3MI8D

The structure of tl1a-dcr3 complex
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
118
structure length
109
Chain Sequence
TPTYPWRDAETGERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFFAHAGFCLEHASCGTPSQNTQC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 15, SECRETED
publication title Decoy Strategies: The Structure of TL1A:DcR3 Complex.
pubmed doi rcsb
source organism Homo sapiens
total genus 13
structure length 109
sequence length 118
ec nomenclature
pdb deposition date 2010-04-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00020 TNFR_c6 TNFR/NGFR cysteine-rich region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 3mi8D01
3.10.360.30 Alpha Beta Roll Antimicrobial Peptide, Beta-defensin 2; Chain A Antimicrobial Peptide, Beta-defensin 2; Chain A 3mi8D02
3WVTA 3X3FA 3MHDD 4M4PA 4GIQR 5L36B 4BK4A 3U3SA 4E4DR 3MBWA 4YN0A 3K51B 4KGGC 4OD2S 3QD6R 1TNRR 5CIRE 3MI8D 3BUKC 1SG1X 1DU3A 3U3TA 3IJ2X 4BK5A 3ALQR 4N90R 1NCFA 3QBQB 5BNQR 4J6GC 4MSVB 2X10A 3U3PA 4FHQA 5DMJA 2HEYR 4M4RA 1JMAB 3U3VA 2UWIA 1D4VA 2AW2B 3ME4A 3THMF 4KGQC 1EXTA 3U3QA 3URFZ 4I9XC 3ME2R 4MXWR 4RSUD 1ZA3R 1FT4A 3QO4A 3FL7A 2H9GR 2HEVR 3TJEF 5IHLA 1D0GR
chains in the Genus database with same CATH superfamily
3WVTA 3X3FA 3MHDD 4M4PA 1FD4A 4GIQR 2E4XA 5L36B 4BK4A 2LWLA 3U3SA 2LXOA 4E4DR 3MBWA 4YN0A 3K51B 4KGGC 2E4UA 3QD6R 1TNRR 4OD2S 3MI8D 5CIRE 3BUKC 1SG1X 1DU3A 3U3TA 3IJ2X 4BK5A 2E4VA 3ALQR 1NCFA 3QBQB 4N90R 5BNQR 2MJKA 1KJ6A 4J6GC 4MSVB 2X10A 3U3PA 2E4YA 4FHQA 5DMJA 2E4WA 2HEYR 4M4RA 1JMAB 3U3VA 2UWIA 1D4VA 2AW2B 3ME4A 3THMF 1FD3A 4KGQC 1EXTA 3U3QA 3URFZ 4I9XC 3ME2R 1FQQA 4MXWR 4RSUD 1ZA3R 1FT4A 3QO4A 3FL7A 2H9GR 2QR6A 2HEVR 3TJEF 5IHLA 1D0GR
chains in the Genus database with same CATH topology
3WVTA 3X3FA 3MHDD 4M4PA 1FD4A 4GIQR 5L36B 2LWLA 4BK4A 3U3SA 2LXOA 4E4DR 3MBWA 4YN0A 3K51B 4KGGC 4OD2S 3QD6R 1TNRR 5CIRE 3MI8D 3BUKC 1SG1X 1DU3A 3U3TA 3IJ2X 4BK5A 3ALQR 4N90R 1NCFA 3QBQB 5BNQR 2MJKA 1KJ6A 4J6GC 4MSVB 2X10A 3U3PA 4FHQA 5DMJA 2HEYR 4M4RA 1JMAB 3U3VA 2UWIA 1D4VA 2AW2B 3ME4A 3THMF 1FD3A 4KGQC 1EXTA 3U3QA 3URFZ 4I9XC 3ME2R 1FQQA 4MXWR 4RSUD 1ZA3R 1FT4A 3QO4A 3FL7A 2H9GR 2HEVR 3TJEF 5IHLA 1D0GR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WVT A;  3X3F A;  3MHD D;  4M4P A;  4GIQ R;  5L36 B;  4BK4 A;  3U3S A;  4E4D R;  3MBW A;  4YN0 A;  3K51 B;  4KGG C;  4OD2 S;  3QD6 R;  1TNR R;  5CIR E;  3MI8 D;  3BUK C;  1SG1 X;  1DU3 A;  3U3T A;  3IJ2 X;  4BK5 A;  3ALQ R;  4N90 R;  1NCF A;  3QBQ B;  5BNQ R;  4J6G C;  4MSV B;  2X10 A;  3U3P A;  4FHQ A;  5DMJ A;  2HEY R;  4M4R A;  1JMA B;  3U3V A;  2UWI A;  1D4V A;  2AW2 B;  3ME4 A;  3THM F;  4KGQ C;  1EXT A;  3U3Q A;  3URF Z;  4I9X C;  3ME2 R;  4MXW R;  4RSU D;  1ZA3 R;  1FT4 A;  3QO4 A;  3FL7 A;  2H9G R;  2HEV R;  3TJE F;  5IHL A;  1D0G R; 
#chains in the Genus database with same CATH topology
 3WVT A;  3X3F A;  3MHD D;  4M4P A;  1FD4 A;  4GIQ R;  2E4X A;  5L36 B;  4BK4 A;  2LWL A;  3U3S A;  2LXO A;  4E4D R;  3MBW A;  4YN0 A;  3K51 B;  4KGG C;  2E4U A;  3QD6 R;  1TNR R;  4OD2 S;  3MI8 D;  5CIR E;  3BUK C;  1SG1 X;  1DU3 A;  3U3T A;  3IJ2 X;  4BK5 A;  2E4V A;  3ALQ R;  1NCF A;  3QBQ B;  4N90 R;  5BNQ R;  2MJK A;  1KJ6 A;  4J6G C;  4MSV B;  2X10 A;  3U3P A;  2E4Y A;  4FHQ A;  5DMJ A;  2E4W A;  2HEY R;  4M4R A;  1JMA B;  3U3V A;  2UWI A;  1D4V A;  2AW2 B;  3ME4 A;  3THM F;  1FD3 A;  4KGQ C;  1EXT A;  3U3Q A;  3URF Z;  4I9X C;  3ME2 R;  1FQQ A;  4MXW R;  4RSU D;  1ZA3 R;  1FT4 A;  3QO4 A;  3FL7 A;  2H9G R;  2QR6 A;  2HEV R;  3TJE F;  5IHL A;  1D0G R; 
#chains in the Genus database with same CATH homology
 3WVT A;  3X3F A;  3MHD D;  4M4P A;  1FD4 A;  4GIQ R;  5L36 B;  2LWL A;  4BK4 A;  3U3S A;  2LXO A;  4E4D R;  3MBW A;  4YN0 A;  3K51 B;  4KGG C;  4OD2 S;  3QD6 R;  1TNR R;  5CIR E;  3MI8 D;  3BUK C;  1SG1 X;  1DU3 A;  3U3T A;  3IJ2 X;  4BK5 A;  3ALQ R;  4N90 R;  1NCF A;  3QBQ B;  5BNQ R;  2MJK A;  1KJ6 A;  4J6G C;  4MSV B;  2X10 A;  3U3P A;  4FHQ A;  5DMJ A;  2HEY R;  4M4R A;  1JMA B;  3U3V A;  2UWI A;  1D4V A;  2AW2 B;  3ME4 A;  3THM F;  1FD3 A;  4KGQ C;  1EXT A;  3U3Q A;  3URF Z;  4I9X C;  3ME2 R;  1FQQ A;  4MXW R;  4RSU D;  1ZA3 R;  1FT4 A;  3QO4 A;  3FL7 A;  2H9G R;  2HEV R;  3TJE F;  5IHL A;  1D0G R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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