3LXVA

Tyrosine 447 of protocatechuate 3,4-dioxygenase controls efficient progress through catalysis
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
200
structure length
200
Chain Sequence
PIELLPETPSQTAGPYVHIGLALEAAGNPTRDQEIWNRLAKPDAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNAAGVPMAPHINISLFARGINIHLHTRLYFDDEAQANAKCPVLNLIEQPQRRETLIAKRCEVDGKTAYRFDIRIQGEGETVFFDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase/oxidoreductase
molecule keywords Protocatechuate 3,4-dioxygenase alpha chain
publication title Tyrosine 447 of Protocatechuate 3,4-Dioxygenase Controls Efficient Progress Through Catalysis
rcsb
source organism Pseudomonas putida
total genus 42
structure length 200
sequence length 200
chains with identical sequence B, C
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2010-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3lxvA00
3LMXM 2PCDM 3MV6A 4WHSB 1EOAA 2BUWA 1EO2A 2BUQA 1EOBA 3PCBA 3T63A 3O6JA 3LXVA 2BUXB 4WHRB 3PCLM 3PCGA 3LKTM 2BV0B 3MV4A 3HHXA 3I51A 3PCJM 1YKPA 2BUZA 3PCEM 1EOCB 3PCCA 2BURB 3PCDM 1YKMA 4WHPA 2BUVA 3MFLA 3PCFM 3PCHM 1DLQA 3T67A 2BOYA 2BUUA 3PCMA 1DLTA 1YKLA 3PCBM 2AZQA 3T63M 4WHPB 1YKNB 4WHSD 4WHOB 3MI1A 1YKKB 1EO9B 3PCGM 1EOAB 2BUWB 1EO2B 4WHPD 2BUQB 3HJSA 1EOBB 4WHOD 4WHQA 2BUYA 4WHRF 3HHYA 3PCCM 1TMXA 3PCAA 3MI5A 5TD3A 2BUMA 3MFLM 1YKPB 2BUTA 3O6RA 3MV6M 3PCIA 2BUZB 1DLMA 3T67M 3PCMM 3HJ8A 3N9TA 3TH1A 1YKMB 3PCKA 3LXVM 2BUVB 2XSRA 3MI1M 2BUMB 4ILTA 3MV4M 3PCNA 2BUUB 2BUXA 1YKLB 3I4VA 4WHRA 2XSVA 1DMHA 3PCFA 2BV0A 3LMXA 2PCDA 3O5UA 3PCAM 3MI5M 1EOCA 3PCIM 2BURA 3HKPA 4WHQB 2BUYB 1YKOA 3PCLA 3LKTA 3HJQA 1S9AA 3PCJA 3PCKM 4ILVA 3PCEA 4WHSA 3I4YA 3O32A 2BUTB 3PCDA 3PCNM 1YKOB 1YKNA 3HGIA 4WHOA 2XSUA 1YKKA 1EO9A 3PCHA
chains in the Genus database with same CATH superfamily
3LMXM 2PCDM 3MV6A 4WHSB 1EOAA 2BUWA 1EO2A 2BUQA 1EOBA 3PCBA 3T63A 3O6JA 3LXVA 2BUXB 4WHRB 3PCLM 3PCGA 3LKTM 2BV0B 3MV4A 3HHXA 3I51A 3PCJM 1YKPA 2BUZA 3PCEM 1EOCB 3PCCA 2BURB 3PCDM 1YKMA 4WHPA 2BUVA 3MFLA 3PCFM 3PCHM 1DLQA 3T67A 2BOYA 2BUUA 3PCMA 1DLTA 1YKLA 3PCBM 2AZQA 3T63M 4WHPB 1YKNB 4WHSD 4WHOB 3MI1A 1YKKB 1EO9B 3PCGM 1EOAB 2BUWB 1EO2B 4WHPD 2BUQB 3HJSA 1EOBB 4WHOD 4WHQA 2BUYA 4WHRF 3HHYA 3PCCM 1TMXA 3PCAA 3MI5A 5TD3A 2BUMA 3MFLM 1YKPB 2BUTA 3O6RA 3MV6M 3PCIA 2BUZB 1DLMA 3T67M 3PCMM 3HJ8A 3N9TA 3TH1A 1YKMB 3PCKA 3LXVM 2BUVB 2XSRA 3MI1M 2BUMB 4ILTA 3MV4M 3PCNA 2BUUB 2BUXA 1YKLB 3I4VA 4WHRA 2XSVA 1DMHA 3PCFA 2BV0A 3LMXA 2PCDA 3O5UA 3PCAM 3MI5M 1EOCA 3PCIM 2BURA 3HKPA 4WHQB 2BUYB 1YKOA 3PCLA 3LKTA 3HJQA 1S9AA 3PCJA 3PCKM 4ILVA 3PCEA 4WHSA 3I4YA 3O32A 2BUTB 3PCDA 3PCNM 1YKOB 1YKNA 3HGIA 4WHOA 2XSUA 1YKKA 1EO9A 3PCHA
chains in the Genus database with same CATH topology
3LMXM 2PCDM 3MV6A 4WHSB 1EOAA 2BUWA 1EO2A 2BUQA 1EOBA 3PCBA 3T63A 3O6JA 3LXVA 2BUXB 4WHRB 3PCLM 3PCGA 3LKTM 2BV0B 3MV4A 3HHXA 3I51A 3PCJM 1YKPA 2BUZA 3PCEM 1EOCB 3PCCA 2BURB 3PCDM 1YKMA 4WHPA 2BUVA 3MFLA 3PCFM 3PCHM 1DLQA 3T67A 2BOYA 2BUUA 3PCMA 1DLTA 1YKLA 3PCBM 2AZQA 3T63M 4WHPB 1YKNB 4WHSD 4WHOB 3MI1A 1YKKB 1EO9B 3PCGM 1EOAB 2BUWB 1EO2B 4WHPD 2BUQB 3HJSA 1EOBB 4WHOD 4WHQA 2BUYA 4WHRF 3HHYA 3PCCM 1TMXA 3PCAA 3MI5A 5TD3A 2BUMA 3MFLM 1YKPB 2BUTA 3O6RA 3MV6M 3PCIA 2BUZB 1DLMA 3T67M 3PCMM 3HJ8A 3N9TA 3TH1A 1YKMB 3PCKA 3LXVM 2BUVB 2XSRA 3MI1M 2BUMB 4ILTA 3MV4M 3PCNA 2BUUB 2BUXA 1YKLB 3I4VA 4WHRA 2XSVA 1DMHA 3PCFA 2BV0A 3LMXA 2PCDA 3O5UA 3PCAM 3MI5M 1EOCA 3PCIM 2BURA 3HKPA 4WHQB 2BUYB 1YKOA 3PCLA 3LKTA 3HJQA 1S9AA 3PCJA 3PCKM 4ILVA 3PCEA 4WHSA 3I4YA 3O32A 2BUTB 3PCDA 3PCNM 1YKOB 1YKNA 3HGIA 4WHOA 2XSUA 1YKKA 1EO9A 3PCHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LMX M;  2PCD M;  3MV6 A;  4WHS B;  1EOA A;  2BUW A;  1EO2 A;  2BUQ A;  1EOB A;  3PCB A;  3T63 A;  3O6J A;  3LXV A;  2BUX B;  4WHR B;  3PCL M;  3PCG A;  3LKT M;  2BV0 B;  3MV4 A;  3HHX A;  3I51 A;  3PCJ M;  1YKP A;  2BUZ A;  3PCE M;  1EOC B;  3PCC A;  2BUR B;  3PCD M;  1YKM A;  4WHP A;  2BUV A;  3MFL A;  3PCF M;  3PCH M;  1DLQ A;  3T67 A;  2BOY A;  2BUU A;  3PCM A;  1DLT A;  1YKL A;  3PCB M;  2AZQ A;  3T63 M;  4WHP B;  1YKN B;  4WHS D;  4WHO B;  3MI1 A;  1YKK B;  1EO9 B;  3PCG M;  1EOA B;  2BUW B;  1EO2 B;  4WHP D;  2BUQ B;  3HJS A;  1EOB B;  4WHO D;  4WHQ A;  2BUY A;  4WHR F;  3HHY A;  3PCC M;  1TMX A;  3PCA A;  3MI5 A;  5TD3 A;  2BUM A;  3MFL M;  1YKP B;  2BUT A;  3O6R A;  3MV6 M;  3PCI A;  2BUZ B;  1DLM A;  3T67 M;  3PCM M;  3HJ8 A;  3N9T A;  3TH1 A;  1YKM B;  3PCK A;  3LXV M;  2BUV B;  2XSR A;  3MI1 M;  2BUM B;  4ILT A;  3MV4 M;  3PCN A;  2BUU B;  2BUX A;  1YKL B;  3I4V A;  4WHR A;  2XSV A;  1DMH A;  3PCF A;  2BV0 A;  3LMX A;  2PCD A;  3O5U A;  3PCA M;  3MI5 M;  1EOC A;  3PCI M;  2BUR A;  3HKP A;  4WHQ B;  2BUY B;  1YKO A;  3PCL A;  3LKT A;  3HJQ A;  1S9A A;  3PCJ A;  3PCK M;  4ILV A;  3PCE A;  4WHS A;  3I4Y A;  3O32 A;  2BUT B;  3PCD A;  3PCN M;  1YKO B;  1YKN A;  3HGI A;  4WHO A;  2XSU A;  1YKK A;  1EO9 A;  3PCH A; 
#chains in the Genus database with same CATH topology
 3LMX M;  2PCD M;  3MV6 A;  4WHS B;  1EOA A;  2BUW A;  1EO2 A;  2BUQ A;  1EOB A;  3PCB A;  3T63 A;  3O6J A;  3LXV A;  2BUX B;  4WHR B;  3PCL M;  3PCG A;  3LKT M;  2BV0 B;  3MV4 A;  3HHX A;  3I51 A;  3PCJ M;  1YKP A;  2BUZ A;  3PCE M;  1EOC B;  3PCC A;  2BUR B;  3PCD M;  1YKM A;  4WHP A;  2BUV A;  3MFL A;  3PCF M;  3PCH M;  1DLQ A;  3T67 A;  2BOY A;  2BUU A;  3PCM A;  1DLT A;  1YKL A;  3PCB M;  2AZQ A;  3T63 M;  4WHP B;  1YKN B;  4WHS D;  4WHO B;  3MI1 A;  1YKK B;  1EO9 B;  3PCG M;  1EOA B;  2BUW B;  1EO2 B;  4WHP D;  2BUQ B;  3HJS A;  1EOB B;  4WHO D;  4WHQ A;  2BUY A;  4WHR F;  3HHY A;  3PCC M;  1TMX A;  3PCA A;  3MI5 A;  5TD3 A;  2BUM A;  3MFL M;  1YKP B;  2BUT A;  3O6R A;  3MV6 M;  3PCI A;  2BUZ B;  1DLM A;  3T67 M;  3PCM M;  3HJ8 A;  3N9T A;  3TH1 A;  1YKM B;  3PCK A;  3LXV M;  2BUV B;  2XSR A;  3MI1 M;  2BUM B;  4ILT A;  3MV4 M;  3PCN A;  2BUU B;  2BUX A;  1YKL B;  3I4V A;  4WHR A;  2XSV A;  1DMH A;  3PCF A;  2BV0 A;  3LMX A;  2PCD A;  3O5U A;  3PCA M;  3MI5 M;  1EOC A;  3PCI M;  2BUR A;  3HKP A;  4WHQ B;  2BUY B;  1YKO A;  3PCL A;  3LKT A;  3HJQ A;  1S9A A;  3PCJ A;  3PCK M;  4ILV A;  3PCE A;  4WHS A;  3I4Y A;  3O32 A;  2BUT B;  3PCD A;  3PCN M;  1YKO B;  1YKN A;  3HGI A;  4WHO A;  2XSU A;  1YKK A;  1EO9 A;  3PCH A; 
#chains in the Genus database with same CATH homology
 3LMX M;  2PCD M;  3MV6 A;  4WHS B;  1EOA A;  2BUW A;  1EO2 A;  2BUQ A;  1EOB A;  3PCB A;  3T63 A;  3O6J A;  3LXV A;  2BUX B;  4WHR B;  3PCL M;  3PCG A;  3LKT M;  2BV0 B;  3MV4 A;  3HHX A;  3I51 A;  3PCJ M;  1YKP A;  2BUZ A;  3PCE M;  1EOC B;  3PCC A;  2BUR B;  3PCD M;  1YKM A;  4WHP A;  2BUV A;  3MFL A;  3PCF M;  3PCH M;  1DLQ A;  3T67 A;  2BOY A;  2BUU A;  3PCM A;  1DLT A;  1YKL A;  3PCB M;  2AZQ A;  3T63 M;  4WHP B;  1YKN B;  4WHS D;  4WHO B;  3MI1 A;  1YKK B;  1EO9 B;  3PCG M;  1EOA B;  2BUW B;  1EO2 B;  4WHP D;  2BUQ B;  3HJS A;  1EOB B;  4WHO D;  4WHQ A;  2BUY A;  4WHR F;  3HHY A;  3PCC M;  1TMX A;  3PCA A;  3MI5 A;  5TD3 A;  2BUM A;  3MFL M;  1YKP B;  2BUT A;  3O6R A;  3MV6 M;  3PCI A;  2BUZ B;  1DLM A;  3T67 M;  3PCM M;  3HJ8 A;  3N9T A;  3TH1 A;  1YKM B;  3PCK A;  3LXV M;  2BUV B;  2XSR A;  3MI1 M;  2BUM B;  4ILT A;  3MV4 M;  3PCN A;  2BUU B;  2BUX A;  1YKL B;  3I4V A;  4WHR A;  2XSV A;  1DMH A;  3PCF A;  2BV0 A;  3LMX A;  2PCD A;  3O5U A;  3PCA M;  3MI5 M;  1EOC A;  3PCI M;  2BUR A;  3HKP A;  4WHQ B;  2BUY B;  1YKO A;  3PCL A;  3LKT A;  3HJQ A;  1S9A A;  3PCJ A;  3PCK M;  4ILV A;  3PCE A;  4WHS A;  3I4Y A;  3O32 A;  2BUT B;  3PCD A;  3PCN M;  1YKO B;  1YKN A;  3HGI A;  4WHO A;  2XSU A;  1YKK A;  1EO9 A;  3PCH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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