3MJIA

Activation of catalytic cysteine without a base in a mutant penicillin acylase precursor
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
334
structure length
334
Chain Sequence
MLGSSSLSIRTTDDKSLFARTMDFTMEPDSKVIIVPRNYGIRLLEKENVVINNSYAFVGMGSTDITSPVLYDGVNEKGLMGAMLYYATFATYADEPKKGTRGINPVYVISQVLGNCVTVDDVIEKLTSYTLLNEANIILGFAPPLHYTFTDASGESIVIEPDKTGITIHRKTIGVMTNSPGYEWHQTNLRAYIGVTPNPPQDIMMGDLDLTPFGQGAGGLGLPGDFTPSARFLRVAYWKKYTEKAKNETEGVTNLFHILSSVNIPKGVVLTNEGKTDYTIYTSAMCAQSKNYYFKLYDNSRISAVSLMAENLNSQDLITFEWDRKQDIKQLNQV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Penicillin acylase
publication title Activation of catalytic cysteine without a base in a Mutant Penicillin Acylase Precursor
rcsb
source organism Bacillus sphaericus
total genus 98
structure length 334
sequence length 334
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.11: Penicillin amidase.
pdb deposition date 2010-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02275 CBAH Linear amide C-N hydrolases, choloylglycine hydrolase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.60.10 Alpha Beta 4-Layer Sandwich Penicillin V Acylase; Chain A Penicillin V Acylase; Chain A 3mjiA00
2BJFA 3PVAA 2IWMA 2PVAA 5HKEA 4WL2A 2BJGA 2RG2A 2RLCA 2RF8A 2HF0A 4WL3A 3GVZA 2X1DA 2X1CA 3HBCA 2Z71A 2OQCA 2HEZA 3MJIA 2QUYA 2X1EA
chains in the Genus database with same CATH superfamily
2BJFA 3PVAA 2IWMA 2PVAA 5HKEA 4WL2A 2BJGA 3FBXA 3FGRB 2RG2A 2RLCA 3FGTB 2RF8A 4BWCB 2HF0A 4WL3A 3GVZA 2X1DA 2X1CA 3HBCA 3FGWA 2Z71A 2OQCA 2HEZA 3MJIA 2QUYA 2X1EA
chains in the Genus database with same CATH topology
2BJFA 3PVAA 2IWMA 2PVAA 5HKEA 4WL2A 2BJGA 3FBXA 3FGRB 2RG2A 2RLCA 3FGTB 2RF8A 4BWCB 2HF0A 4WL3A 3GVZA 2X1DA 2X1CA 3HBCA 3FGWA 2Z71A 2OQCA 2HEZA 3MJIA 2QUYA 2X1EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BJF A;  3PVA A;  2IWM A;  2PVA A;  5HKE A;  4WL2 A;  2BJG A;  2RG2 A;  2RLC A;  2RF8 A;  2HF0 A;  4WL3 A;  3GVZ A;  2X1D A;  2X1C A;  3HBC A;  2Z71 A;  2OQC A;  2HEZ A;  3MJI A;  2QUY A;  2X1E A; 
#chains in the Genus database with same CATH topology
 2BJF A;  3PVA A;  2IWM A;  2PVA A;  5HKE A;  4WL2 A;  2BJG A;  3FBX A;  3FGR B;  2RG2 A;  2RLC A;  3FGT B;  2RF8 A;  4BWC B;  2HF0 A;  4WL3 A;  3GVZ A;  2X1D A;  2X1C A;  3HBC A;  3FGW A;  2Z71 A;  2OQC A;  2HEZ A;  3MJI A;  2QUY A;  2X1E A; 
#chains in the Genus database with same CATH homology
 2BJF A;  3PVA A;  2IWM A;  2PVA A;  5HKE A;  4WL2 A;  2BJG A;  3FBX A;  3FGR B;  2RG2 A;  2RLC A;  3FGT B;  2RF8 A;  4BWC B;  2HF0 A;  4WL3 A;  3GVZ A;  2X1D A;  2X1C A;  3HBC A;  3FGW A;  2Z71 A;  2OQC A;  2HEZ A;  3MJI A;  2QUY A;  2X1E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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