3MKSA

Crystal structure of yeast cdc4/skp1 in complex with an allosteric inhibitor scf-i2
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
154
structure length
134
Chain Sequence
SNVVLVSGEGERFTVDKKIAERSLLLKNYEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase/cell cycle
molecule keywords Suppressor of kinetochore protein 1
publication title An allosteric inhibitor of substrate recognition by the SCF(Cdc4) ubiquitin ligase.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 39
structure length 134
sequence length 154
chains with identical sequence C
ec nomenclature
pdb deposition date 2010-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01466 Skp1 Skp1 family, dimerisation domain
A PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 3mksA00
5DADA 4W9DB 2P1QA 3C6OA 1A68A 1R29A 2P1PA 4B9KB 4W9IB 5H7HA 3ZTCB 1R2BA 2P1NA 5DAFA 3KVTA 4I6JC 2JZ3C 5BXHA 3OHUA 3DCGB 3OHVA 2OVQA 4W9LB 5LLIB 4HXIA 4W9GB 3ZNGB 2OVRA 2PPIA 3BIMA 1VCBB 1LM8C 4CXTA 1EODA 3M52A 4UIJA 4WQOC 1FQVB 2P1MA 2VPKA 3C6PA 3OGLA 4U77A 2R9RB 1HV2A 5H7GA 1LDKD 4N9F5 1FS1B 4APFA 4W9HH 3OGMA 2NZ0B 2E31B 4CRHA 4JGHC 1R28A 2A79B 3MKSA 3ZRFB 1QDVA 4U2MA 2FNJC 1EOFA 4W9JB 5HYWB 1FS2B 2MA9C 4U2NA 2I2RA 4J8ZA 5A15A 2NN2A 2OVPA 4W9HB 3HU6A 5FTAA 3GA1A 4JTCB 1CS3A 3HVEA 5HZGC 3ZTDB 1EOEA 4CXJA 3DRZA 2C9WC 2P1OA 3B84A 1LQBB 1EXBE 5EUPA 4AP2A 4BKTB 4W9FB 3HQIA 5A6RA 5JH5B 3E4UA 2VKPA 3HTMA 3C6NA 4BKSB 3LBZA 3ZUNB 3L2OA 1NN7A 4UYIA 1QDWA 4AJYC 3HVEB 2Q81A 2IHCA 1BUOA 3LNMB 1DSXA 5BO4C 4CXIA 5BXBA 1P22B 2Z8HA 4B9KE 2YY9A 3M5BA 4JTDB 3M4TA 5BXDA 2IZVC 3OGKA 1S1GA 2IF5A 2E32B 1T1DA 4CP3A 3LUTB 4BGCA 3FKCA 1NEXA 3ZKJB 4AWJB 3M8VA 4B95B 3V7DA 4W9EB 4EOZA 4W9KB 3WSOB 4JTAB 2ASSA 3I3NA 3ZRCB 5IBKA 4ZOUA 2ASTA 4W9CB
chains in the Genus database with same CATH superfamily
5DADA 4W9DB 2P1QA 3C6OA 1A68A 1R29A 2P1PA 4B9KB 4W9IB 5H7HA 3ZTCB 1R2BA 2P1NA 5DAFA 3KVTA 4I6JC 2JZ3C 5BXHA 3OHUA 3DCGB 3OHVA 2OVQA 4W9LB 5LLIB 4HXIA 4W9GB 3ZNGB 2OVRA 2PPIA 3BIMA 1VCBB 1LM8C 4CXTA 1EODA 3M52A 4UIJA 4WQOC 1FQVB 2P1MA 2VPKA 3C6PA 3OGLA 4U77A 2R9RB 1HV2A 5H7GA 1LDKD 4N9F5 1FS1B 4APFA 4W9HH 3OGMA 2NZ0B 2E31B 4CRHA 4JGHC 1R28A 2A79B 3MKSA 3ZRFB 1QDVA 4U2MA 2FNJC 1EOFA 4W9JB 5HYWB 4ZGCA 1FS2B 2MA9C 4U2NA 2I2RA 4J8ZA 5A15A 2NN2A 2OVPA 4W9HB 3HU6A 5FTAA 3GA1A 4JTCB 1CS3A 3HVEA 5HZGC 3ZTDB 1EOEA 4CXJA 3DRZA 2C9WC 2P1OA 3B84A 1LQBB 1EXBE 3DRXA 5EUPA 4AP2A 4BKTB 4W9FB 3HQIA 5A6RA 5JH5B 3E4UA 2VKPA 3HTMA 3C6NA 4BKSB 3LBZA 3ZUNB 3L2OA 1NN7A 4UYIA 1QDWA 4AJYC 3HVEB 3DRYA 2Q81A 2IHCA 1BUOA 3LNMB 1DSXA 5BO4C 4CXIA 5BXBA 1P22B 2Z8HA 4B9KE 2YY9A 3M5BA 4JTDB 3M4TA 5BXDA 2IZVC 3OGKA 1S1GA 2IF5A 2E32B 1T1DA 4CP3A 3LUTB 4BGCA 3FKCA 1NEXA 3ZKJB 4AWJB 3M8VA 4B95B 4YY8A 3V7DA 4W9EB 4EOZA 4W9KB 3WSOB 4JTAB 2ASSA 3I3NA 3ZRCB 5IBKA 4ZOUA 2ASTA 4W9CB
chains in the Genus database with same CATH topology
5DADA 4W9DB 2P1QA 3C6OA 1A68A 1R29A 2P1PA 4B9KB 4W9IB 5H7HA 3ZTCB 1R2BA 2P1NA 5DAFA 3KVTA 4I6JC 2JZ3C 5BXHA 3OHUA 3DCGB 3OHVA 2OVQA 4W9LB 5LLIB 4HXIA 4W9GB 3ZNGB 2OVRA 2PPIA 3BIMA 1VCBB 1LM8C 4CXTA 1EODA 3M52A 4UIJA 4WQOC 1FQVB 2P1MA 2VPKA 3C6PA 3OGLA 4U77A 2R9RB 1HV2A 5H7GA 1LDKD 4N9F5 1FS1B 4APFA 4W9HH 3OGMA 2NZ0B 2E31B 4CRHA 4JGHC 1R28A 2A79B 3MKSA 3ZRFB 1QDVA 4U2MA 2FNJC 1EOFA 4W9JB 5HYWB 4ZGCA 1FS2B 2MA9C 4U2NA 2I2RA 4J8ZA 5A15A 2NN2A 2OVPA 4W9HB 3HU6A 5FTAA 3GA1A 4JTCB 1CS3A 3HVEA 5HZGC 3ZTDB 1EOEA 4CXJA 3DRZA 2C9WC 2P1OA 3B84A 1LQBB 1EXBE 3DRXA 5EUPA 4AP2A 4BKTB 4W9FB 3HQIA 5A6RA 5JH5B 3E4UA 2VKPA 3HTMA 3C6NA 4BKSB 3LBZA 3ZUNB 3L2OA 1NN7A 4UYIA 1QDWA 4AJYC 3HVEB 3DRYA 2Q81A 2IHCA 1BUOA 3LNMB 1DSXA 5BO4C 4CXIA 5BXBA 1P22B 2Z8HA 4B9KE 2YY9A 3M5BA 4JTDB 3M4TA 5BXDA 2IZVC 3OGKA 1S1GA 2IF5A 2E32B 1T1DA 4CP3A 3LUTB 4BGCA 3FKCA 1NEXA 3ZKJB 4AWJB 3M8VA 4B95B 4YY8A 3V7DA 4W9EB 4EOZA 4W9KB 3WSOB 4JTAB 2ASSA 3I3NA 3ZRCB 5IBKA 4ZOUA 2ASTA 4W9CB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DAD A;  4W9D B;  2P1Q A;  3C6O A;  1A68 A;  1R29 A;  2P1P A;  4B9K B;  4W9I B;  5H7H A;  3ZTC B;  1R2B A;  2P1N A;  5DAF A;  3KVT A;  4I6J C;  2JZ3 C;  5BXH A;  3OHU A;  3DCG B;  3OHV A;  2OVQ A;  4W9L B;  5LLI B;  4HXI A;  4W9G B;  3ZNG B;  2OVR A;  2PPI A;  3BIM A;  1VCB B;  1LM8 C;  4CXT A;  1EOD A;  3M52 A;  4UIJ A;  4WQO C;  1FQV B;  2P1M A;  2VPK A;  3C6P A;  3OGL A;  4U77 A;  2R9R B;  1HV2 A;  5H7G A;  1LDK D;  4N9F 5;  1FS1 B;  4APF A;  4W9H H;  3OGM A;  2NZ0 B;  2E31 B;  4CRH A;  4JGH C;  1R28 A;  2A79 B;  3MKS A;  3ZRF B;  1QDV A;  4U2M A;  2FNJ C;  1EOF A;  4W9J B;  5HYW B;  1FS2 B;  2MA9 C;  4U2N A;  2I2R A;  4J8Z A;  5A15 A;  2NN2 A;  2OVP A;  4W9H B;  3HU6 A;  5FTA A;  3GA1 A;  4JTC B;  1CS3 A;  3HVE A;  5HZG C;  3ZTD B;  1EOE A;  4CXJ A;  3DRZ A;  2C9W C;  2P1O A;  3B84 A;  1LQB B;  1EXB E;  5EUP A;  4AP2 A;  4BKT B;  4W9F B;  3HQI A;  5A6R A;  5JH5 B;  3E4U A;  2VKP A;  3HTM A;  3C6N A;  4BKS B;  3LBZ A;  3ZUN B;  3L2O A;  1NN7 A;  4UYI A;  1QDW A;  4AJY C;  3HVE B;  2Q81 A;  2IHC A;  1BUO A;  3LNM B;  1DSX A;  5BO4 C;  4CXI A;  5BXB A;  1P22 B;  2Z8H A;  4B9K E;  2YY9 A;  3M5B A;  4JTD B;  3M4T A;  5BXD A;  2IZV C;  3OGK A;  1S1G A;  2IF5 A;  2E32 B;  1T1D A;  4CP3 A;  3LUT B;  4BGC A;  3FKC A;  1NEX A;  3ZKJ B;  4AWJ B;  3M8V A;  4B95 B;  3V7D A;  4W9E B;  4EOZ A;  4W9K B;  3WSO B;  4JTA B;  2ASS A;  3I3N A;  3ZRC B;  5IBK A;  4ZOU A;  2AST A;  4W9C B; 
#chains in the Genus database with same CATH topology
 5DAD A;  4W9D B;  2P1Q A;  3C6O A;  1A68 A;  1R29 A;  2P1P A;  4B9K B;  4W9I B;  5H7H A;  3ZTC B;  1R2B A;  2P1N A;  5DAF A;  3KVT A;  4I6J C;  2JZ3 C;  5BXH A;  3OHU A;  3DCG B;  3OHV A;  2OVQ A;  4W9L B;  5LLI B;  4HXI A;  4W9G B;  3ZNG B;  2OVR A;  2PPI A;  3BIM A;  1VCB B;  1LM8 C;  4CXT A;  1EOD A;  3M52 A;  4UIJ A;  4WQO C;  1FQV B;  2P1M A;  2VPK A;  3C6P A;  3OGL A;  4U77 A;  2R9R B;  1HV2 A;  5H7G A;  1LDK D;  4N9F 5;  1FS1 B;  4APF A;  4W9H H;  3OGM A;  2NZ0 B;  2E31 B;  4CRH A;  4JGH C;  1R28 A;  2A79 B;  3MKS A;  3ZRF B;  1QDV A;  4U2M A;  2FNJ C;  1EOF A;  4W9J B;  5HYW B;  4ZGC A;  1FS2 B;  2MA9 C;  4U2N A;  2I2R A;  4J8Z A;  5A15 A;  2NN2 A;  2OVP A;  4W9H B;  3HU6 A;  5FTA A;  3GA1 A;  4JTC B;  1CS3 A;  3HVE A;  5HZG C;  3ZTD B;  1EOE A;  4CXJ A;  3DRZ A;  2C9W C;  2P1O A;  3B84 A;  1LQB B;  1EXB E;  3DRX A;  5EUP A;  4AP2 A;  4BKT B;  4W9F B;  3HQI A;  5A6R A;  5JH5 B;  3E4U A;  2VKP A;  3HTM A;  3C6N A;  4BKS B;  3LBZ A;  3ZUN B;  3L2O A;  1NN7 A;  4UYI A;  1QDW A;  4AJY C;  3HVE B;  3DRY A;  2Q81 A;  2IHC A;  1BUO A;  3LNM B;  1DSX A;  5BO4 C;  4CXI A;  5BXB A;  1P22 B;  2Z8H A;  4B9K E;  2YY9 A;  3M5B A;  4JTD B;  3M4T A;  5BXD A;  2IZV C;  3OGK A;  1S1G A;  2IF5 A;  2E32 B;  1T1D A;  4CP3 A;  3LUT B;  4BGC A;  3FKC A;  1NEX A;  3ZKJ B;  4AWJ B;  3M8V A;  4B95 B;  4YY8 A;  3V7D A;  4W9E B;  4EOZ A;  4W9K B;  3WSO B;  4JTA B;  2ASS A;  3I3N A;  3ZRC B;  5IBK A;  4ZOU A;  2AST A;  4W9C B; 
#chains in the Genus database with same CATH homology
 5DAD A;  4W9D B;  2P1Q A;  3C6O A;  1A68 A;  1R29 A;  2P1P A;  4B9K B;  4W9I B;  5H7H A;  3ZTC B;  1R2B A;  2P1N A;  5DAF A;  3KVT A;  4I6J C;  2JZ3 C;  5BXH A;  3OHU A;  3DCG B;  3OHV A;  2OVQ A;  4W9L B;  5LLI B;  4HXI A;  4W9G B;  3ZNG B;  2OVR A;  2PPI A;  3BIM A;  1VCB B;  1LM8 C;  4CXT A;  1EOD A;  3M52 A;  4UIJ A;  4WQO C;  1FQV B;  2P1M A;  2VPK A;  3C6P A;  3OGL A;  4U77 A;  2R9R B;  1HV2 A;  5H7G A;  1LDK D;  4N9F 5;  1FS1 B;  4APF A;  4W9H H;  3OGM A;  2NZ0 B;  2E31 B;  4CRH A;  4JGH C;  1R28 A;  2A79 B;  3MKS A;  3ZRF B;  1QDV A;  4U2M A;  2FNJ C;  1EOF A;  4W9J B;  5HYW B;  4ZGC A;  1FS2 B;  2MA9 C;  4U2N A;  2I2R A;  4J8Z A;  5A15 A;  2NN2 A;  2OVP A;  4W9H B;  3HU6 A;  5FTA A;  3GA1 A;  4JTC B;  1CS3 A;  3HVE A;  5HZG C;  3ZTD B;  1EOE A;  4CXJ A;  3DRZ A;  2C9W C;  2P1O A;  3B84 A;  1LQB B;  1EXB E;  3DRX A;  5EUP A;  4AP2 A;  4BKT B;  4W9F B;  3HQI A;  5A6R A;  5JH5 B;  3E4U A;  2VKP A;  3HTM A;  3C6N A;  4BKS B;  3LBZ A;  3ZUN B;  3L2O A;  1NN7 A;  4UYI A;  1QDW A;  4AJY C;  3HVE B;  3DRY A;  2Q81 A;  2IHC A;  1BUO A;  3LNM B;  1DSX A;  5BO4 C;  4CXI A;  5BXB A;  1P22 B;  2Z8H A;  4B9K E;  2YY9 A;  3M5B A;  4JTD B;  3M4T A;  5BXD A;  2IZV C;  3OGK A;  1S1G A;  2IF5 A;  2E32 B;  1T1D A;  4CP3 A;  3LUT B;  4BGC A;  3FKC A;  1NEX A;  3ZKJ B;  4AWJ B;  3M8V A;  4B95 B;  4YY8 A;  3V7D A;  4W9E B;  4EOZ A;  4W9K B;  3WSO B;  4JTA B;  2ASS A;  3I3N A;  3ZRC B;  5IBK A;  4ZOU A;  2AST A;  4W9C B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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