3M3RA

Crystal structure of the m113f alpha-hemolysin mutant complexed with beta-cyclodextrin
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
293
structure length
293
Chain Sequence
ADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYFSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWTDRSSERYKIDWEKEEMTN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell invasion
molecule keywords Alpha-hemolysin
publication title Molecular bases of cyclodextrin adapter interactions with engineered protein nanopores.
pubmed doi rcsb
source organism Staphylococcus aureus
total genus 56
structure length 293
sequence length 293
chains with identical sequence B, C, D, E, F, G
ec nomenclature
pdb deposition date 2010-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07968 Leukocidin Leukocidin/Hemolysin toxin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.240.10 Mainly Beta Distorted Sandwich Leukocidin-like Leukocidin/porin MspA 3m3rA00
4U6VA 3B07B 5K59A 1PVLA 3ANZA 3M4EA 4Q7GA 4I0NA 4P1YB 4TW1B 4IDJA 1T5RA 7AHLA 3LKFA 4IYAA 4IYCA 2QK7B 4P1XA 4IZLA 1LKFA 3ROHA 3O44A 4IYTA 5K59C 3B07A 3M3RA 4P1YA 2YGTA 3M4DA 4TW1A 2LKFA 4J0OA 3M2LA 4H56A 4P1XB 4P24A 4YHDA 2QK7A
chains in the Genus database with same CATH superfamily
4U6VA 3B07B 5K59A 1PVLA 3ANZA 3M4EA 4Q7GA 4I0NA 4P1YB 4TW1B 4IDJA 1T5RA 7AHLA 3LKFA 4IYAA 4IYCA 2QK7B 4P1XA 4IZLA 1LKFA 3ROHA 3O44A 4IYTA 5K59C 3B07A 3M3RA 4P1YA 2YGTA 3M4DA 4TW1A 1XEZA 2LKFA 4J0OA 3M2LA 4H56A 4P1XB 4P24A 4YHDA 2QK7A
chains in the Genus database with same CATH topology
4U6VA 3B07B 5K59A 1PVLA 3ANZA 3M4EA 4Q7GA 4I0NA 4P1YB 4TW1B 4IDJA 1T5RA 7AHLA 3LKFA 4IYAA 4IYCA 2QK7B 4P1XA 4IZLA 1LKFA 3ROHA 3O44A 4IYTA 5K59C 3B07A 3M3RA 4P1YA 2YGTA 3M4DA 4TW1A 2LKFA 4J0OA 3M2LA 4H56A 4P1XB 4P24A 4YHDA 2QK7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U6V A;  3B07 B;  5K59 A;  1PVL A;  3ANZ A;  3M4E A;  4Q7G A;  4I0N A;  4P1Y B;  4TW1 B;  4IDJ A;  1T5R A;  7AHL A;  3LKF A;  4IYA A;  4IYC A;  2QK7 B;  4P1X A;  4IZL A;  1LKF A;  3ROH A;  3O44 A;  4IYT A;  5K59 C;  3B07 A;  3M3R A;  4P1Y A;  2YGT A;  3M4D A;  4TW1 A;  2LKF A;  4J0O A;  3M2L A;  4H56 A;  4P1X B;  4P24 A;  4YHD A;  2QK7 A; 
#chains in the Genus database with same CATH topology
 4U6V A;  3B07 B;  5K59 A;  1PVL A;  3ANZ A;  3M4E A;  4Q7G A;  4I0N A;  4P1Y B;  4TW1 B;  4IDJ A;  1T5R A;  7AHL A;  3LKF A;  4IYA A;  4IYC A;  2QK7 B;  4P1X A;  4IZL A;  1LKF A;  3ROH A;  3O44 A;  4IYT A;  5K59 C;  3B07 A;  3M3R A;  4P1Y A;  2YGT A;  3M4D A;  4TW1 A;  1XEZ A;  2LKF A;  4J0O A;  3M2L A;  4H56 A;  4P1X B;  4P24 A;  4YHD A;  2QK7 A; 
#chains in the Genus database with same CATH homology
 4U6V A;  3B07 B;  5K59 A;  1PVL A;  3ANZ A;  3M4E A;  4Q7G A;  4I0N A;  4P1Y B;  4TW1 B;  4IDJ A;  1T5R A;  7AHL A;  3LKF A;  4IYA A;  4IYC A;  2QK7 B;  4P1X A;  4IZL A;  1LKF A;  3ROH A;  3O44 A;  4IYT A;  5K59 C;  3B07 A;  3M3R A;  4P1Y A;  2YGT A;  3M4D A;  4TW1 A;  2LKF A;  4J0O A;  3M2L A;  4H56 A;  4P1X B;  4P24 A;  4YHD A;  2QK7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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