;  2ZVK A;  4RJF A;  3V61 B;  1IZ5 A;  3GPN A;  3P83 A;  2HIK B;  1U7B A;  2NTI C;  1U76 A;  3A1J A;  3GGR B;  3U60 F;  2IO4 B;  3AIZ A;  3FDS C;  5E0U A;  3AIX A;  3G65 A;  3FDS D;  1GE8 A;  2HII A;  5A6D A;  3P87 A;  3V60 B;  3HI8 A;  3U5Z F;  1DML A;  1UD9 A;  2HIK C;  2IJX A;  3IFV A;  1AXC A;  3GGR C;  5HAC A;  3TBL A;  3VKX A;  2IX2 B;  2AVT A;  1RXM A;  2IZO C;  3P91 A;  1PLR A;  5E0T A;  3A1J C;  3LX2 A;  1VYJ A;  1RXZ A; 
#chains in the Genus database with same CATH topology
 5JNE D;  2IZO B;  4TR6 A;  1W60 A;  5AUJ A;  1PLQ A;  3A1J B;  5B7O A;  1YYP A;  2HII C;  2ZVV A;  2IO4 A;  4D2G A;  5DA7 A;  3AIX B;  3I2M X;  1UL1 A;  2ZVL A;  2NTI A;  1ISQ A;  3G65 B;  2IX2 C;  5IY4 A;  3HSL X;  4ZTD A;  4YHR A;  4HK1 A;  2HII B;  2ZVM A;  1T6L A;  1CZD A;  2AWA A;  3V62 B;  1SXJ F;  1B77 A;  3F1W A;  5H0T A;  5E0V A;  2ZVW A;  5IXA A;  3A2F B;  4L60 A;  3AIZ C;  5IWD A;  2HIK A;  3G65 C;  1VYM A;  5CFK A;  2Z0L A;  3GGR A;  1B8H A;  5DAI A;  4L6P A;  3K4X A;  3WGW A;  1IZ4 A;  2NTI B;  3U61 F;  1RWZ A;  4CS5 A;  2OD8 A;  3GPM A;  3LX1 A;  2IX2 A;  2ZVK A;  4RJF A;  3V61 B;  1IZ5 A;  3GPN A;  3P83 A;  2HIK B;  1U7B A;  2NTI C;  1U76 A;  3A1J A;  3GGR B;  3U60 F;  2IO4 B;  3AIZ A;  3FDS C;  5E0U A;  3AIX A;  3G65 A;  3FDS D;  1GE8 A;  2HII A;  5A6D A;  3P87 A;  3V60 B;  3HI8 A;  3U5Z F;  1DML A;  1UD9 A;  2HIK C;  2IJX A;  3IFV A;  1AXC A;  3GGR C;  5HAC A;  3TBL A;  3VKX A;  2IX2 B;  2AVT A;  1RXM A;  2IZO C;  3P91 A;  1PLR A;  5E0T A;  3A1J C;  3LX2 A;  1VYJ A;  1RXZ A; 
#chains in the Genus database with same CATH homology
 5JNE D;  2IZO B;  4TR6 A;  1W60 A;  5AUJ A;  1PLQ A;  3A1J B;  5B7O A;  1YYP A;  2HII C;  2ZVV A;  2IO4 A;  4D2G A;  5DA7 A;  3AIX B;  3I2M X;  1UL1 A;  2ZVL A;  2NTI A;  1ISQ A;  3G65 B;  2IX2 C;  5IY4 A;  3HSL X;  4ZTD A;  4YHR A;  4HK1 A;  2HII B;  2ZVM A;  1T6L A;  1CZD A;  2AWA A;  3V62 B;  1SXJ F;  1B77 A;  3F1W A;  5H0T A;  5E0V A;  2ZVW A;  5IXA A;  3A2F B;  4L60 A;  3AIZ C;  5IWD A;  2HIK A;  3G65 C;  1VYM A;  5CFK A;  2Z0L A;  3GGR A;  1B8H A;  5DAI A;  4L6P A;  3K4X A;  3WGW A;  1IZ4 A;  2NTI B;  3U61 F;  1RWZ A;  4CS5 A;  2OD8 A;  3GPM A;  3LX1 A;  2IX2 A;  2ZVK A;  4RJF A;  3V61 B;  1IZ5 A;  3GPN A;  3P83 A;  2HIK B;  1U7B A;  2NTI C;  1U76 A;  3A1J A;  3GGR B;  3U60 F;  2IO4 B;  3AIZ A;  3FDS C;  5E0U A;  3AIX A;  3G65 A;  3FDS D;  1GE8 A;  2HII A;  5A6D A;  3P87 A;  3V60 B;  3HI8 A;  3U5Z F;  1DML A;  1UD9 A;  2HIK C;  2IJX A;  3IFV A;  1AXC A;  3GGR C;  5HAC A;  3TBL A;  3VKX A;  2IX2 B;  2AVT A;  1RXM A;  2IZO C;  3P91 A;  1PLR A;  5E0T A;  3A1J C;  3LX2 A;  1VYJ A;  1RXZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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