The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
114
|
sequence length |
430
|
structure length |
425
|
Chain Sequence |
SRPATPPVTPPSREGHVADLDRFPQDLRVYAMKAGADRQLLPFTEQAAQDARWNRRFFAPWRMTRISVPVKDVAAPFGTDGRPRGYAENLLPWDVTRWGALASGAALDLYPSQAWKGIVVSNSALREVPTLRPMFTAPTRAGQGYPFDMFQRTAVWMGTPVFVGHATADRAWLYVETAFAAGWMPAADVARVDDAFMTRYESGSLAAILRDDTSLNGADGTHLATAHIGTVLPLSGRTVLVPVRAPEGHAVVVPVLLTSGEAAQKPVPLTPGNMAELGNRMMGQPYGWGGLYEDRDCSSTLRDLFTPFGLWLPRNSASQAKAGRYVDIAKLDADDKEARIVAEGVPFMTLLWLRGHITLYLGLHEGQAAMFHNMWGIRTHRGGVEGRYVLGRAVVTSTRPGLDVPGNDNADGLLGRMQGMSILPG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of a Putative gamma-D-glutamyl-L-diamino acid endopeptidase (DVU_0896) from DESULFOVIBRIO VULGARIS HILDENBOROUGH at 1.75 A resolution
rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Desulfovibrio vulgaris
|
| molecule keywords |
Putative gamma-D-glutamyl-L-diamino acid endopeptidase
|
| total genus |
114
|
| structure length |
425
|
| sequence length |
430
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2010-03-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00877 | NLPC_P60 | NlpC/P60 family |
| A | PF12913 | SH3_6 | SH3 domain (SH3b1 type) |
| A | PF12914 | SH3_7 | SH3 domain of SH3b2 type |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | endopeptidase fold (from Nostoc punctiforme) | endopeptidase domain like (from Nostoc punctiforme) |
#chains in the Genus database with same CATH superfamily 4OLK A; 4Q4T A; 3I86 A; 3M1U A; 4Q4G X; 4FGI A; 4EOB A; 2IO8 A; 2EVR A; 4CGK A; 3PBC A; 3H41 A; 4FQB A; 4CT3 A; 4FGD A; 4LJ1 A; 2IO7 A; 3GT2 A; 4F0W A; 3A2Y A; 3NE0 A; 3A30 A; 3S0Q A; 2HBW A; 2IOA A; 4FDY A; 3KW0 A; 4HPE A; 2IF6 A; 3PBI A; 3O98 A; 4F0V A; 2K1G A; 4Q4N A; 4FQA A; 4HZB A; 2K3A A; 3VPJ A; 2VPM A; 2XIV A; 3NPF A; 4EQA A; 2FG0 A; 3A2Z A; 4CSH A; 2LRJ A; 4R0K A; 3VPI A; 4F4M A; 4JXB A; 2VOB A; 4HZ9 A; 4EQ8 A; 2IOB A; 4FGE A; 3PVQ A; 2IO9 A; 2VPS A; #chains in the Genus database with same CATH topology 4HFF A; 4OLK A; 4HFL A; 4Q4T A; 3I86 A; 3M1U A; 4JUR A; 4FGI A; 4Q4G X; 4EOB A; 2IO8 A; 2EVR A; 4CGK A; 3PBC A; 3H41 A; 4FQB A; 4CT3 A; 4FGD A; 4LJ1 A; 2IO7 A; 3GT2 A; 4F0W A; 3EBQ A; 3A2Y A; 3NE0 A; 3A30 A; 3S0Q A; 2HBW A; 2IOA A; 4FDY A; 3KW0 A; 4J30 A; 4HFK A; 2IF6 A; 4HPE A; 3PBI A; 3O98 A; 4F0V A; 2WP7 A; 2K1G A; 4Q4N A; 4FQA A; 4HZB A; 2K3A A; 3VPJ A; 2VPM A; 4J32 A; 2XIV A; 3NPF A; 4EQA A; 2FG0 A; 3A2Z A; 4CSH A; 2LRJ A; 4R0K A; 3VPI A; 4F4M A; 4JXB A; 2VOB A; 4HZ9 A; 4EQ8 A; 2IOB A; 4FGE A; 3PVQ A; 2IO9 A; 2VPS A; #chains in the Genus database with same CATH homology 4OLK A; 4Q4T A; 3I86 A; 3M1U A; 4Q4G X; 4FGI A; 4EOB A; 2IO8 A; 2EVR A; 4CGK A; 3PBC A; 3H41 A; 4FQB A; 4CT3 A; 4FGD A; 4LJ1 A; 2IO7 A; 3GT2 A; 4F0W A; 3A2Y A; 3NE0 A; 3A30 A; 3S0Q A; 2HBW A; 2IOA A; 4FDY A; 3KW0 A; 4HPE A; 2IF6 A; 3PBI A; 3O98 A; 4F0V A; 2K1G A; 4Q4N A; 4FQA A; 4HZB A; 2K3A A; 3VPJ A; 2VPM A; 2XIV A; 3NPF A; 4EQA A; 2FG0 A; 3A2Z A; 4CSH A; 2LRJ A; 4R0K A; 3VPI A; 4F4M A; 4JXB A; 2VOB A; 4HZ9 A; 4EQ8 A; 2IOB A; 4FGE A; 3PVQ A; 2IO9 A; 2VPS A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
