3MI5A

Axial ligand swapping in double mutant maintains intradiol-cleavage chemistry in protocatechuate 3,4-dioxygenase
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
200
structure length
200
Chain Sequence
PIELLPETPSQTAGPYVHIGLALEAAGNPTRDQEIWNRLAKPDAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNAAGVPMAPHINISLFARGINIHLHTRLYFDDEAQANAKCPVLNLIEQPQRRETLIAKRCEVDGKTAYRFDIRIQGEGETVFFDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Protocatechuate 3,4-dioxygenase alpha chain
publication title Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
rcsb
source organism Pseudomonas putida
total genus 41
structure length 200
sequence length 200
chains with identical sequence B, C, D, E, F
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2010-04-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3mi5A00
3I51A 3PCDM 3MI1M 1YKOA 3O6RA 4WHOA 1EOBA 1YKLA 2BUTA 1EOAA 3PCJM 2BUQA 3PCLM 3LXVM 3PCNM 2PCDA 1YKKA 3LMXA 2BUZB 3MI5M 4WHOD 3PCIA 3PCEM 3HJQA 3PCAA 3MV6A 4WHQB 3HKPA 3LKTA 1YKPA 1YKOB 2BUYA 1EO9B 2BUXA 4WHOB 1YKLB 2BUTB 2BURB 2BUMA 3PCKA 1EOCA 3O5UA 3LXVA 3TH1A 1EOAB 2BUQB 1DMHA 1YKKB 1YKNA 3HGIA 3PCFA 3PCHM 3PCMA 2AZQA 1DLTA 2BUVA 3PCGM 1YKMB 4WHRB 1EO2A 2XSRA 3T63M 3T67M 3MV4M 3PCDA 3MI1A 3MFLM 2XSVA 3PCBM 2BUYB 3PCCM 2BOYA 1EOBB 4WHSA 2BV0A 2BUMB 2XSUA 3I4YA 3PCJA 3HHXA 3PCLA 3PCNA 3PCHA 1YKNB 3PCGA 3MI5A 2BUZA 2BUVB 3PCEA 5TD3A 4WHPA 3LMXM 3MV4A 4WHSD 2BUWA 3PCIM 4WHQA 3HHYA 3PCBA 2BUUA 3PCAM 1DLMA 3MV6M 3HJSA 4ILTA 1EO9A 3O32A 1YKPB 2BUXB 3LKTM 2BURA 4WHSB 1TMXA 2BV0B 3I4VA 1EOCB 4WHRF 3HJ8A 3PCKM 3O6JA 4WHPD 3N9TA 4ILVA 1S9AA 1DLQA 2PCDM 3PCFM 3PCMM 1YKMA 4WHPB 4WHRA 3T63A 3T67A 2BUWB 1EO2B 2BUUB 3MFLA 3PCCA
chains in the Genus database with same CATH superfamily
3I51A 3PCDM 3MI1M 1YKOA 3O6RA 4WHOA 1EOBA 1YKLA 2BUTA 1EOAA 3PCJM 2BUQA 3PCLM 3LXVM 3PCNM 2PCDA 1YKKA 3LMXA 2BUZB 3MI5M 4WHOD 3PCIA 3PCEM 3HJQA 3PCAA 3MV6A 4WHQB 3HKPA 3LKTA 1YKPA 1YKOB 2BUYA 1EO9B 2BUXA 4WHOB 1YKLB 2BUTB 2BURB 2BUMA 3PCKA 1EOCA 3O5UA 3LXVA 3TH1A 1EOAB 2BUQB 1DMHA 1YKKB 1YKNA 3HGIA 3PCFA 3PCHM 3PCMA 2AZQA 1DLTA 2BUVA 3PCGM 1YKMB 4WHRB 1EO2A 2XSRA 3T63M 3T67M 3MV4M 3PCDA 3MI1A 3MFLM 2XSVA 3PCBM 2BUYB 3PCCM 2BOYA 1EOBB 4WHSA 2BV0A 2BUMB 2XSUA 3I4YA 3PCJA 3HHXA 3PCLA 3PCNA 3PCHA 1YKNB 3PCGA 3MI5A 2BUZA 2BUVB 3PCEA 5TD3A 4WHPA 3LMXM 3MV4A 4WHSD 2BUWA 3PCIM 4WHQA 3HHYA 3PCBA 2BUUA 3PCAM 1DLMA 3MV6M 3HJSA 4ILTA 1EO9A 3O32A 1YKPB 2BUXB 3LKTM 2BURA 4WHSB 1TMXA 2BV0B 3I4VA 1EOCB 4WHRF 3HJ8A 3PCKM 3O6JA 4WHPD 3N9TA 4ILVA 1S9AA 1DLQA 2PCDM 3PCFM 3PCMM 1YKMA 4WHPB 4WHRA 3T63A 3T67A 2BUWB 1EO2B 2BUUB 3MFLA 3PCCA
chains in the Genus database with same CATH topology
3I51A 3PCDM 3MI1M 1YKOA 3O6RA 4WHOA 1EOBA 1YKLA 2BUTA 1EOAA 3PCJM 2BUQA 3PCLM 3LXVM 3PCNM 2PCDA 1YKKA 3LMXA 2BUZB 3MI5M 4WHOD 3PCIA 3PCEM 3HJQA 3PCAA 3MV6A 4WHQB 3HKPA 3LKTA 1YKPA 1YKOB 2BUYA 1EO9B 2BUXA 4WHOB 1YKLB 2BUTB 2BURB 2BUMA 3PCKA 1EOCA 3O5UA 3LXVA 3TH1A 1EOAB 2BUQB 1DMHA 1YKKB 1YKNA 3HGIA 3PCFA 3PCHM 3PCMA 2AZQA 1DLTA 2BUVA 3PCGM 1YKMB 4WHRB 1EO2A 2XSRA 3T63M 3T67M 3MV4M 3PCDA 3MI1A 3MFLM 2XSVA 3PCBM 2BUYB 3PCCM 2BOYA 1EOBB 4WHSA 2BV0A 2BUMB 2XSUA 3I4YA 3PCJA 3HHXA 3PCLA 3PCNA 3PCHA 1YKNB 3PCGA 3MI5A 2BUZA 2BUVB 3PCEA 5TD3A 4WHPA 3LMXM 3MV4A 4WHSD 2BUWA 3PCIM 4WHQA 3HHYA 3PCBA 2BUUA 3PCAM 1DLMA 3MV6M 3HJSA 4ILTA 1EO9A 3O32A 1YKPB 2BUXB 3LKTM 2BURA 4WHSB 1TMXA 2BV0B 3I4VA 1EOCB 4WHRF 3HJ8A 3PCKM 3O6JA 4WHPD 3N9TA 4ILVA 1S9AA 1DLQA 2PCDM 3PCFM 3PCMM 1YKMA 4WHPB 4WHRA 3T63A 3T67A 2BUWB 1EO2B 2BUUB 3MFLA 3PCCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I51 A;  3PCD M;  3MI1 M;  1YKO A;  3O6R A;  4WHO A;  1EOB A;  1YKL A;  2BUT A;  1EOA A;  3PCJ M;  2BUQ A;  3PCL M;  3LXV M;  3PCN M;  2PCD A;  1YKK A;  3LMX A;  2BUZ B;  3MI5 M;  4WHO D;  3PCI A;  3PCE M;  3HJQ A;  3PCA A;  3MV6 A;  4WHQ B;  3HKP A;  3LKT A;  1YKP A;  1YKO B;  2BUY A;  1EO9 B;  2BUX A;  4WHO B;  1YKL B;  2BUT B;  2BUR B;  2BUM A;  3PCK A;  1EOC A;  3O5U A;  3LXV A;  3TH1 A;  1EOA B;  2BUQ B;  1DMH A;  1YKK B;  1YKN A;  3HGI A;  3PCF A;  3PCH M;  3PCM A;  2AZQ A;  1DLT A;  2BUV A;  3PCG M;  1YKM B;  4WHR B;  1EO2 A;  2XSR A;  3T63 M;  3T67 M;  3MV4 M;  3PCD A;  3MI1 A;  3MFL M;  2XSV A;  3PCB M;  2BUY B;  3PCC M;  2BOY A;  1EOB B;  4WHS A;  2BV0 A;  2BUM B;  2XSU A;  3I4Y A;  3PCJ A;  3HHX A;  3PCL A;  3PCN A;  3PCH A;  1YKN B;  3PCG A;  3MI5 A;  2BUZ A;  2BUV B;  3PCE A;  5TD3 A;  4WHP A;  3LMX M;  3MV4 A;  4WHS D;  2BUW A;  3PCI M;  4WHQ A;  3HHY A;  3PCB A;  2BUU A;  3PCA M;  1DLM A;  3MV6 M;  3HJS A;  4ILT A;  1EO9 A;  3O32 A;  1YKP B;  2BUX B;  3LKT M;  2BUR A;  4WHS B;  1TMX A;  2BV0 B;  3I4V A;  1EOC B;  4WHR F;  3HJ8 A;  3PCK M;  3O6J A;  4WHP D;  3N9T A;  4ILV A;  1S9A A;  1DLQ A;  2PCD M;  3PCF M;  3PCM M;  1YKM A;  4WHP B;  4WHR A;  3T63 A;  3T67 A;  2BUW B;  1EO2 B;  2BUU B;  3MFL A;  3PCC A; 
#chains in the Genus database with same CATH topology
 3I51 A;  3PCD M;  3MI1 M;  1YKO A;  3O6R A;  4WHO A;  1EOB A;  1YKL A;  2BUT A;  1EOA A;  3PCJ M;  2BUQ A;  3PCL M;  3LXV M;  3PCN M;  2PCD A;  1YKK A;  3LMX A;  2BUZ B;  3MI5 M;  4WHO D;  3PCI A;  3PCE M;  3HJQ A;  3PCA A;  3MV6 A;  4WHQ B;  3HKP A;  3LKT A;  1YKP A;  1YKO B;  2BUY A;  1EO9 B;  2BUX A;  4WHO B;  1YKL B;  2BUT B;  2BUR B;  2BUM A;  3PCK A;  1EOC A;  3O5U A;  3LXV A;  3TH1 A;  1EOA B;  2BUQ B;  1DMH A;  1YKK B;  1YKN A;  3HGI A;  3PCF A;  3PCH M;  3PCM A;  2AZQ A;  1DLT A;  2BUV A;  3PCG M;  1YKM B;  4WHR B;  1EO2 A;  2XSR A;  3T63 M;  3T67 M;  3MV4 M;  3PCD A;  3MI1 A;  3MFL M;  2XSV A;  3PCB M;  2BUY B;  3PCC M;  2BOY A;  1EOB B;  4WHS A;  2BV0 A;  2BUM B;  2XSU A;  3I4Y A;  3PCJ A;  3HHX A;  3PCL A;  3PCN A;  3PCH A;  1YKN B;  3PCG A;  3MI5 A;  2BUZ A;  2BUV B;  3PCE A;  5TD3 A;  4WHP A;  3LMX M;  3MV4 A;  4WHS D;  2BUW A;  3PCI M;  4WHQ A;  3HHY A;  3PCB A;  2BUU A;  3PCA M;  1DLM A;  3MV6 M;  3HJS A;  4ILT A;  1EO9 A;  3O32 A;  1YKP B;  2BUX B;  3LKT M;  2BUR A;  4WHS B;  1TMX A;  2BV0 B;  3I4V A;  1EOC B;  4WHR F;  3HJ8 A;  3PCK M;  3O6J A;  4WHP D;  3N9T A;  4ILV A;  1S9A A;  1DLQ A;  2PCD M;  3PCF M;  3PCM M;  1YKM A;  4WHP B;  4WHR A;  3T63 A;  3T67 A;  2BUW B;  1EO2 B;  2BUU B;  3MFL A;  3PCC A; 
#chains in the Genus database with same CATH homology
 3I51 A;  3PCD M;  3MI1 M;  1YKO A;  3O6R A;  4WHO A;  1EOB A;  1YKL A;  2BUT A;  1EOA A;  3PCJ M;  2BUQ A;  3PCL M;  3LXV M;  3PCN M;  2PCD A;  1YKK A;  3LMX A;  2BUZ B;  3MI5 M;  4WHO D;  3PCI A;  3PCE M;  3HJQ A;  3PCA A;  3MV6 A;  4WHQ B;  3HKP A;  3LKT A;  1YKP A;  1YKO B;  2BUY A;  1EO9 B;  2BUX A;  4WHO B;  1YKL B;  2BUT B;  2BUR B;  2BUM A;  3PCK A;  1EOC A;  3O5U A;  3LXV A;  3TH1 A;  1EOA B;  2BUQ B;  1DMH A;  1YKK B;  1YKN A;  3HGI A;  3PCF A;  3PCH M;  3PCM A;  2AZQ A;  1DLT A;  2BUV A;  3PCG M;  1YKM B;  4WHR B;  1EO2 A;  2XSR A;  3T63 M;  3T67 M;  3MV4 M;  3PCD A;  3MI1 A;  3MFL M;  2XSV A;  3PCB M;  2BUY B;  3PCC M;  2BOY A;  1EOB B;  4WHS A;  2BV0 A;  2BUM B;  2XSU A;  3I4Y A;  3PCJ A;  3HHX A;  3PCL A;  3PCN A;  3PCH A;  1YKN B;  3PCG A;  3MI5 A;  2BUZ A;  2BUV B;  3PCE A;  5TD3 A;  4WHP A;  3LMX M;  3MV4 A;  4WHS D;  2BUW A;  3PCI M;  4WHQ A;  3HHY A;  3PCB A;  2BUU A;  3PCA M;  1DLM A;  3MV6 M;  3HJS A;  4ILT A;  1EO9 A;  3O32 A;  1YKP B;  2BUX B;  3LKT M;  2BUR A;  4WHS B;  1TMX A;  2BV0 B;  3I4V A;  1EOC B;  4WHR F;  3HJ8 A;  3PCK M;  3O6J A;  4WHP D;  3N9T A;  4ILV A;  1S9A A;  1DLQ A;  2PCD M;  3PCF M;  3PCM M;  1YKM A;  4WHP B;  4WHR A;  3T63 A;  3T67 A;  2BUW B;  1EO2 B;  2BUU B;  3MFL A;  3PCC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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