3M1NA

Crystal structure of human sonic hedgehog n-terminal domain
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
164
structure length
164
Chain Sequence
GPGRGFGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords Sonic hedgehog protein
publication title Mapping sonic hedgehog-receptor interactions by steric interference.
pubmed doi rcsb
source organism Homo sapiens
total genus 40
structure length 164
sequence length 164
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01085 HH_signal Hedgehog amino-terminal signalling domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1380.10 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase; domain 2 Muramoyl-pentapeptide Carboxypeptidase; domain 2 3m1nA01
2WFXA 1LBUA 4MURA 4JIDA 4C4MA 3HO5H 2VO9A 4MUQA 2WG4A 3K7JB 4OX5A 1TZPA 1U10A 1VHHA 3N1PB 2WG3A 4D0YA 4MUSA 3N1OA 2WFRA 4MUTA 4NT9A 2IBGE 3K7GB 3D1MA 3N1MB 4OAKA 2WFQA 1R44A 3N1GA 3M1NA 4OXDA 3MXWA 5HNMA 4MPHA 3N1QA 3K7IB 3N1FA 4OX3A 3K7HB 3N1RA 4F78A 4C4NA
chains in the Genus database with same CATH superfamily
2WFXA 1LBUA 4MURA 4JIDA 4C4MA 2J3TA 3HO5H 2VO9A 4MUQA 2WG4A 2CFHC 3K7JB 3NJCA 2CFHA 3KXCC 4OX5A 2OSOA 2J3RA 1TZPA 1U10A 1VHHA 3KXCA 3N1PB 2WG3A 2C0JA 4MUSA 3N1OA 2WFRA 4MUTA 4D0YA 4NT9A 2IBGE 3K7GB 4F78A 2PWNA 2J3WD 3D1MA 3N1MB 3CUED 1WC9A 2J3TB 2WFQA 4OAKA 2OSDA 1R44A 3N1GA 2BJNA 3M1NA 4OXDA 3MXWA 2J3RB 5HNMA 4MPHA 2C0JB 3N1QA 3K7IB 3N1FA 4OX3A 1WC8A 3CUEB 3K7HB 3N1RA 2J3WB 4C4NA 1SZ7A
chains in the Genus database with same CATH topology
2WFXA 1LBUA 4MURA 4JIDA 4C4MA 3HO5H 2VO9A 4MUQA 2WG4A 3K7JB 4OX5A 1TZPA 1U10A 1VHHA 3N1PB 2WG3A 4D0YA 4MUSA 3N1OA 2WFRA 4MUTA 4NT9A 2IBGE 3K7GB 3D1MA 3N1MB 4OAKA 2WFQA 1R44A 3N1GA 3M1NA 4OXDA 3MXWA 5HNMA 4MPHA 3N1QA 3K7IB 3N1FA 4OX3A 3K7HB 3N1RA 4F78A 4C4NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WFX A;  1LBU A;  4MUR A;  4JID A;  4C4M A;  3HO5 H;  2VO9 A;  4MUQ A;  2WG4 A;  3K7J B;  4OX5 A;  1TZP A;  1U10 A;  1VHH A;  3N1P B;  2WG3 A;  4D0Y A;  4MUS A;  3N1O A;  2WFR A;  4MUT A;  4NT9 A;  2IBG E;  3K7G B;  3D1M A;  3N1M B;  4OAK A;  2WFQ A;  1R44 A;  3N1G A;  3M1N A;  4OXD A;  3MXW A;  5HNM A;  4MPH A;  3N1Q A;  3K7I B;  3N1F A;  4OX3 A;  3K7H B;  3N1R A;  4F78 A;  4C4N A; 
#chains in the Genus database with same CATH topology
 2WFX A;  1LBU A;  4MUR A;  4JID A;  4C4M A;  2J3T A;  3HO5 H;  2VO9 A;  4MUQ A;  2WG4 A;  2CFH C;  3K7J B;  3NJC A;  2CFH A;  3KXC C;  4OX5 A;  2OSO A;  2J3R A;  1TZP A;  1U10 A;  1VHH A;  3KXC A;  3N1P B;  2WG3 A;  2C0J A;  4MUS A;  3N1O A;  2WFR A;  4MUT A;  4D0Y A;  4NT9 A;  2IBG E;  3K7G B;  4F78 A;  2PWN A;  2J3W D;  3D1M A;  3N1M B;  3CUE D;  1WC9 A;  2J3T B;  2WFQ A;  4OAK A;  2OSD A;  1R44 A;  3N1G A;  2BJN A;  3M1N A;  4OXD A;  3MXW A;  2J3R B;  5HNM A;  4MPH A;  2C0J B;  3N1Q A;  3K7I B;  3N1F A;  4OX3 A;  1WC8 A;  3CUE B;  3K7H B;  3N1R A;  2J3W B;  4C4N A;  1SZ7 A; 
#chains in the Genus database with same CATH homology
 2WFX A;  1LBU A;  4MUR A;  4JID A;  4C4M A;  3HO5 H;  2VO9 A;  4MUQ A;  2WG4 A;  3K7J B;  4OX5 A;  1TZP A;  1U10 A;  1VHH A;  3N1P B;  2WG3 A;  4D0Y A;  4MUS A;  3N1O A;  2WFR A;  4MUT A;  4NT9 A;  2IBG E;  3K7G B;  3D1M A;  3N1M B;  4OAK A;  2WFQ A;  1R44 A;  3N1G A;  3M1N A;  4OXD A;  3MXW A;  5HNM A;  4MPH A;  3N1Q A;  3K7I B;  3N1F A;  4OX3 A;  3K7H B;  3N1R A;  4F78 A;  4C4N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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