3MIUA

Structure of banana lectin-pentamannose complex
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
138
structure length
138
Chain Sequence
AIKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDAVDVTFTYYGKTETRHFGGSGGTPHEIVLQEGEYLVGMKGEFGNYHGVVVVGKLGFSTNKKSYGPFGNTGGTPFSLPIAAGKISGFFGRGGDFIDAIGVYLEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords Lectin
publication title Influence of glycosidic linkage on the nature of carbohydrate binding in beta-prism I fold lectins: an X-ray and molecular dynamics investigation on banana lectin-carbohydrate complexes
pubmed doi rcsb
total genus 25
structure length 138
sequence length 138
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3miuA00
3R50A 1WS4A 5J50A 5J51A 2NU5A 1WS4C 4R6QA 3P8SA 3LM1A 3R51A 3APAA 2HYRA 2GUDA 2GUCA 2GUEA 4AKBA 1KU8A 1X1VA 1C3KA 3O44A 1UH1A 1VBOA 2BMZA 3LKYA 3MIUA 1UGYC 1XEZA 3LL0A 4R6PA 3LLZA 1PXDA 3WOCA 4PITA 1J4TA 3R52A 3WOBA 3VZGA 1OUWA 2GTYA 2BMYA 1WS5C 4R6OA 1XXRA 3VZFA 1J4UA 2GUXA 1UGYA 1UGXA 4GX7A 5BN6E 1JOTA 1UGWC 4R6NA 1ZGRA 3LL1A 3VY6A 1JACA 1ZGSA 3AQGA 1TP8A 1WS5A 4PIUA 3MITA 3LL2A 2HYQA 2BN0A 3VZEA 1UGWA 1TOQA 1C3NA 1KUJA 1UH0A 4R6RA 4WOGA 2NUOA 2JZ4A 1XXQA 4PIKA 4AKCA 5AV7A 5J4XA 1M26A 3LLYA 5JM1A 1C3MA 4MQ0A 4AKDA 4AK4A 5EXGA 3MIVA 3VY7A 1VBPA 5J4TA 4DDNA 1J4SA 4PIFA
chains in the Genus database with same CATH superfamily
4ARXA 3R50A 1WS4A 5J50A 1W99A 5J51A 2NU5A 1WS4C 3TOWA 4R6QA 3P8SA 3LM1A 3R51A 3APAA 2HYRA 1VMOA 2GUDA 2GUCA 2GUEA 4MOAA 4AKBA 1KU8A 1X1VA 4QX2A 1C3KA 3O44A 1UH1A 1VBOA 2BMZA 3LKYA 3MIUA 1UGYC 1XEZA 3LL0A 4R6PA 4QX1A 3LLZA 1PXDA 3WOCA 4PITA 1J4TA 3R52A 3WOBA 4QX0A 1JI6A 3VZGA 4D8MA 1OUWA 2GTYA 2BMYA 1WS5C 4R6OA 1XXRA 2QP2A 3VZFA 1J4UA 2GUXA 1UGYA 1UGXA 4GX7A 5BN6E 1JOTA 1UGWC 4QX3A 4R6NA 1ZGRA 2C9KA 3LL1A 3VY6A 1JACA 1ZGSA 3AQGA 1TP8A 1WS5A 4PIUA 3MITA 3LL2A 1I5PA 4ARYA 3EB7A 2HYQA 2BN0A 3VZEA 1UGWA 1TOQA 1C3NA 1KUJA 1UH0A 4W8JA 4R6RA 4WOGA 2NUOA 2JZ4A 1CIYA 1DLCA 1XXQA 4PIKA 4AKCA 5AV7A 5J4XA 1M26A 3LLYA 5JM1A 1C3MA 4MQ0A 4AKDA 4AK4A 5EXGA 3MIVA 3VY7A 1VBPA 5J4TA 4DDNA 1J4SA 4PIFA
chains in the Genus database with same CATH topology
3R50A 1WS4A 5J50A 5J51A 2NU5A 1WS4C 4R6QA 3P8SA 3LM1A 3R51A 3APAA 2HYRA 2GUDA 2GUCA 2GUEA 4AKBA 1KU8A 1X1VA 1C3KA 3O44A 1UH1A 1VBOA 2BMZA 3LKYA 3MIUA 1UGYC 1XEZA 3LL0A 4R6PA 3LLZA 1PXDA 3WOCA 4PITA 1J4TA 3R52A 3WOBA 3VZGA 1OUWA 2GTYA 2BMYA 1WS5C 4R6OA 1XXRA 3VZFA 1J4UA 2GUXA 1UGYA 1UGXA 4GX7A 5BN6E 1JOTA 1UGWC 4R6NA 1ZGRA 3LL1A 3VY6A 1JACA 1ZGSA 3AQGA 1TP8A 1WS5A 4PIUA 3MITA 3LL2A 2HYQA 2BN0A 3VZEA 1UGWA 1TOQA 1C3NA 1KUJA 1UH0A 4R6RA 4WOGA 2NUOA 2JZ4A 1XXQA 4PIKA 4AKCA 5AV7A 5J4XA 1M26A 3LLYA 5JM1A 1C3MA 4MQ0A 4AKDA 4AK4A 5EXGA 3MIVA 3VY7A 1VBPA 5J4TA 4DDNA 1J4SA 4PIFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R50 A;  1WS4 A;  5J50 A;  5J51 A;  2NU5 A;  1WS4 C;  4R6Q A;  3P8S A;  3LM1 A;  3R51 A;  3APA A;  2HYR A;  2GUD A;  2GUC A;  2GUE A;  4AKB A;  1KU8 A;  1X1V A;  1C3K A;  3O44 A;  1UH1 A;  1VBO A;  2BMZ A;  3LKY A;  3MIU A;  1UGY C;  1XEZ A;  3LL0 A;  4R6P A;  3LLZ A;  1PXD A;  3WOC A;  4PIT A;  1J4T A;  3R52 A;  3WOB A;  3VZG A;  1OUW A;  2GTY A;  2BMY A;  1WS5 C;  4R6O A;  1XXR A;  3VZF A;  1J4U A;  2GUX A;  1UGY A;  1UGX A;  4GX7 A;  5BN6 E;  1JOT A;  1UGW C;  4R6N A;  1ZGR A;  3LL1 A;  3VY6 A;  1JAC A;  1ZGS A;  3AQG A;  1TP8 A;  1WS5 A;  4PIU A;  3MIT A;  3LL2 A;  2HYQ A;  2BN0 A;  3VZE A;  1UGW A;  1TOQ A;  1C3N A;  1KUJ A;  1UH0 A;  4R6R A;  4WOG A;  2NUO A;  2JZ4 A;  1XXQ A;  4PIK A;  4AKC A;  5AV7 A;  5J4X A;  1M26 A;  3LLY A;  5JM1 A;  1C3M A;  4MQ0 A;  4AKD A;  4AK4 A;  5EXG A;  3MIV A;  3VY7 A;  1VBP A;  5J4T A;  4DDN A;  1J4S A;  4PIF A; 
#chains in the Genus database with same CATH topology
 4ARX A;  3R50 A;  1WS4 A;  5J50 A;  1W99 A;  5J51 A;  2NU5 A;  1WS4 C;  3TOW A;  4R6Q A;  3P8S A;  3LM1 A;  3R51 A;  3APA A;  2HYR A;  1VMO A;  2GUD A;  2GUC A;  2GUE A;  4MOA A;  4AKB A;  1KU8 A;  1X1V A;  4QX2 A;  1C3K A;  3O44 A;  1UH1 A;  1VBO A;  2BMZ A;  3LKY A;  3MIU A;  1UGY C;  1XEZ A;  3LL0 A;  4R6P A;  4QX1 A;  3LLZ A;  1PXD A;  3WOC A;  4PIT A;  1J4T A;  3R52 A;  3WOB A;  4QX0 A;  1JI6 A;  3VZG A;  4D8M A;  1OUW A;  2GTY A;  2BMY A;  1WS5 C;  4R6O A;  1XXR A;  2QP2 A;  3VZF A;  1J4U A;  2GUX A;  1UGY A;  1UGX A;  4GX7 A;  5BN6 E;  1JOT A;  1UGW C;  4QX3 A;  4R6N A;  1ZGR A;  2C9K A;  3LL1 A;  3VY6 A;  1JAC A;  1ZGS A;  3AQG A;  1TP8 A;  1WS5 A;  4PIU A;  3MIT A;  3LL2 A;  1I5P A;  4ARY A;  3EB7 A;  2HYQ A;  2BN0 A;  3VZE A;  1UGW A;  1TOQ A;  1C3N A;  1KUJ A;  1UH0 A;  4W8J A;  4R6R A;  4WOG A;  2NUO A;  2JZ4 A;  1CIY A;  1DLC A;  1XXQ A;  4PIK A;  4AKC A;  5AV7 A;  5J4X A;  1M26 A;  3LLY A;  5JM1 A;  1C3M A;  4MQ0 A;  4AKD A;  4AK4 A;  5EXG A;  3MIV A;  3VY7 A;  1VBP A;  5J4T A;  4DDN A;  1J4S A;  4PIF A; 
#chains in the Genus database with same CATH homology
 3R50 A;  1WS4 A;  5J50 A;  5J51 A;  2NU5 A;  1WS4 C;  4R6Q A;  3P8S A;  3LM1 A;  3R51 A;  3APA A;  2HYR A;  2GUD A;  2GUC A;  2GUE A;  4AKB A;  1KU8 A;  1X1V A;  1C3K A;  3O44 A;  1UH1 A;  1VBO A;  2BMZ A;  3LKY A;  3MIU A;  1UGY C;  1XEZ A;  3LL0 A;  4R6P A;  3LLZ A;  1PXD A;  3WOC A;  4PIT A;  1J4T A;  3R52 A;  3WOB A;  3VZG A;  1OUW A;  2GTY A;  2BMY A;  1WS5 C;  4R6O A;  1XXR A;  3VZF A;  1J4U A;  2GUX A;  1UGY A;  1UGX A;  4GX7 A;  5BN6 E;  1JOT A;  1UGW C;  4R6N A;  1ZGR A;  3LL1 A;  3VY6 A;  1JAC A;  1ZGS A;  3AQG A;  1TP8 A;  1WS5 A;  4PIU A;  3MIT A;  3LL2 A;  2HYQ A;  2BN0 A;  3VZE A;  1UGW A;  1TOQ A;  1C3N A;  1KUJ A;  1UH0 A;  4R6R A;  4WOG A;  2NUO A;  2JZ4 A;  1XXQ A;  4PIK A;  4AKC A;  5AV7 A;  5J4X A;  1M26 A;  3LLY A;  5JM1 A;  1C3M A;  4MQ0 A;  4AKD A;  4AK4 A;  5EXG A;  3MIV A;  3VY7 A;  1VBP A;  5J4T A;  4DDN A;  1J4S A;  4PIF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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