3MJKA

Structure of a growth factor precursor
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
159
structure length
129
Chain Sequence
EAEIPREVIERLARSQIHSIRDLQRLLEIDSVRRKRIEEAVPAVCKTRTVIYEIPRSQVDPTSANFLIWPPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEHLECACA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hormone
molecule keywords Platelet-derived growth factor subunit A
publication title Structures of a platelet-derived growth factor/propeptide complex and a platelet-derived growth factor/receptor complex.
pubmed doi rcsb
source organism Homo sapiens
total genus 18
structure length 129
sequence length 159
chains with identical sequence B, E, F, X, Y
ec nomenclature
pdb deposition date 2010-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00341 PDGF PDGF/VEGF domain
A PF04692 PDGF_N Platelet-derived growth factor, N terminal region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 3mjkA00
4N1DA 4FAOA 5HI4A 5FV2V 2ARPA 2VPFA 1M4UA 4YCGC 1MJVA 4YCIC 1AGQA 1BJ1V 2TGIA 3FUBB 5HK5E 1MKGA 1FL7A 1XWDB 3V2AA 5HHCA 1PDGA 2GOOA 4UI1A 5BQ8D 4HQUA 2FJHV 5HHDA 5HI5A 3BDYV 1RV6V 2QJ9A 1KLAA 1TZHV 1HCFA 4HSAA 4AY9A 5BQEA 5F3BC 5JZ7A 2V5EB 4MQWB 1LXIA 1B98A 2X1XE 3HH2A 4HR9A 1BNDA 1HRPA 3E07A 2KD3A 5HHXA 2QR0C 1CZ8V 3BK3A 3BUKA 2GH0C 5BQCA 1DZ7A 4GLSE 4MIDA 1B8MA 1REUA 1B8KA 2VXSA 4EC7A 4EAXA 1WAQA 1S4YB 2FJGV 4LXSJ 1QFWB 1WQ9A 1KATW 2B0UA 3BMPA 5AEJA 2GNNA 3V6BA 1BMPA 4UI0A 1NYSB 2R52A 4KV5A 4ZFFC 1HCNB 1QTYR 1TFGA 1M4UL 1XWDA 4QAFC 1FZVA 1BETA 4EFVA 1MKKA 5BPUA 4MPLA 2XACA 4QHUC 2QJBA 4WPBA 3MJGA 5BQ8B 4QCIC 1NT3A 5HK5A 2VWEA 3S1BV 1TGKA 4KXZA 1HD4A 2PJYA 1BTGA 3P9WA 1REWA 2IFGE 1WWWV 4EDWV 3MJKA 4UHYA 4XPJA 2XV7A 1BNDB 1HRPB 3KFDA 4MQWA 5BQBA 4BV4L 1SGFB 3B4VA 1JPYA 1B8MB 4UHZA 2BHKA 3RJRA 2ARVA 1FL7B 3S1KV 2QJAA 4UI2B 1NYUB 1WQ9B 5HI3A 1VPFA 1QFWA 1LX5A 1SG1A 2QCWA 5HHVA 4AY9B 2GYRA 5BQEB 4X1JA 5E4GA 1VPPV 2H64A 3EVSB 2ASKA 4ZBNA 1ZKZA 1KLCA 3SEKB 1HCNA 4EDXV 2R53A 4KZNA 5F3HI 4HQXA 2X1WA 2GYZA 1FLTV 2P6AA 2C7WA 4GLNE 3QB4A 2H62A 3EO1C 1WQ8A 3IJ2A 1TGJA 5BQ8A 1KTZA 3QTKA 1E9JA 4LXRJ 1TZIV 1ES7A 3JVFA 1AOCA 5FV1V 2QCQA
chains in the Genus database with same CATH superfamily
4N1DA 4FAOA 5HI4A 5FV2V 2ARPA 2VPFA 1M4UA 4YCGC 1MJVA 4YCIC 1AGQA 1BJ1V 2TGIA 3FUBB 5HK5E 1MKGA 1FL7A 1XWDB 3V2AA 5HHCA 1PDGA 2GOOA 4UI1A 5BQ8D 4HQUA 2FJHV 5HHDA 5HI5A 3BDYV 1RV6V 2QJ9A 1KLAA 1TZHV 1HCFA 4HSAA 4AY9A 5BQEA 5F3BC 5JZ7A 2V5EB 4MQWB 1LXIA 1B98A 2X1XE 3HH2A 4HR9A 1BNDA 1HRPA 3E07A 2KD3A 5HHXA 2QR0C 1CZ8V 3BK3A 3BUKA 2GH0C 5BQCA 1DZ7A 4GLSE 4MIDA 1B8MA 1REUA 1B8KA 2VXSA 4EC7A 4EAXA 1WAQA 1S4YB 2FJGV 4LXSJ 1QFWB 1WQ9A 1KATW 2B0UA 3BMPA 5AEJA 2GNNA 3V6BA 1BMPA 4UI0A 1NYSB 2R52A 4KV5A 4ZFFC 1HCNB 1QTYR 1TFGA 1M4UL 1XWDA 4QAFC 1FZVA 1BETA 4EFVA 1MKKA 5BPUA 4MPLA 2XACA 4QHUC 2QJBA 4WPBA 3MJGA 5BQ8B 4QCIC 1NT3A 5HK5A 2VWEA 3S1BV 1TGKA 4KXZA 1HD4A 2PJYA 1BTGA 3P9WA 1REWA 2IFGE 1WWWV 4EDWV 3MJKA 4UHYA 4XPJA 2XV7A 1BNDB 1HRPB 3KFDA 4MQWA 5BQBA 4BV4L 1SGFB 3B4VA 1JPYA 1B8MB 4UHZA 2BHKA 3RJRA 2ARVA 1FL7B 3S1KV 2QJAA 4UI2B 1NYUB 1WQ9B 5HI3A 1VPFA 1QFWA 1LX5A 1SG1A 2QCWA 5HHVA 4AY9B 2GYRA 5BQEB 4X1JA 5E4GA 1VPPV 2H64A 3EVSB 2ASKA 4ZBNA 1ZKZA 1KLCA 3SEKB 1HCNA 4EDXV 2R53A 4KZNA 5F3HI 4HQXA 2X1WA 2GYZA 1FLTV 2P6AA 2C7WA 4GLNE 3QB4A 2H62A 3EO1C 1WQ8A 3IJ2A 1TGJA 5BQ8A 1KTZA 3QTKA 1E9JA 4LXRJ 1TZIV 1ES7A 3JVFA 1AOCA 5FV1V 2QCQA
chains in the Genus database with same CATH topology
4N1DA 4FAOA 5HI4A 5FV2V 2ARPA 2VPFA 1M4UA 4YCGC 1MJVA 4YCIC 1AGQA 1BJ1V 2TGIA 3FUBB 5HK5E 1MKGA 1FL7A 1XWDB 3V2AA 5HHCA 1PDGA 2GOOA 4UI1A 5BQ8D 4HQUA 2FJHV 5HHDA 5HI5A 3BDYV 1RV6V 2QJ9A 1KLAA 1TZHV 1HCFA 4HSAA 4AY9A 5BQEA 5F3BC 5JZ7A 2V5EB 4MQWB 1LXIA 1B98A 2X1XE 3HH2A 4HR9A 1BNDA 1HRPA 3E07A 2KD3A 5HHXA 2QR0C 1CZ8V 3BK3A 3BUKA 2GH0C 5BQCA 1DZ7A 4GLSE 4MIDA 1B8MA 1REUA 1B8KA 2VXSA 4EC7A 4EAXA 1WAQA 1S4YB 2FJGV 4LXSJ 1QFWB 1WQ9A 1KATW 2B0UA 3BMPA 5AEJA 2GNNA 3V6BA 1BMPA 4UI0A 1NYSB 2R52A 4KV5A 4ZFFC 1HCNB 1QTYR 1TFGA 1M4UL 1XWDA 4QAFC 1FZVA 1BETA 4EFVA 1MKKA 5BPUA 4MPLA 2XACA 4QHUC 2QJBA 4WPBA 3MJGA 5BQ8B 4QCIC 1NT3A 5HK5A 2VWEA 3S1BV 1TGKA 4KXZA 1HD4A 2PJYA 1BTGA 3P9WA 1REWA 2IFGE 1WWWV 4EDWV 3MJKA 4UHYA 4XPJA 2XV7A 1BNDB 1HRPB 3KFDA 4MQWA 5BQBA 4BV4L 1SGFB 3B4VA 1JPYA 1B8MB 4UHZA 2BHKA 3RJRA 2ARVA 1FL7B 3S1KV 2QJAA 4UI2B 1NYUB 1WQ9B 5HI3A 1VPFA 1QFWA 1LX5A 1SG1A 2QCWA 5HHVA 4AY9B 2GYRA 5BQEB 4X1JA 5E4GA 1VPPV 2H64A 3EVSB 2ASKA 4ZBNA 1ZKZA 1KLCA 3SEKB 1HCNA 4EDXV 2R53A 4KZNA 5F3HI 4HQXA 2X1WA 2GYZA 1FLTV 2P6AA 2C7WA 4GLNE 3QB4A 2H62A 3EO1C 1WQ8A 3IJ2A 1TGJA 5BQ8A 1KTZA 3QTKA 1E9JA 4LXRJ 1TZIV 1ES7A 3JVFA 1AOCA 5FV1V 2QCQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4N1D A;  4FAO A;  5HI4 A;  5FV2 V;  2ARP A;  2VPF A;  1M4U A;  4YCG C;  1MJV A;  4YCI C;  1AGQ A;  1BJ1 V;  2TGI A;  3FUB B;  5HK5 E;  1MKG A;  1FL7 A;  1XWD B;  3V2A A;  5HHC A;  1PDG A;  2GOO A;  4UI1 A;  5BQ8 D;  4HQU A;  2FJH V;  5HHD A;  5HI5 A;  3BDY V;  1RV6 V;  2QJ9 A;  1KLA A;  1TZH V;  1HCF A;  4HSA A;  4AY9 A;  5BQE A;  5F3B C;  5JZ7 A;  2V5E B;  4MQW B;  1LXI A;  1B98 A;  2X1X E;  3HH2 A;  4HR9 A;  1BND A;  1HRP A;  3E07 A;  2KD3 A;  5HHX A;  2QR0 C;  1CZ8 V;  3BK3 A;  3BUK A;  2GH0 C;  5BQC A;  1DZ7 A;  4GLS E;  4MID A;  1B8M A;  1REU A;  1B8K A;  2VXS A;  4EC7 A;  4EAX A;  1WAQ A;  1S4Y B;  2FJG V;  4LXS J;  1QFW B;  1WQ9 A;  1KAT W;  2B0U A;  3BMP A;  5AEJ A;  2GNN A;  3V6B A;  1BMP A;  4UI0 A;  1NYS B;  2R52 A;  4KV5 A;  4ZFF C;  1HCN B;  1QTY R;  1TFG A;  1M4U L;  1XWD A;  4QAF C;  1FZV A;  1BET A;  4EFV A;  1MKK A;  5BPU A;  4MPL A;  2XAC A;  4QHU C;  2QJB A;  4WPB A;  3MJG A;  5BQ8 B;  4QCI C;  1NT3 A;  5HK5 A;  2VWE A;  3S1B V;  1TGK A;  4KXZ A;  1HD4 A;  2PJY A;  1BTG A;  3P9W A;  1REW A;  2IFG E;  1WWW V;  4EDW V;  3MJK A;  4UHY A;  4XPJ A;  2XV7 A;  1BND B;  1HRP B;  3KFD A;  4MQW A;  5BQB A;  4BV4 L;  1SGF B;  3B4V A;  1JPY A;  1B8M B;  4UHZ A;  2BHK A;  3RJR A;  2ARV A;  1FL7 B;  3S1K V;  2QJA A;  4UI2 B;  1NYU B;  1WQ9 B;  5HI3 A;  1VPF A;  1QFW A;  1LX5 A;  1SG1 A;  2QCW A;  5HHV A;  4AY9 B;  2GYR A;  5BQE B;  4X1J A;  5E4G A;  1VPP V;  2H64 A;  3EVS B;  2ASK A;  4ZBN A;  1ZKZ A;  1KLC A;  3SEK B;  1HCN A;  4EDX V;  2R53 A;  4KZN A;  5F3H I;  4HQX A;  2X1W A;  2GYZ A;  1FLT V;  2P6A A;  2C7W A;  4GLN E;  3QB4 A;  2H62 A;  3EO1 C;  1WQ8 A;  3IJ2 A;  1TGJ A;  5BQ8 A;  1KTZ A;  3QTK A;  1E9J A;  4LXR J;  1TZI V;  1ES7 A;  3JVF A;  1AOC A;  5FV1 V;  2QCQ A; 
#chains in the Genus database with same CATH topology
 4N1D A;  4FAO A;  5HI4 A;  5FV2 V;  2ARP A;  2VPF A;  1M4U A;  4YCG C;  1MJV A;  4YCI C;  1AGQ A;  1BJ1 V;  2TGI A;  3FUB B;  5HK5 E;  1MKG A;  1FL7 A;  1XWD B;  3V2A A;  5HHC A;  1PDG A;  2GOO A;  4UI1 A;  5BQ8 D;  4HQU A;  2FJH V;  5HHD A;  5HI5 A;  3BDY V;  1RV6 V;  2QJ9 A;  1KLA A;  1TZH V;  1HCF A;  4HSA A;  4AY9 A;  5BQE A;  5F3B C;  5JZ7 A;  2V5E B;  4MQW B;  1LXI A;  1B98 A;  2X1X E;  3HH2 A;  4HR9 A;  1BND A;  1HRP A;  3E07 A;  2KD3 A;  5HHX A;  2QR0 C;  1CZ8 V;  3BK3 A;  3BUK A;  2GH0 C;  5BQC A;  1DZ7 A;  4GLS E;  4MID A;  1B8M A;  1REU A;  1B8K A;  2VXS A;  4EC7 A;  4EAX A;  1WAQ A;  1S4Y B;  2FJG V;  4LXS J;  1QFW B;  1WQ9 A;  1KAT W;  2B0U A;  3BMP A;  5AEJ A;  2GNN A;  3V6B A;  1BMP A;  4UI0 A;  1NYS B;  2R52 A;  4KV5 A;  4ZFF C;  1HCN B;  1QTY R;  1TFG A;  1M4U L;  1XWD A;  4QAF C;  1FZV A;  1BET A;  4EFV A;  1MKK A;  5BPU A;  4MPL A;  2XAC A;  4QHU C;  2QJB A;  4WPB A;  3MJG A;  5BQ8 B;  4QCI C;  1NT3 A;  5HK5 A;  2VWE A;  3S1B V;  1TGK A;  4KXZ A;  1HD4 A;  2PJY A;  1BTG A;  3P9W A;  1REW A;  2IFG E;  1WWW V;  4EDW V;  3MJK A;  4UHY A;  4XPJ A;  2XV7 A;  1BND B;  1HRP B;  3KFD A;  4MQW A;  5BQB A;  4BV4 L;  1SGF B;  3B4V A;  1JPY A;  1B8M B;  4UHZ A;  2BHK A;  3RJR A;  2ARV A;  1FL7 B;  3S1K V;  2QJA A;  4UI2 B;  1NYU B;  1WQ9 B;  5HI3 A;  1VPF A;  1QFW A;  1LX5 A;  1SG1 A;  2QCW A;  5HHV A;  4AY9 B;  2GYR A;  5BQE B;  4X1J A;  5E4G A;  1VPP V;  2H64 A;  3EVS B;  2ASK A;  4ZBN A;  1ZKZ A;  1KLC A;  3SEK B;  1HCN A;  4EDX V;  2R53 A;  4KZN A;  5F3H I;  4HQX A;  2X1W A;  2GYZ A;  1FLT V;  2P6A A;  2C7W A;  4GLN E;  3QB4 A;  2H62 A;  3EO1 C;  1WQ8 A;  3IJ2 A;  1TGJ A;  5BQ8 A;  1KTZ A;  3QTK A;  1E9J A;  4LXR J;  1TZI V;  1ES7 A;  3JVF A;  1AOC A;  5FV1 V;  2QCQ A; 
#chains in the Genus database with same CATH homology
 4N1D A;  4FAO A;  5HI4 A;  5FV2 V;  2ARP A;  2VPF A;  1M4U A;  4YCG C;  1MJV A;  4YCI C;  1AGQ A;  1BJ1 V;  2TGI A;  3FUB B;  5HK5 E;  1MKG A;  1FL7 A;  1XWD B;  3V2A A;  5HHC A;  1PDG A;  2GOO A;  4UI1 A;  5BQ8 D;  4HQU A;  2FJH V;  5HHD A;  5HI5 A;  3BDY V;  1RV6 V;  2QJ9 A;  1KLA A;  1TZH V;  1HCF A;  4HSA A;  4AY9 A;  5BQE A;  5F3B C;  5JZ7 A;  2V5E B;  4MQW B;  1LXI A;  1B98 A;  2X1X E;  3HH2 A;  4HR9 A;  1BND A;  1HRP A;  3E07 A;  2KD3 A;  5HHX A;  2QR0 C;  1CZ8 V;  3BK3 A;  3BUK A;  2GH0 C;  5BQC A;  1DZ7 A;  4GLS E;  4MID A;  1B8M A;  1REU A;  1B8K A;  2VXS A;  4EC7 A;  4EAX A;  1WAQ A;  1S4Y B;  2FJG V;  4LXS J;  1QFW B;  1WQ9 A;  1KAT W;  2B0U A;  3BMP A;  5AEJ A;  2GNN A;  3V6B A;  1BMP A;  4UI0 A;  1NYS B;  2R52 A;  4KV5 A;  4ZFF C;  1HCN B;  1QTY R;  1TFG A;  1M4U L;  1XWD A;  4QAF C;  1FZV A;  1BET A;  4EFV A;  1MKK A;  5BPU A;  4MPL A;  2XAC A;  4QHU C;  2QJB A;  4WPB A;  3MJG A;  5BQ8 B;  4QCI C;  1NT3 A;  5HK5 A;  2VWE A;  3S1B V;  1TGK A;  4KXZ A;  1HD4 A;  2PJY A;  1BTG A;  3P9W A;  1REW A;  2IFG E;  1WWW V;  4EDW V;  3MJK A;  4UHY A;  4XPJ A;  2XV7 A;  1BND B;  1HRP B;  3KFD A;  4MQW A;  5BQB A;  4BV4 L;  1SGF B;  3B4V A;  1JPY A;  1B8M B;  4UHZ A;  2BHK A;  3RJR A;  2ARV A;  1FL7 B;  3S1K V;  2QJA A;  4UI2 B;  1NYU B;  1WQ9 B;  5HI3 A;  1VPF A;  1QFW A;  1LX5 A;  1SG1 A;  2QCW A;  5HHV A;  4AY9 B;  2GYR A;  5BQE B;  4X1J A;  5E4G A;  1VPP V;  2H64 A;  3EVS B;  2ASK A;  4ZBN A;  1ZKZ A;  1KLC A;  3SEK B;  1HCN A;  4EDX V;  2R53 A;  4KZN A;  5F3H I;  4HQX A;  2X1W A;  2GYZ A;  1FLT V;  2P6A A;  2C7W A;  4GLN E;  3QB4 A;  2H62 A;  3EO1 C;  1WQ8 A;  3IJ2 A;  1TGJ A;  5BQ8 A;  1KTZ A;  3QTK A;  1E9J A;  4LXR J;  1TZI V;  1ES7 A;  3JVF A;  1AOC A;  5FV1 V;  2QCQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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