3ME4A

Crystal structure of mouse rank
Total Genus 33
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
169
structure length
169
Chain Sequence
PPCTQERHYEHLGRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNEEDKCLLHKVCDAGKALVAVDPGNHTAPRRCACTAGYHWNSDCECCRRNTECAPGFGAQHPLQLNKDTVCTPCLLGFFSDVFSSTDKCKPWTNCTLLGKLEAHQGTTESDVVCSSSMTL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Signaling protein
molecule keywords Tumor necrosis factor receptor superfamily member 11A
publication title Structural and Functional Insights of RANKL-RANK Interaction and Signaling.
pubmed doi rcsb
source organism Mus musculus
total genus 33
structure length 169
sequence length 169
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-03-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00020 TNFR_c6 TNFR/NGFR cysteine-rich region
A PF18278 RANK_CRD_2 Receptor activator of the NF-KB cysteine-rich repeat domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 3me4A02
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 3me4A01
3U3TA 3URFZ 1EXTA 3U3SA 1JMAB 4OD2S 3U3VA 4YN0A 2H9GR 3QBQB 3X3FA 4I9XC 4BK5A 4RSUD 1SG1X 4M4RA 2HEVR 1NCFA 3BUKC 3QD6R 4J6GC 4KGQC 1D0GR 1FT4A 5DMJA 5L36B 4GIQR 4FHQA 3U3QA 4E4DR 5CIRE 3WVTA 3THMF 1TNRR 1D4VA 3FL7A 1ZA3R 3ALQR 3IJ2X 4M4PA 2UWIA 2AW2B 2X10A 3ME4A 3MBWA 3QO4A 4MXWR 3ME2R 4KGGC 3K51B 3U3PA 5IHLA 1DU3A 3TJEF 5BNQR 3MHDD 3MI8D 4MSVB 4BK4A 2HEYR 4N90R
chains in the Genus database with same CATH superfamily
3U3TA 3URFZ 1EXTA 3U3SA 1JMAB 4OD2S 3U3VA 4YN0A 2H9GR 3QBQB 3X3FA 4I9XC 4BK5A 4RSUD 1SG1X 4M4RA 2HEVR 1NCFA 3BUKC 3QD6R 4J6GC 4KGQC 1D0GR 1FT4A 5DMJA 5L36B 4GIQR 4FHQA 3U3QA 4E4DR 5CIRE 3WVTA 2E4WA 1TNRR 1D4VA 3FL7A 1ZA3R 3ALQR 2E4YA 3IJ2X 4M4PA 3THMF 2UWIA 2AW2B 2E4XA 2X10A 3MBWA 3ME4A 3QO4A 3ME2R 4KGGC 3K51B 4MXWR 3U3PA 2E4VA 5IHLA 2E4UA 2QR6A 1DU3A 3TJEF 5BNQR 3MHDD 3MI8D 4MSVB 4BK4A 2HEYR 4N90R
chains in the Genus database with same CATH topology
3U3TA 3URFZ 1EXTA 3U3SA 1JMAB 4OD2S 3U3VA 4YN0A 2H9GR 3QBQB 3X3FA 4I9XC 4BK5A 4RSUD 1SG1X 4M4RA 2HEVR 1NCFA 3BUKC 3QD6R 4J6GC 4KGQC 1D0GR 1FT4A 5DMJA 5L36B 4GIQR 4FHQA 3U3QA 4E4DR 5CIRE 3WVTA 3THMF 1TNRR 1D4VA 3FL7A 1ZA3R 3ALQR 3IJ2X 4M4PA 2UWIA 2AW2B 2X10A 3ME4A 3MBWA 3QO4A 4MXWR 3ME2R 4KGGC 3K51B 3U3PA 5IHLA 1DU3A 3TJEF 5BNQR 3MHDD 3MI8D 4MSVB 4BK4A 2HEYR 4N90R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U3T A;  3URF Z;  1EXT A;  3U3S A;  1JMA B;  4OD2 S;  3U3V A;  4YN0 A;  2H9G R;  3QBQ B;  3X3F A;  4I9X C;  4BK5 A;  4RSU D;  1SG1 X;  4M4R A;  2HEV R;  1NCF A;  3BUK C;  3QD6 R;  4J6G C;  4KGQ C;  1D0G R;  1FT4 A;  5DMJ A;  5L36 B;  4GIQ R;  4FHQ A;  3U3Q A;  4E4D R;  5CIR E;  3WVT A;  3THM F;  1TNR R;  1D4V A;  3FL7 A;  1ZA3 R;  3ALQ R;  3IJ2 X;  4M4P A;  2UWI A;  2AW2 B;  2X10 A;  3ME4 A;  3MBW A;  3QO4 A;  4MXW R;  3ME2 R;  4KGG C;  3K51 B;  3U3P A;  5IHL A;  1DU3 A;  3TJE F;  5BNQ R;  3MHD D;  3MI8 D;  4MSV B;  4BK4 A;  2HEY R;  4N90 R; 
#chains in the Genus database with same CATH topology
 3U3T A;  3URF Z;  1EXT A;  3U3S A;  1JMA B;  4OD2 S;  3U3V A;  4YN0 A;  2H9G R;  3QBQ B;  3X3F A;  4I9X C;  4BK5 A;  4RSU D;  1SG1 X;  4M4R A;  2HEV R;  1NCF A;  3BUK C;  3QD6 R;  4J6G C;  4KGQ C;  1D0G R;  1FT4 A;  5DMJ A;  5L36 B;  4GIQ R;  4FHQ A;  3U3Q A;  4E4D R;  5CIR E;  3WVT A;  2E4W A;  1TNR R;  1D4V A;  3FL7 A;  1ZA3 R;  3ALQ R;  2E4Y A;  3IJ2 X;  4M4P A;  3THM F;  2UWI A;  2AW2 B;  2E4X A;  2X10 A;  3MBW A;  3ME4 A;  3QO4 A;  3ME2 R;  4KGG C;  3K51 B;  4MXW R;  3U3P A;  2E4V A;  5IHL A;  2E4U A;  2QR6 A;  1DU3 A;  3TJE F;  5BNQ R;  3MHD D;  3MI8 D;  4MSV B;  4BK4 A;  2HEY R;  4N90 R; 
#chains in the Genus database with same CATH homology
 3U3T A;  3URF Z;  1EXT A;  3U3S A;  1JMA B;  4OD2 S;  3U3V A;  4YN0 A;  2H9G R;  3QBQ B;  3X3F A;  4I9X C;  4BK5 A;  4RSU D;  1SG1 X;  4M4R A;  2HEV R;  1NCF A;  3BUK C;  3QD6 R;  4J6G C;  4KGQ C;  1D0G R;  1FT4 A;  5DMJ A;  5L36 B;  4GIQ R;  4FHQ A;  3U3Q A;  4E4D R;  5CIR E;  3WVT A;  3THM F;  1TNR R;  1D4V A;  3FL7 A;  1ZA3 R;  3ALQ R;  3IJ2 X;  4M4P A;  2UWI A;  2AW2 B;  2X10 A;  3ME4 A;  3MBW A;  3QO4 A;  4MXW R;  3ME2 R;  4KGG C;  3K51 B;  3U3P A;  5IHL A;  1DU3 A;  3TJE F;  5BNQ R;  3MHD D;  3MI8 D;  4MSV B;  4BK4 A;  2HEY R;  4N90 R; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...