3M1VC

Structural insight into methyl-coenzyme m reductase chemistry using coenzyme b analogues
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
246
structure length
246
Chain Sequence
AQYYPGTTKVAQNRRNFCNPEYELEKLREISDEDVVKILGHRAPGEEYPSVHPPLEEMDEPEDAIREMVEPIDGAKAGDRVRYIQFTDSMYFAPAQPYVRSRAYLCRYRGADAGTLSGRQIIETRERDLEKISKELLETEFFDPARSGVRGKSVHGHSLRLDEDGMMFDMLRRQIYNKDTGRVEMVKNQIGDELDEPVDLGEPLDEETLMEKTTIYRVDGEAYRDDVEAVEIMQRIHVLRSQGGFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Methyl-coenzyme M reductase I subunit alpha
publication title Structural insight into methyl-coenzyme M reductase chemistry using coenzyme B analogues.
pubmed doi rcsb
total genus 83
structure length 246
sequence length 246
chains with identical sequence F
ec nomenclature ec 2.8.4.1: Coenzyme-B sulfoethylthiotransferase.
pdb deposition date 2010-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02240 MCR_gamma Methyl-coenzyme M reductase gamma subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.320.20 Alpha Beta Alpha-Beta Complex Lambda Exonuclease; Chain A Methyl-coenzyme M reductase, gamma subunit 3m1vC00
3M2VC 3POTC 3M1VC 1HBNC 1HBOC 3M2RC 1E6YC 3M2UC 5A8RC 3M32C 5A8WC 1HBUC 3M30C 5A8KC 3SQGC 1MROC 5A0YC 1HBMC 5G0RC 1E6VC
chains in the Genus database with same CATH superfamily
3M2VC 5LD2B 1W36B 3POTC 3M1VC 1HBNC 3SM4A 3SLPA 3L0AA 1HBOC 4CEHA 3K70B 3M2RC 1E6YC 3M2UC 3SZ5A 4WUZA 3U4QA 5A8RC 3K93A 3H4RA 3M32C 5A8WC 3U44A 1HBUC 3M30C 4R5QA 5A8KC 3SQGC 1MROC 5A0YC 1HBMC 4CEJA 5G0RC 1E6VC 1AVQA 3SZ4A 3SYYA 4IC1A 4CEIA
chains in the Genus database with same CATH topology
3M2VC 3POTC 3M1VC 1HBNC 1HBOC 3M2RC 1E6YC 3M2UC 5A8RC 3M32C 5A8WC 1HBUC 3M30C 5A8KC 3SQGC 1MROC 5A0YC 1HBMC 5G0RC 1E6VC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3M2V C;  3POT C;  3M1V C;  1HBN C;  1HBO C;  3M2R C;  1E6Y C;  3M2U C;  5A8R C;  3M32 C;  5A8W C;  1HBU C;  3M30 C;  5A8K C;  3SQG C;  1MRO C;  5A0Y C;  1HBM C;  5G0R C;  1E6V C; 
#chains in the Genus database with same CATH topology
 3M2V C;  5LD2 B;  1W36 B;  3POT C;  3M1V C;  1HBN C;  3SM4 A;  3SLP A;  3L0A A;  1HBO C;  4CEH A;  3K70 B;  3M2R C;  1E6Y C;  3M2U C;  3SZ5 A;  4WUZ A;  3U4Q A;  5A8R C;  3K93 A;  3H4R A;  3M32 C;  5A8W C;  3U44 A;  1HBU C;  3M30 C;  4R5Q A;  5A8K C;  3SQG C;  1MRO C;  5A0Y C;  1HBM C;  4CEJ A;  5G0R C;  1E6V C;  1AVQ A;  3SZ4 A;  3SYY A;  4IC1 A;  4CEI A; 
#chains in the Genus database with same CATH homology
 3M2V C;  3POT C;  3M1V C;  1HBN C;  1HBO C;  3M2R C;  1E6Y C;  3M2U C;  5A8R C;  3M32 C;  5A8W C;  1HBU C;  3M30 C;  5A8K C;  3SQG C;  1MRO C;  5A0Y C;  1HBM C;  5G0R C;  1E6V C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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