3LXYA

Crystal structure of 4-hydroxythreonine-4-phosphate dehydrogenase from yersinia pestis co92
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
329
structure length
329
Chain Sequence
MHNHNNRLVITPGEPAGVGPDLAITLAQQDWPVELVVCADPALLLARASQLNLPLQLREYQADQPAIAQQAGSLTILPVKTAVNVVPGKLDVGNSHYVVETLAKACDGAISGEFAALVTGPVQKSIINDAGIPFIGHTEFFADRSHCQRVVMMLATEELRVALATTHLPLLAVPGAITQASLHEVITILDNDLKTKFGITQPQIYVCGLNPHAGEGGHMGHEEIDTIIPALNTLRQQGINLIGPLPADTLFQPKYLQHADAVLAMYHDQGLPVLKYQGFGRAVNITLGLPFIRTSVDHGTALELAATGTADVGSFITALNLAIKMINNS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords 4-hydroxythreonine-4-phosphate dehydrogenase
publication title Crystal structure of 4-hydroxythreonine-4-phosphate dehydrogenase from Yersinia pestis CO92
rcsb
source organism Yersinia pestis
total genus 112
structure length 329
sequence length 329
ec nomenclature ec 1.1.1.262: 4-hydroxythreonine-4-phosphate dehydrogenase.
pdb deposition date 2010-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04166 PdxA Pyridoxal phosphate biosynthetic protein PdxA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate Dehydrogenase 3lxyA00
4ICDA 3WZYA 1A05A 4JA8A 1CW4A 1TYOA 5J34A 1IDMA 3AH3A 3VL6A 1CM7A 1T0LA 3UDOA 1BL5A 1ZORA 2QFXA 3BLVB 3VKZA 1GC8A 3VL3A 1CW1A 3VL7A 2AYQA 4L04A 2ZTWA 4P69C 4L03A 1PS7A 3BLXA 5GRHA 3DMSA 6ICDA 3TSNA 3ICDA 4ATYA 2QFYA 1DR0A 3MASA 2QFWA 1DPZA 3VL4A 3U9EA 1W0DA 1IDDA 3TNGA 3LXYA 1PB1A 4AJAA 1V5BA 3VMKA 1XKDA 1PTMA 3MAPA 1HJ6A 4AJSA 2Y41A 3VMJA 1XAAA 2Y42A 2D1CA 1YCOA 2Y3ZA 5GREA 4AOVA 2Y40A 1R8KA 3ASJA 4HCXA 4JQPA 3BLXB 5J33A 1WALA 5GRHB 1CW7A 1HQSA 1ISOA 4L06A 1WPWA 4KZOA 4WUOA 5GRFA 5LGEA 4UMXA 4BNPA 1PS6A 4IWHA 1IPDA 2E0CA 1X0LA 4XS3A 3MASB 3R8WA 2QFVA 2IV0A 2DHTA 3UF6A 4AOYA 9ICDA 1VLCA 3LCBC 5GRIA 1GRPA 3FLKA 1DR8A 3WZWA 1SJSA 3US8A 4AJRA 1OSIA 1GC9A 1CNZA 1U7NA 2G4OA 5I96A 4YB4A 5GRLA 1AI2A 1XADA 5HN4A 5J32A 1V94A 1IDFA 8ICDA 1IDCA 3VL2A 5DE1A 2E5MA 5GREB 4XXVA 1GROA 1PB3A 5HN5A 4UMYA 3TY3A 1YXOA 5L57A 4AJBA 1VI1A 1XGVA 1HEXA 3WZVA 7ICDA 5GRFB 2UXQA 5I95A 1XABA 3MARA 1LWDA 3BLVA 5L58A 1IKAA 4AOUA 2UXRA 5ICDA 1OSJA 4I3LA 3U1HA 1XACA 1G2UA 4F7IA 5GRIB 4AJ3A 1T09A 1V53A 3TY4A 4Y1PA 3WZXA 1IDEA 5GRLB 3INMA 5HN6A 5HN3A 4AJCA 1P8FA 4XRXA 5K11A 1AI3A 3UDUA 3FMXX 2HI1A 2D4VA 4I3KA 5K10A 3VMLA
chains in the Genus database with same CATH superfamily
4ICDA 3WZYA 1A05A 4JA8A 1CW4A 1TYOA 5J34A 1IDMA 3AH3A 3VL6A 1CM7A 1T0LA 3UDOA 1BL5A 1ZORA 2QFXA 3BLVB 3VKZA 1GC8A 3VL3A 1CW1A 3VL7A 2AYQA 4L04A 2ZTWA 4P69C 4L03A 1PS7A 3BLXA 5GRHA 3DMSA 6ICDA 3TSNA 3ICDA 4ATYA 2QFYA 1DR0A 3MASA 2QFWA 1DPZA 3VL4A 3U9EA 1W0DA 1IDDA 3TNGA 3LXYA 1PB1A 4AJAA 1V5BA 3VMKA 1XKDA 1PTMA 3MAPA 1HJ6A 4AJSA 2Y41A 3VMJA 1XAAA 2Y42A 2D1CA 1YCOA 2Y3ZA 5GREA 4AOVA 2Y40A 1R8KA 3ASJA 4HCXA 4JQPA 3BLXB 5J33A 1WALA 5GRHB 1CW7A 1HQSA 1ISOA 4L06A 1WPWA 4KZOA 4WUOA 5GRFA 5LGEA 4UMXA 4BNPA 1PS6A 4IWHA 1IPDA 2E0CA 1X0LA 4XS3A 3MASB 3R8WA 2QFVA 2IV0A 2DHTA 3UF6A 4AOYA 9ICDA 1VLCA 3LCBC 5GRIA 1GRPA 3FLKA 1DR8A 3WZWA 1SJSA 3US8A 4AJRA 1OSIA 1GC9A 1CNZA 1U7NA 2G4OA 5I96A 4YB4A 5GRLA 1AI2A 1XADA 5HN4A 5J32A 1V94A 1IDFA 8ICDA 1IDCA 3VL2A 5DE1A 2E5MA 5GREB 4XXVA 1GROA 1PB3A 5HN5A 4UMYA 3TY3A 1YXOA 5L57A 4AJBA 1VI1A 1XGVA 1HEXA 3WZVA 7ICDA 5GRFB 2UXQA 5I95A 1XABA 3MARA 1LWDA 3BLVA 5L58A 1IKAA 4AOUA 2UXRA 5ICDA 1OSJA 4I3LA 3U1HA 1XACA 1G2UA 4F7IA 5GRIB 4AJ3A 1T09A 1V53A 3TY4A 4Y1PA 3WZXA 1IDEA 5GRLB 3INMA 5HN6A 5HN3A 4AJCA 1P8FA 4XRXA 5K11A 1AI3A 3UDUA 3FMXX 2HI1A 2D4VA 4I3KA 5K10A 3VMLA
chains in the Genus database with same CATH topology
4ICDA 3WZYA 1A05A 4JA8A 1CW4A 1TYOA 5J34A 1IDMA 3AH3A 3VL6A 1CM7A 1T0LA 3UDOA 1BL5A 1ZORA 2QFXA 3BLVB 3VKZA 1GC8A 3VL3A 1CW1A 3VL7A 2AYQA 4L04A 2ZTWA 4P69C 4L03A 1PS7A 3BLXA 5GRHA 3DMSA 6ICDA 3TSNA 3ICDA 4ATYA 2QFYA 1DR0A 3MASA 2QFWA 1DPZA 3VL4A 3U9EA 1W0DA 1IDDA 3TNGA 3LXYA 1PB1A 4AJAA 1V5BA 3VMKA 1XKDA 1PTMA 3MAPA 1HJ6A 4AJSA 2Y41A 3VMJA 1XAAA 2Y42A 2D1CA 1YCOA 2Y3ZA 5GREA 4AOVA 2Y40A 1R8KA 3ASJA 4HCXA 4JQPA 3BLXB 5J33A 1WALA 5GRHB 1CW7A 1HQSA 1ISOA 4L06A 1WPWA 4KZOA 4WUOA 5GRFA 5LGEA 4UMXA 4BNPA 1PS6A 4IWHA 1IPDA 2E0CA 1X0LA 4XS3A 3MASB 3R8WA 2QFVA 2IV0A 2DHTA 3UF6A 4AOYA 9ICDA 1VLCA 3LCBC 5GRIA 1GRPA 3FLKA 1DR8A 3WZWA 1SJSA 3US8A 4AJRA 1OSIA 1GC9A 1CNZA 1U7NA 2G4OA 5I96A 4YB4A 5GRLA 1AI2A 1XADA 5HN4A 5J32A 1V94A 1IDFA 8ICDA 1IDCA 3VL2A 5DE1A 2E5MA 5GREB 4XXVA 1GROA 1PB3A 5HN5A 4UMYA 3TY3A 1YXOA 5L57A 4AJBA 1VI1A 1XGVA 1HEXA 3WZVA 7ICDA 5GRFB 2UXQA 5I95A 1XABA 3MARA 1LWDA 3BLVA 5L58A 1IKAA 4AOUA 2UXRA 5ICDA 1OSJA 4I3LA 3U1HA 1XACA 1G2UA 4F7IA 5GRIB 4AJ3A 1T09A 1V53A 3TY4A 4Y1PA 3WZXA 1IDEA 5GRLB 3INMA 5HN6A 5HN3A 4AJCA 1P8FA 4XRXA 5K11A 1AI3A 3UDUA 3FMXX 2HI1A 2D4VA 4I3KA 5K10A 3VMLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ICD A;  3WZY A;  1A05 A;  4JA8 A;  1CW4 A;  1TYO A;  5J34 A;  1IDM A;  3AH3 A;  3VL6 A;  1CM7 A;  1T0L A;  3UDO A;  1BL5 A;  1ZOR A;  2QFX A;  3BLV B;  3VKZ A;  1GC8 A;  3VL3 A;  1CW1 A;  3VL7 A;  2AYQ A;  4L04 A;  2ZTW A;  4P69 C;  4L03 A;  1PS7 A;  3BLX A;  5GRH A;  3DMS A;  6ICD A;  3TSN A;  3ICD A;  4ATY A;  2QFY A;  1DR0 A;  3MAS A;  2QFW A;  1DPZ A;  3VL4 A;  3U9E A;  1W0D A;  1IDD A;  3TNG A;  3LXY A;  1PB1 A;  4AJA A;  1V5B A;  3VMK A;  1XKD A;  1PTM A;  3MAP A;  1HJ6 A;  4AJS A;  2Y41 A;  3VMJ A;  1XAA A;  2Y42 A;  2D1C A;  1YCO A;  2Y3Z A;  5GRE A;  4AOV A;  2Y40 A;  1R8K A;  3ASJ A;  4HCX A;  4JQP A;  3BLX B;  5J33 A;  1WAL A;  5GRH B;  1CW7 A;  1HQS A;  1ISO A;  4L06 A;  1WPW A;  4KZO A;  4WUO A;  5GRF A;  5LGE A;  4UMX A;  4BNP A;  1PS6 A;  4IWH A;  1IPD A;  2E0C A;  1X0L A;  4XS3 A;  3MAS B;  3R8W A;  2QFV A;  2IV0 A;  2DHT A;  3UF6 A;  4AOY A;  9ICD A;  1VLC A;  3LCB C;  5GRI A;  1GRP A;  3FLK A;  1DR8 A;  3WZW A;  1SJS A;  3US8 A;  4AJR A;  1OSI A;  1GC9 A;  1CNZ A;  1U7N A;  2G4O A;  5I96 A;  4YB4 A;  5GRL A;  1AI2 A;  1XAD A;  5HN4 A;  5J32 A;  1V94 A;  1IDF A;  8ICD A;  1IDC A;  3VL2 A;  5DE1 A;  2E5M A;  5GRE B;  4XXV A;  1GRO A;  1PB3 A;  5HN5 A;  4UMY A;  3TY3 A;  1YXO A;  5L57 A;  4AJB A;  1VI1 A;  1XGV A;  1HEX A;  3WZV A;  7ICD A;  5GRF B;  2UXQ A;  5I95 A;  1XAB A;  3MAR A;  1LWD A;  3BLV A;  5L58 A;  1IKA A;  4AOU A;  2UXR A;  5ICD A;  1OSJ A;  4I3L A;  3U1H A;  1XAC A;  1G2U A;  4F7I A;  5GRI B;  4AJ3 A;  1T09 A;  1V53 A;  3TY4 A;  4Y1P A;  3WZX A;  1IDE A;  5GRL B;  3INM A;  5HN6 A;  5HN3 A;  4AJC A;  1P8F A;  4XRX A;  5K11 A;  1AI3 A;  3UDU A;  3FMX X;  2HI1 A;  2D4V A;  4I3K A;  5K10 A;  3VML A; 
#chains in the Genus database with same CATH topology
 4ICD A;  3WZY A;  1A05 A;  4JA8 A;  1CW4 A;  1TYO A;  5J34 A;  1IDM A;  3AH3 A;  3VL6 A;  1CM7 A;  1T0L A;  3UDO A;  1BL5 A;  1ZOR A;  2QFX A;  3BLV B;  3VKZ A;  1GC8 A;  3VL3 A;  1CW1 A;  3VL7 A;  2AYQ A;  4L04 A;  2ZTW A;  4P69 C;  4L03 A;  1PS7 A;  3BLX A;  5GRH A;  3DMS A;  6ICD A;  3TSN A;  3ICD A;  4ATY A;  2QFY A;  1DR0 A;  3MAS A;  2QFW A;  1DPZ A;  3VL4 A;  3U9E A;  1W0D A;  1IDD A;  3TNG A;  3LXY A;  1PB1 A;  4AJA A;  1V5B A;  3VMK A;  1XKD A;  1PTM A;  3MAP A;  1HJ6 A;  4AJS A;  2Y41 A;  3VMJ A;  1XAA A;  2Y42 A;  2D1C A;  1YCO A;  2Y3Z A;  5GRE A;  4AOV A;  2Y40 A;  1R8K A;  3ASJ A;  4HCX A;  4JQP A;  3BLX B;  5J33 A;  1WAL A;  5GRH B;  1CW7 A;  1HQS A;  1ISO A;  4L06 A;  1WPW A;  4KZO A;  4WUO A;  5GRF A;  5LGE A;  4UMX A;  4BNP A;  1PS6 A;  4IWH A;  1IPD A;  2E0C A;  1X0L A;  4XS3 A;  3MAS B;  3R8W A;  2QFV A;  2IV0 A;  2DHT A;  3UF6 A;  4AOY A;  9ICD A;  1VLC A;  3LCB C;  5GRI A;  1GRP A;  3FLK A;  1DR8 A;  3WZW A;  1SJS A;  3US8 A;  4AJR A;  1OSI A;  1GC9 A;  1CNZ A;  1U7N A;  2G4O A;  5I96 A;  4YB4 A;  5GRL A;  1AI2 A;  1XAD A;  5HN4 A;  5J32 A;  1V94 A;  1IDF A;  8ICD A;  1IDC A;  3VL2 A;  5DE1 A;  2E5M A;  5GRE B;  4XXV A;  1GRO A;  1PB3 A;  5HN5 A;  4UMY A;  3TY3 A;  1YXO A;  5L57 A;  4AJB A;  1VI1 A;  1XGV A;  1HEX A;  3WZV A;  7ICD A;  5GRF B;  2UXQ A;  5I95 A;  1XAB A;  3MAR A;  1LWD A;  3BLV A;  5L58 A;  1IKA A;  4AOU A;  2UXR A;  5ICD A;  1OSJ A;  4I3L A;  3U1H A;  1XAC A;  1G2U A;  4F7I A;  5GRI B;  4AJ3 A;  1T09 A;  1V53 A;  3TY4 A;  4Y1P A;  3WZX A;  1IDE A;  5GRL B;  3INM A;  5HN6 A;  5HN3 A;  4AJC A;  1P8F A;  4XRX A;  5K11 A;  1AI3 A;  3UDU A;  3FMX X;  2HI1 A;  2D4V A;  4I3K A;  5K10 A;  3VML A; 
#chains in the Genus database with same CATH homology
 4ICD A;  3WZY A;  1A05 A;  4JA8 A;  1CW4 A;  1TYO A;  5J34 A;  1IDM A;  3AH3 A;  3VL6 A;  1CM7 A;  1T0L A;  3UDO A;  1BL5 A;  1ZOR A;  2QFX A;  3BLV B;  3VKZ A;  1GC8 A;  3VL3 A;  1CW1 A;  3VL7 A;  2AYQ A;  4L04 A;  2ZTW A;  4P69 C;  4L03 A;  1PS7 A;  3BLX A;  5GRH A;  3DMS A;  6ICD A;  3TSN A;  3ICD A;  4ATY A;  2QFY A;  1DR0 A;  3MAS A;  2QFW A;  1DPZ A;  3VL4 A;  3U9E A;  1W0D A;  1IDD A;  3TNG A;  3LXY A;  1PB1 A;  4AJA A;  1V5B A;  3VMK A;  1XKD A;  1PTM A;  3MAP A;  1HJ6 A;  4AJS A;  2Y41 A;  3VMJ A;  1XAA A;  2Y42 A;  2D1C A;  1YCO A;  2Y3Z A;  5GRE A;  4AOV A;  2Y40 A;  1R8K A;  3ASJ A;  4HCX A;  4JQP A;  3BLX B;  5J33 A;  1WAL A;  5GRH B;  1CW7 A;  1HQS A;  1ISO A;  4L06 A;  1WPW A;  4KZO A;  4WUO A;  5GRF A;  5LGE A;  4UMX A;  4BNP A;  1PS6 A;  4IWH A;  1IPD A;  2E0C A;  1X0L A;  4XS3 A;  3MAS B;  3R8W A;  2QFV A;  2IV0 A;  2DHT A;  3UF6 A;  4AOY A;  9ICD A;  1VLC A;  3LCB C;  5GRI A;  1GRP A;  3FLK A;  1DR8 A;  3WZW A;  1SJS A;  3US8 A;  4AJR A;  1OSI A;  1GC9 A;  1CNZ A;  1U7N A;  2G4O A;  5I96 A;  4YB4 A;  5GRL A;  1AI2 A;  1XAD A;  5HN4 A;  5J32 A;  1V94 A;  1IDF A;  8ICD A;  1IDC A;  3VL2 A;  5DE1 A;  2E5M A;  5GRE B;  4XXV A;  1GRO A;  1PB3 A;  5HN5 A;  4UMY A;  3TY3 A;  1YXO A;  5L57 A;  4AJB A;  1VI1 A;  1XGV A;  1HEX A;  3WZV A;  7ICD A;  5GRF B;  2UXQ A;  5I95 A;  1XAB A;  3MAR A;  1LWD A;  3BLV A;  5L58 A;  1IKA A;  4AOU A;  2UXR A;  5ICD A;  1OSJ A;  4I3L A;  3U1H A;  1XAC A;  1G2U A;  4F7I A;  5GRI B;  4AJ3 A;  1T09 A;  1V53 A;  3TY4 A;  4Y1P A;  3WZX A;  1IDE A;  5GRL B;  3INM A;  5HN6 A;  5HN3 A;  4AJC A;  1P8F A;  4XRX A;  5K11 A;  1AI3 A;  3UDU A;  3FMX X;  2HI1 A;  2D4V A;  4I3K A;  5K10 A;  3VML A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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