3MI1M

Axial ligand swapping in double mutant maintains intradiol-cleavage chemistry in protocatechuate 3,4-dioxygenase
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
238
structure length
238
Chain Sequence
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTGPNFSHLGFGAHDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIKPGPYPWRNGPNDWRPAHIYFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEAVQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFENC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Protocatechuate 3,4-dioxygenase alpha chain
publication title Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
rcsb
source organism Pseudomonas putida
total genus 58
structure length 238
sequence length 238
chains with identical sequence N, O
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2010-04-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00775 Dioxygenase_C Dioxygenase
M PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3mi1M00
3HJQA 2PCDA 3I51A 3PCMM 2BUUA 3PCCA 3I4VA 2BUVB 1EOAB 3TH1A 1YKOB 2XSUA 3O32A 2BV0A 2BOYA 2PCDM 1EO9B 3PCGA 1YKMB 3PCCM 4WHSA 2BUZA 3MI1M 3T63A 4ILVA 2BUTB 3HJSA 1YKLB 4WHPD 3MV4A 2BUQA 2XSVA 4WHOA 1YKPB 4WHQB 4WHSD 3HKPA 3PCGM 3PCBA 1EO9A 2BUYA 3T63M 2BURB 3MV4M 3LMXM 3PCNM 2BUWA 2BUTA 3MI1A 3PCAA 1YKKA 2BUXB 3PCBM 4WHQA 4WHRB 3PCIA 3O6JA 1DLQA 2BURA 1DMHA 3PCAM 2BUVA 3PCEA 1EOAA 3HJ8A 3LMXA 3PCNA 1YKOA 1EOCB 2BUXA 3PCIM 3PCJM 4WHRA 1EO2B 4WHOD 1YKMA 3MI5A 3PCEM 4ILTA 1YKLA 3PCDA 1EOBB 1YKPA 5TD3A 3I4YA 3MI5M 3PCFA 3O5UA 3PCJA 3PCKA 2BV0B 3MV6A 3MFLA 3LXVA 3PCDM 3T67A 3LKTA 4WHPB 2XSRA 3PCLA 1TMXA 4WHSB 2BUZB 1YKNB 1EOBA 3PCFM 2BUMB 3HGIA 3PCHA 3PCKM 2BUQB 1S9AA 4WHRF 4WHOB 3MV6M 3MFLM 3O6RA 3LXVM 3N9TA 3T67M 3LKTM 1DLTA 1DLMA 3PCLM 4WHPA 3HHYA 2BUYB 2BUUB 3PCHM 1EOCA 3HHXA 3PCMA 1YKNA 2BUWB 2BUMA 2AZQA 1EO2A 1YKKB
chains in the Genus database with same CATH superfamily
3HJQA 2PCDA 3I51A 3PCMM 2BUUA 3PCCA 3I4VA 2BUVB 1EOAB 3TH1A 1YKOB 2XSUA 3O32A 2BV0A 2BOYA 2PCDM 1EO9B 3PCGA 1YKMB 3PCCM 4WHSA 2BUZA 3MI1M 3T63A 4ILVA 2BUTB 3HJSA 1YKLB 4WHPD 3MV4A 2BUQA 2XSVA 4WHOA 1YKPB 4WHQB 4WHSD 3HKPA 3PCGM 3PCBA 1EO9A 2BUYA 3T63M 2BURB 3MV4M 3LMXM 3PCNM 2BUWA 2BUTA 3MI1A 3PCAA 1YKKA 2BUXB 3PCBM 4WHQA 4WHRB 3PCIA 3O6JA 1DLQA 2BURA 1DMHA 3PCAM 2BUVA 3PCEA 1EOAA 3HJ8A 3LMXA 3PCNA 1YKOA 1EOCB 2BUXA 3PCIM 3PCJM 4WHRA 1EO2B 4WHOD 1YKMA 3MI5A 3PCEM 4ILTA 1YKLA 3PCDA 1EOBB 1YKPA 5TD3A 3I4YA 3MI5M 3PCFA 3O5UA 3PCJA 3PCKA 2BV0B 3MV6A 3MFLA 3LXVA 3PCDM 3T67A 3LKTA 4WHPB 2XSRA 3PCLA 1TMXA 4WHSB 2BUZB 1YKNB 1EOBA 3PCFM 2BUMB 3HGIA 3PCHA 3PCKM 2BUQB 1S9AA 4WHRF 4WHOB 3MV6M 3MFLM 3O6RA 3LXVM 3N9TA 3T67M 3LKTM 1DLTA 1DLMA 3PCLM 4WHPA 3HHYA 2BUYB 2BUUB 3PCHM 1EOCA 3HHXA 3PCMA 1YKNA 2BUWB 2BUMA 2AZQA 1EO2A 1YKKB
chains in the Genus database with same CATH topology
3HJQA 2PCDA 3I51A 3PCMM 2BUUA 3PCCA 3I4VA 2BUVB 1EOAB 3TH1A 1YKOB 2XSUA 3O32A 2BV0A 2BOYA 2PCDM 1EO9B 3PCGA 1YKMB 3PCCM 4WHSA 2BUZA 3MI1M 3T63A 4ILVA 2BUTB 3HJSA 1YKLB 4WHPD 3MV4A 2BUQA 2XSVA 4WHOA 1YKPB 4WHQB 4WHSD 3HKPA 3PCGM 3PCBA 1EO9A 2BUYA 3T63M 2BURB 3MV4M 3LMXM 3PCNM 2BUWA 2BUTA 3MI1A 3PCAA 1YKKA 2BUXB 3PCBM 4WHQA 4WHRB 3PCIA 3O6JA 1DLQA 2BURA 1DMHA 3PCAM 2BUVA 3PCEA 1EOAA 3HJ8A 3LMXA 3PCNA 1YKOA 1EOCB 2BUXA 3PCIM 3PCJM 4WHRA 1EO2B 4WHOD 1YKMA 3MI5A 3PCEM 4ILTA 1YKLA 3PCDA 1EOBB 1YKPA 5TD3A 3I4YA 3MI5M 3PCFA 3O5UA 3PCJA 3PCKA 2BV0B 3MV6A 3MFLA 3LXVA 3PCDM 3T67A 3LKTA 4WHPB 2XSRA 3PCLA 1TMXA 4WHSB 2BUZB 1YKNB 1EOBA 3PCFM 2BUMB 3HGIA 3PCHA 3PCKM 2BUQB 1S9AA 4WHRF 4WHOB 3MV6M 3MFLM 3O6RA 3LXVM 3N9TA 3T67M 3LKTM 1DLTA 1DLMA 3PCLM 4WHPA 3HHYA 2BUYB 2BUUB 3PCHM 1EOCA 3HHXA 3PCMA 1YKNA 2BUWB 2BUMA 2AZQA 1EO2A 1YKKB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HJQ A;  2PCD A;  3I51 A;  3PCM M;  2BUU A;  3PCC A;  3I4V A;  2BUV B;  1EOA B;  3TH1 A;  1YKO B;  2XSU A;  3O32 A;  2BV0 A;  2BOY A;  2PCD M;  1EO9 B;  3PCG A;  1YKM B;  3PCC M;  4WHS A;  2BUZ A;  3MI1 M;  3T63 A;  4ILV A;  2BUT B;  3HJS A;  1YKL B;  4WHP D;  3MV4 A;  2BUQ A;  2XSV A;  4WHO A;  1YKP B;  4WHQ B;  4WHS D;  3HKP A;  3PCG M;  3PCB A;  1EO9 A;  2BUY A;  3T63 M;  2BUR B;  3MV4 M;  3LMX M;  3PCN M;  2BUW A;  2BUT A;  3MI1 A;  3PCA A;  1YKK A;  2BUX B;  3PCB M;  4WHQ A;  4WHR B;  3PCI A;  3O6J A;  1DLQ A;  2BUR A;  1DMH A;  3PCA M;  2BUV A;  3PCE A;  1EOA A;  3HJ8 A;  3LMX A;  3PCN A;  1YKO A;  1EOC B;  2BUX A;  3PCI M;  3PCJ M;  4WHR A;  1EO2 B;  4WHO D;  1YKM A;  3MI5 A;  3PCE M;  4ILT A;  1YKL A;  3PCD A;  1EOB B;  1YKP A;  5TD3 A;  3I4Y A;  3MI5 M;  3PCF A;  3O5U A;  3PCJ A;  3PCK A;  2BV0 B;  3MV6 A;  3MFL A;  3LXV A;  3PCD M;  3T67 A;  3LKT A;  4WHP B;  2XSR A;  3PCL A;  1TMX A;  4WHS B;  2BUZ B;  1YKN B;  1EOB A;  3PCF M;  2BUM B;  3HGI A;  3PCH A;  3PCK M;  2BUQ B;  1S9A A;  4WHR F;  4WHO B;  3MV6 M;  3MFL M;  3O6R A;  3LXV M;  3N9T A;  3T67 M;  3LKT M;  1DLT A;  1DLM A;  3PCL M;  4WHP A;  3HHY A;  2BUY B;  2BUU B;  3PCH M;  1EOC A;  3HHX A;  3PCM A;  1YKN A;  2BUW B;  2BUM A;  2AZQ A;  1EO2 A;  1YKK B; 
#chains in the Genus database with same CATH topology
 3HJQ A;  2PCD A;  3I51 A;  3PCM M;  2BUU A;  3PCC A;  3I4V A;  2BUV B;  1EOA B;  3TH1 A;  1YKO B;  2XSU A;  3O32 A;  2BV0 A;  2BOY A;  2PCD M;  1EO9 B;  3PCG A;  1YKM B;  3PCC M;  4WHS A;  2BUZ A;  3MI1 M;  3T63 A;  4ILV A;  2BUT B;  3HJS A;  1YKL B;  4WHP D;  3MV4 A;  2BUQ A;  2XSV A;  4WHO A;  1YKP B;  4WHQ B;  4WHS D;  3HKP A;  3PCG M;  3PCB A;  1EO9 A;  2BUY A;  3T63 M;  2BUR B;  3MV4 M;  3LMX M;  3PCN M;  2BUW A;  2BUT A;  3MI1 A;  3PCA A;  1YKK A;  2BUX B;  3PCB M;  4WHQ A;  4WHR B;  3PCI A;  3O6J A;  1DLQ A;  2BUR A;  1DMH A;  3PCA M;  2BUV A;  3PCE A;  1EOA A;  3HJ8 A;  3LMX A;  3PCN A;  1YKO A;  1EOC B;  2BUX A;  3PCI M;  3PCJ M;  4WHR A;  1EO2 B;  4WHO D;  1YKM A;  3MI5 A;  3PCE M;  4ILT A;  1YKL A;  3PCD A;  1EOB B;  1YKP A;  5TD3 A;  3I4Y A;  3MI5 M;  3PCF A;  3O5U A;  3PCJ A;  3PCK A;  2BV0 B;  3MV6 A;  3MFL A;  3LXV A;  3PCD M;  3T67 A;  3LKT A;  4WHP B;  2XSR A;  3PCL A;  1TMX A;  4WHS B;  2BUZ B;  1YKN B;  1EOB A;  3PCF M;  2BUM B;  3HGI A;  3PCH A;  3PCK M;  2BUQ B;  1S9A A;  4WHR F;  4WHO B;  3MV6 M;  3MFL M;  3O6R A;  3LXV M;  3N9T A;  3T67 M;  3LKT M;  1DLT A;  1DLM A;  3PCL M;  4WHP A;  3HHY A;  2BUY B;  2BUU B;  3PCH M;  1EOC A;  3HHX A;  3PCM A;  1YKN A;  2BUW B;  2BUM A;  2AZQ A;  1EO2 A;  1YKK B; 
#chains in the Genus database with same CATH homology
 3HJQ A;  2PCD A;  3I51 A;  3PCM M;  2BUU A;  3PCC A;  3I4V A;  2BUV B;  1EOA B;  3TH1 A;  1YKO B;  2XSU A;  3O32 A;  2BV0 A;  2BOY A;  2PCD M;  1EO9 B;  3PCG A;  1YKM B;  3PCC M;  4WHS A;  2BUZ A;  3MI1 M;  3T63 A;  4ILV A;  2BUT B;  3HJS A;  1YKL B;  4WHP D;  3MV4 A;  2BUQ A;  2XSV A;  4WHO A;  1YKP B;  4WHQ B;  4WHS D;  3HKP A;  3PCG M;  3PCB A;  1EO9 A;  2BUY A;  3T63 M;  2BUR B;  3MV4 M;  3LMX M;  3PCN M;  2BUW A;  2BUT A;  3MI1 A;  3PCA A;  1YKK A;  2BUX B;  3PCB M;  4WHQ A;  4WHR B;  3PCI A;  3O6J A;  1DLQ A;  2BUR A;  1DMH A;  3PCA M;  2BUV A;  3PCE A;  1EOA A;  3HJ8 A;  3LMX A;  3PCN A;  1YKO A;  1EOC B;  2BUX A;  3PCI M;  3PCJ M;  4WHR A;  1EO2 B;  4WHO D;  1YKM A;  3MI5 A;  3PCE M;  4ILT A;  1YKL A;  3PCD A;  1EOB B;  1YKP A;  5TD3 A;  3I4Y A;  3MI5 M;  3PCF A;  3O5U A;  3PCJ A;  3PCK A;  2BV0 B;  3MV6 A;  3MFL A;  3LXV A;  3PCD M;  3T67 A;  3LKT A;  4WHP B;  2XSR A;  3PCL A;  1TMX A;  4WHS B;  2BUZ B;  1YKN B;  1EOB A;  3PCF M;  2BUM B;  3HGI A;  3PCH A;  3PCK M;  2BUQ B;  1S9A A;  4WHR F;  4WHO B;  3MV6 M;  3MFL M;  3O6R A;  3LXV M;  3N9T A;  3T67 M;  3LKT M;  1DLT A;  1DLM A;  3PCL M;  4WHP A;  3HHY A;  2BUY B;  2BUU B;  3PCH M;  1EOC A;  3HHX A;  3PCM A;  1YKN A;  2BUW B;  2BUM A;  2AZQ A;  1EO2 A;  1YKK B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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