3MHSB

Structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to ubiquitin aldehyde
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
91
structure length
91
Chain Sequence
TAQLKSQIQQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEIVDT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/transcription regulator/protein binding
molecule keywords Ubiquitin carboxyl-terminal hydrolase 8
publication title Structural insights into the assembly and function of the SAGA deubiquitinating module.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 36
structure length 91
sequence length 91
ec nomenclature
pdb deposition date 2010-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF10163 EnY2 Transcription factor e(y)2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.140 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 3mhsB00
3KIKA 4FK5B 3KJLA 3FWBC 4FIPB 3FWCC 3M99C 4W4UB 4DHXB 4FJCB 4ZUXV 3MHSB 4C31B 4MBEC 4WA6B 3MHHB
chains in the Genus database with same CATH superfamily
1E7HA 2XVVA 2BXDA 2Z8JA 4TQ0A 2JUHA 2BXBA 2XW1A 4Z9OA 1HK5A 3GQUA 4OTTA 3BPJA 3A75A 4W4UB 1J7EA 2AJEA 3GQXA 3WHRA 3PLAA 3FWBC 1NT2B 2K0NA 2DG5A 1TXUA 1MA9A 2EFDA 2GUTA 2I2ZA 1MIWA 4WA6B 3H3AA 2NNWA 1TF0A 5IIUA 4ZCGA 3NVIA 4ZC6A 2LXTA 3VQIA 1H5WA 4IW2A 4ZBRA 5B5TA 2DBUA 2ROHA 3A73A 3H37A 2BXCA 4G03A 4GDKB 5D7GA 1BKEA 5IIHA 3LU6A 5GIPA 1HA2A 2E0XA 4L9QA 1HK3A 4J2VA 1LOTA 4LUHA 4L8UA 2NQOA 1SB0A 2XVQA 5GINA 3M99C 3LU8A 2AGHB 4GG2A 1KXPD 1E7AA 1UORA 2I30A 4HGKA 4D7XA 2QHBA 5IIXA 3JRYA 4JK4A 1BM0A 4LB2A 4M70B 2DBXA 2KWFA 4FIPB 4K2CA 3NVMA 4ZBQA 5IFOA 1AO6A 1GNJA 2XMOA 2BX8A 2BXIA 1HK2A 4DHXB 5IJEA 2Z8KA 4BY9C 1O9XA 3NVKA 4OR0A 3ICXA 2BXKA 3G9KD 4FK5B 5DBYA 2BXPA 3WHQA 2EFCA 2V36A 2Z8IA 5HOZA 4LA0A 3V08A 5IJ5A 4C31B 1E7GA 1HK1A 1MUHA 2LQIA 4LB9A 4F5TA 2VDBA 1FOUA 2BXLA 4F5SA 5ID9A 1MIVA 2XSIA 3B9MA 1E7EA 3JQZA 4DM0A 2XVWA 2BXEA 2QM6A 1H9ZA 2BXMA 3V09A 4L9KA 2EFHA 4Z69A 2BXOA 3SQJA 3MHHB 1MUSA 4HGMB 1E7BA 3FWCC 2KBZA 4F5VA 3V03A 1VZSA 5GHKA 2VUFA 2BXGA 3B9LA 2BXQA 2BXFA 2XW0A 1KW2A 4LUFA 2XVUA 3KJLA 4EMXA 4FJCB 1E7FA 1HK4A 4BKEA 4F5UA 2LXSA 3KIKA 1E7IA 2BXNA 1MIYA 5IJFA 1BJ5A 5BPKA 3W1SA 1LNSA 2YDFA 3UIVA 1N5UA 2BXHA 4NAWB 2DYMA 4ZUXV 3NMUA 4N3ZA 2CKXA 4N0UD 4G04A 1J78A 2EFEA 4OT2A 1E78A 4TQ1A 2DYOA 3WHSA 5GIOA 2LOQA 4I9OA 5FUOA 5DQFA 1JNBA 3CX9A 3TDLA 3ECPA 1MM8A 1KDXA 1VFIA 4E99A 3MHSB 3LU7A 4K71A 4IW1A 4OTUA 4GDLB 1GNIA 4ZBKA 2E0YA 2QMCA 4GDXA 4MBEC 4N0FD 2VUEA 3FNMA 1IJGA 5ID7A 3SIVB 1E7CA 2BXAA 2OT3A 4PO0A 3SIUB 2OZBB 2DBWA 4S1YA 3GA9L 2LQHA 4G01A
chains in the Genus database with same CATH topology
1E7HA 2XVVA 2BXDA 2Z8JA 4TQ0A 2JUHA 2BXBA 2XW1A 4Z9OA 1HK5A 3GQUA 4OTTA 3A75A 4W4UB 1J7EA 2AJEA 3GQXA 3WHRA 3PLAA 3FWBC 1NT2B 2DG5A 1TXUA 1MA9A 2EFDA 2I2ZA 1MIWA 4WA6B 3H3AA 2NNWA 1TF0A 5IIUA 4ZCGA 3NVIA 4ZC6A 3VQIA 1H5WA 4IW2A 4ZBRA 5B5TA 2DBUA 2ROHA 3A73A 3H37A 2BXCA 4G03A 4GDKB 5D7GA 1BKEA 5IIHA 3LU6A 5GIPA 1HA2A 2E0XA 4L9QA 1HK3A 4J2VA 1LOTA 4LUHA 4L8UA 2NQOA 2XVQA 5GINA 3M99C 3LU8A 4GG2A 1KXPD 1E7AA 1UORA 2I30A 4HGKA 2QHBA 5IIXA 3JRYA 4JK4A 1BM0A 4LB2A 4M70B 2DBXA 5IFOA 4FIPB 4K2CA 3NVMA 4ZBQA 1AO6A 1GNJA 2XMOA 2BX8A 2BXIA 1HK2A 4DHXB 5IJEA 2Z8KA 4BY9C 1O9XA 3NVKA 4OR0A 3ICXA 2BXKA 4FK5B 5DBYA 2BXPA 3WHQA 2EFCA 2V36A 2Z8IA 5HOZA 4LA0A 3V08A 5IJ5A 4C31B 1E7GA 1HK1A 4LB9A 4F5TA 2VDBA 1FOUA 2BXLA 4F5SA 5ID9A 1MIVA 2XSIA 3B9MA 1E7EA 3JQZA 2XVWA 2BXEA 2QM6A 1H9ZA 2BXMA 3V09A 4L9KA 2EFHA 4Z69A 2BXOA 3SQJA 3MHHB 4HGMB 1E7BA 3FWCC 2KBZA 4F5VA 3V03A 1VZSA 5GHKA 2VUFA 2BXGA 3B9LA 2BXQA 2BXFA 2XW0A 1KW2A 4LUFA 2XVUA 3KJLA 4EMXA 4FJCB 1E7FA 1HK4A 4BKEA 4F5UA 3KIKA 1E7IA 2BXNA 1MIYA 5IJFA 1BJ5A 5BPKA 3W1SA 1LNSA 2YDFA 3UIVA 1N5UA 2BXHA 4NAWB 2DYMA 4ZUXV 3NMUA 4N3ZA 2CKXA 4N0UD 4G04A 1J78A 2EFEA 4OT2A 1E78A 4TQ1A 2DYOA 3WHSA 5GIOA 2LOQA 5FUOA 5DQFA 1JNBA 3CX9A 3TDLA 1VFIA 4E99A 3MHSB 3LU7A 4K71A 4IW1A 4OTUA 4GDLB 1GNIA 4ZBKA 2E0YA 2QMCA 4GDXA 4MBEC 4N0FD 2VUEA 3FNMA 1IJGA 5ID7A 3SIVB 1E7CA 2BXAA 2OT3A 4PO0A 3SIUB 2OZBB 2DBWA 4S1YA 3GA9L 3G9KD 4G01A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KIK A;  4FK5 B;  3KJL A;  3FWB C;  4FIP B;  3FWC C;  3M99 C;  4W4U B;  4DHX B;  4FJC B;  4ZUX V;  3MHS B;  4C31 B;  4MBE C;  4WA6 B;  3MHH B; 
#chains in the Genus database with same CATH topology
 1E7H A;  2XVV A;  2BXD A;  2Z8J A;  4TQ0 A;  2JUH A;  2BXB A;  2XW1 A;  4Z9O A;  1HK5 A;  3GQU A;  4OTT A;  3BPJ A;  3A75 A;  4W4U B;  1J7E A;  2AJE A;  3GQX A;  3WHR A;  3PLA A;  3FWB C;  1NT2 B;  2K0N A;  2DG5 A;  1TXU A;  1MA9 A;  2EFD A;  2GUT A;  2I2Z A;  1MIW A;  4WA6 B;  3H3A A;  2NNW A;  1TF0 A;  5IIU A;  4ZCG A;  3NVI A;  4ZC6 A;  2LXT A;  3VQI A;  1H5W A;  4IW2 A;  4ZBR A;  5B5T A;  2DBU A;  2ROH A;  3A73 A;  3H37 A;  2BXC A;  4G03 A;  4GDK B;  5D7G A;  1BKE A;  5IIH A;  3LU6 A;  5GIP A;  1HA2 A;  2E0X A;  4L9Q A;  1HK3 A;  4J2V A;  1LOT A;  4LUH A;  4L8U A;  2NQO A;  1SB0 A;  2XVQ A;  5GIN A;  3M99 C;  3LU8 A;  2AGH B;  4GG2 A;  1KXP D;  1E7A A;  1UOR A;  2I30 A;  4HGK A;  4D7X A;  2QHB A;  5IIX A;  3JRY A;  4JK4 A;  1BM0 A;  4LB2 A;  4M70 B;  2DBX A;  2KWF A;  4FIP B;  4K2C A;  3NVM A;  4ZBQ A;  5IFO A;  1AO6 A;  1GNJ A;  2XMO A;  2BX8 A;  2BXI A;  1HK2 A;  4DHX B;  5IJE A;  2Z8K A;  4BY9 C;  1O9X A;  3NVK A;  4OR0 A;  3ICX A;  2BXK A;  3G9K D;  4FK5 B;  5DBY A;  2BXP A;  3WHQ A;  2EFC A;  2V36 A;  2Z8I A;  5HOZ A;  4LA0 A;  3V08 A;  5IJ5 A;  4C31 B;  1E7G A;  1HK1 A;  1MUH A;  2LQI A;  4LB9 A;  4F5T A;  2VDB A;  1FOU A;  2BXL A;  4F5S A;  5ID9 A;  1MIV A;  2XSI A;  3B9M A;  1E7E A;  3JQZ A;  4DM0 A;  2XVW A;  2BXE A;  2QM6 A;  1H9Z A;  2BXM A;  3V09 A;  4L9K A;  2EFH A;  4Z69 A;  2BXO A;  3SQJ A;  3MHH B;  1MUS A;  4HGM B;  1E7B A;  3FWC C;  2KBZ A;  4F5V A;  3V03 A;  1VZS A;  5GHK A;  2VUF A;  2BXG A;  3B9L A;  2BXQ A;  2BXF A;  2XW0 A;  1KW2 A;  4LUF A;  2XVU A;  3KJL A;  4EMX A;  4FJC B;  1E7F A;  1HK4 A;  4BKE A;  4F5U A;  2LXS A;  3KIK A;  1E7I A;  2BXN A;  1MIY A;  5IJF A;  1BJ5 A;  5BPK A;  3W1S A;  1LNS A;  2YDF A;  3UIV A;  1N5U A;  2BXH A;  4NAW B;  2DYM A;  4ZUX V;  3NMU A;  4N3Z A;  2CKX A;  4N0U D;  4G04 A;  1J78 A;  2EFE A;  4OT2 A;  1E78 A;  4TQ1 A;  2DYO A;  3WHS A;  5GIO A;  2LOQ A;  4I9O A;  5FUO A;  5DQF A;  1JNB A;  3CX9 A;  3TDL A;  3ECP A;  1MM8 A;  1KDX A;  1VFI A;  4E99 A;  3MHS B;  3LU7 A;  4K71 A;  4IW1 A;  4OTU A;  4GDL B;  1GNI A;  4ZBK A;  2E0Y A;  2QMC A;  4GDX A;  4MBE C;  4N0F D;  2VUE A;  3FNM A;  1IJG A;  5ID7 A;  3SIV B;  1E7C A;  2BXA A;  2OT3 A;  4PO0 A;  3SIU B;  2OZB B;  2DBW A;  4S1Y A;  3GA9 L;  2LQH A;  4G01 A; 
#chains in the Genus database with same CATH homology
 1E7H A;  2XVV A;  2BXD A;  2Z8J A;  4TQ0 A;  2JUH A;  2BXB A;  2XW1 A;  4Z9O A;  1HK5 A;  3GQU A;  4OTT A;  3A75 A;  4W4U B;  1J7E A;  2AJE A;  3GQX A;  3WHR A;  3PLA A;  3FWB C;  1NT2 B;  2DG5 A;  1TXU A;  1MA9 A;  2EFD A;  2I2Z A;  1MIW A;  4WA6 B;  3H3A A;  2NNW A;  1TF0 A;  5IIU A;  4ZCG A;  3NVI A;  4ZC6 A;  3VQI A;  1H5W A;  4IW2 A;  4ZBR A;  5B5T A;  2DBU A;  2ROH A;  3A73 A;  3H37 A;  2BXC A;  4G03 A;  4GDK B;  5D7G A;  1BKE A;  5IIH A;  3LU6 A;  5GIP A;  1HA2 A;  2E0X A;  4L9Q A;  1HK3 A;  4J2V A;  1LOT A;  4LUH A;  4L8U A;  2NQO A;  2XVQ A;  5GIN A;  3M99 C;  3LU8 A;  4GG2 A;  1KXP D;  1E7A A;  1UOR A;  2I30 A;  4HGK A;  2QHB A;  5IIX A;  3JRY A;  4JK4 A;  1BM0 A;  4LB2 A;  4M70 B;  2DBX A;  5IFO A;  4FIP B;  4K2C A;  3NVM A;  4ZBQ A;  1AO6 A;  1GNJ A;  2XMO A;  2BX8 A;  2BXI A;  1HK2 A;  4DHX B;  5IJE A;  2Z8K A;  4BY9 C;  1O9X A;  3NVK A;  4OR0 A;  3ICX A;  2BXK A;  4FK5 B;  5DBY A;  2BXP A;  3WHQ A;  2EFC A;  2V36 A;  2Z8I A;  5HOZ A;  4LA0 A;  3V08 A;  5IJ5 A;  4C31 B;  1E7G A;  1HK1 A;  4LB9 A;  4F5T A;  2VDB A;  1FOU A;  2BXL A;  4F5S A;  5ID9 A;  1MIV A;  2XSI A;  3B9M A;  1E7E A;  3JQZ A;  2XVW A;  2BXE A;  2QM6 A;  1H9Z A;  2BXM A;  3V09 A;  4L9K A;  2EFH A;  4Z69 A;  2BXO A;  3SQJ A;  3MHH B;  4HGM B;  1E7B A;  3FWC C;  2KBZ A;  4F5V A;  3V03 A;  1VZS A;  5GHK A;  2VUF A;  2BXG A;  3B9L A;  2BXQ A;  2BXF A;  2XW0 A;  1KW2 A;  4LUF A;  2XVU A;  3KJL A;  4EMX A;  4FJC B;  1E7F A;  1HK4 A;  4BKE A;  4F5U A;  3KIK A;  1E7I A;  2BXN A;  1MIY A;  5IJF A;  1BJ5 A;  5BPK A;  3W1S A;  1LNS A;  2YDF A;  3UIV A;  1N5U A;  2BXH A;  4NAW B;  2DYM A;  4ZUX V;  3NMU A;  4N3Z A;  2CKX A;  4N0U D;  4G04 A;  1J78 A;  2EFE A;  4OT2 A;  1E78 A;  4TQ1 A;  2DYO A;  3WHS A;  5GIO A;  2LOQ A;  5FUO A;  5DQF A;  1JNB A;  3CX9 A;  3TDL A;  1VFI A;  4E99 A;  3MHS B;  3LU7 A;  4K71 A;  4IW1 A;  4OTU A;  4GDL B;  1GNI A;  4ZBK A;  2E0Y A;  2QMC A;  4GDX A;  4MBE C;  4N0F D;  2VUE A;  3FNM A;  1IJG A;  5ID7 A;  3SIV B;  1E7C A;  2BXA A;  2OT3 A;  4PO0 A;  3SIU B;  2OZB B;  2DBW A;  4S1Y A;  3GA9 L;  3G9K D;  4G01 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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