3MMKA

The structural basis for partial redundancy in a class of transcription factors, the lim-homeodomain proteins, in neural cell type specification
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
163
structure length
151
Chain Sequence
QIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQGITQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKGGGTPLVAGSPIGHENAVQGSAVEVQTYQP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Fusion of LIM/homeobox protein Lhx4, linker, Insulin gene en
publication title The structural basis for partial redundancy in a class of transcription factors, the lim-homeodomain proteins, in neural cell type specification.
pubmed doi rcsb
source organism Mus musculus
total genus 24
structure length 151
sequence length 163
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-04-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00412 LIM LIM domain
A PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 3mmkA01
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 3mmkA02
4HI9B 2L4ZA 2XJYA 3MMKA 1RUTX 2CURA 2MIUA 2CUQA 2O10A 1WIGA 2CUPA 1CXXA 2O13A 4JCJA 2KBXB 2DARA 1X3HA 2D8ZA 1QLIA 2CU8A 2EGQA 2XJZA 1X4LA 2D8YA 1X6AA 4KFZA 4HI8B 2IYBE 1X64A 2D8XA 1X61A 3IXEB 1M3VA 2CO8A 2CORA 3F6QB 1IBIA 1WYHA 2EHEA 2LZUA 1B8TA 1X63A 2DLOA 1V6GA 2MBVA 1CTLA 2DJ7A 2DFYC 1A7IA 2JTNA 1NYPA 1G47A 1X62A 2YPAC 2L6ZC 2L6YB 1U5SB 2XQNT 1J2OA 1X68A 2LXDA 1IMLA
chains in the Genus database with same CATH superfamily
2XJYA 1RUTX 2CURA 2CUQA 4UF0B 3AVRA 4EZ4A 5FXVA 5FYMA 4BHWA 2CORA 1IBIA 1WYHA 1CTLA 2DJ7A 2JTNA 5LKUA 1X62A 1X68A 2L4ZA 4EZHA 5LKTA 5FP3A 2KBXB 2D8ZA 2CU8A 3ZLIA 1X4LA 5FXZA 4UF0A 1X64A 3NIHA 2CO8A 5LKXA 3F6QB 2MBVA 3AVSA 3ZPOA 5LKZA 1G47A 1NYPA 5FY0A 2YPAC 2L6ZC 3NILA 2L6YB 1J2OA 3MMKA 2MIUA 1CXXA 2O13A 2DARA 5FY1A 3NINA 2XJZA 4HI8B 4ASKA 1X61A 3NIKA 1M3VA 2EHEA 2DFYC 1A7IA 1U5SB 2XUEA 2LXDA 1IMLA 4HI9B 2O10A 1WIGA 2CUPA 3NISA 4JCJA 1X3HA 3NIMA 1QLIA 2EGQA 2D8YA 1X6AA 4KFZA 2IYBE 2D8XA 3IXEB 1B8TA 2LZUA 1X63A 2DLOA 1V6GA 5A1LA 5FY7A 3NIJA 5FXWA 5FXXA 2XQNT 4EYUA
chains in the Genus database with same CATH topology
2XJYA 1RUTX 2CURA 2CUQA 4UF0B 3AVRA 4EZ4A 5FXVA 5FYMA 4BHWA 2CORA 1IBIA 1WYHA 1CTLA 2DJ7A 2JTNA 5LKUA 1X62A 1X68A 2L4ZA 4EZHA 5LKTA 5FP3A 2KBXB 2D8ZA 2CU8A 3ZLIA 1X4LA 5FXZA 4UF0A 1X64A 3NIHA 2CO8A 5LKXA 3F6QB 2MBVA 3AVSA 3ZPOA 5LKZA 1G47A 1NYPA 5FY0A 2YPAC 2L6ZC 3NILA 2L6YB 1J2OA 3MMKA 2MIUA 1CXXA 2O13A 2DARA 5FY1A 3NINA 2XJZA 4HI8B 4ASKA 1X61A 3NIKA 1M3VA 2EHEA 2DFYC 1A7IA 1U5SB 2XUEA 2LXDA 1IMLA 4HI9B 2O10A 1WIGA 2CUPA 3NISA 4JCJA 1X3HA 3NIMA 1QLIA 2EGQA 2D8YA 1X6AA 4KFZA 2IYBE 2D8XA 3IXEB 1B8TA 2LZUA 1X63A 2DLOA 1V6GA 5A1LA 5FY7A 3NIJA 5FXWA 5FXXA 2XQNT 4EYUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HI9 B;  2L4Z A;  2XJY A;  3MMK A;  1RUT X;  2CUR A;  2MIU A;  2CUQ A;  2O10 A;  1WIG A;  2CUP A;  1CXX A;  2O13 A;  4JCJ A;  2KBX B;  2DAR A;  1X3H A;  2D8Z A;  1QLI A;  2CU8 A;  2EGQ A;  2XJZ A;  1X4L A;  2D8Y A;  1X6A A;  4KFZ A;  4HI8 B;  2IYB E;  1X64 A;  2D8X A;  1X61 A;  3IXE B;  1M3V A;  2CO8 A;  2COR A;  3F6Q B;  1IBI A;  1WYH A;  2EHE A;  2LZU A;  1B8T A;  1X63 A;  2DLO A;  1V6G A;  2MBV A;  1CTL A;  2DJ7 A;  2DFY C;  1A7I A;  2JTN A;  1NYP A;  1G47 A;  1X62 A;  2YPA C;  2L6Z C;  2L6Y B;  1U5S B;  2XQN T;  1J2O A;  1X68 A;  2LXD A;  1IML A; 
#chains in the Genus database with same CATH topology
 2XJY A;  1RUT X;  2CUR A;  2CUQ A;  4UF0 B;  3AVR A;  4EZ4 A;  5FXV A;  5FYM A;  4BHW A;  2COR A;  1IBI A;  1WYH A;  1CTL A;  2DJ7 A;  2JTN A;  5LKU A;  1X62 A;  1X68 A;  2L4Z A;  4EZH A;  5LKT A;  5FP3 A;  2KBX B;  2D8Z A;  2CU8 A;  3ZLI A;  1X4L A;  5FXZ A;  4UF0 A;  1X64 A;  3NIH A;  2CO8 A;  5LKX A;  3F6Q B;  2MBV A;  3AVS A;  3ZPO A;  5LKZ A;  1G47 A;  1NYP A;  5FY0 A;  2YPA C;  2L6Z C;  3NIL A;  2L6Y B;  1J2O A;  3MMK A;  2MIU A;  1CXX A;  2O13 A;  2DAR A;  5FY1 A;  3NIN A;  2XJZ A;  4HI8 B;  4ASK A;  1X61 A;  3NIK A;  1M3V A;  2EHE A;  2DFY C;  1A7I A;  1U5S B;  2XUE A;  2LXD A;  1IML A;  4HI9 B;  2O10 A;  1WIG A;  2CUP A;  3NIS A;  4JCJ A;  1X3H A;  3NIM A;  1QLI A;  2EGQ A;  2D8Y A;  1X6A A;  4KFZ A;  2IYB E;  2D8X A;  3IXE B;  1B8T A;  2LZU A;  1X63 A;  2DLO A;  1V6G A;  5A1L A;  5FY7 A;  3NIJ A;  5FXW A;  5FXX A;  2XQN T;  4EYU A; 
#chains in the Genus database with same CATH homology
 2XJY A;  1RUT X;  2CUR A;  2CUQ A;  4UF0 B;  3AVR A;  4EZ4 A;  5FXV A;  5FYM A;  4BHW A;  2COR A;  1IBI A;  1WYH A;  1CTL A;  2DJ7 A;  2JTN A;  5LKU A;  1X62 A;  1X68 A;  2L4Z A;  4EZH A;  5LKT A;  5FP3 A;  2KBX B;  2D8Z A;  2CU8 A;  3ZLI A;  1X4L A;  5FXZ A;  4UF0 A;  1X64 A;  3NIH A;  2CO8 A;  5LKX A;  3F6Q B;  2MBV A;  3AVS A;  3ZPO A;  5LKZ A;  1G47 A;  1NYP A;  5FY0 A;  2YPA C;  2L6Z C;  3NIL A;  2L6Y B;  1J2O A;  3MMK A;  2MIU A;  1CXX A;  2O13 A;  2DAR A;  5FY1 A;  3NIN A;  2XJZ A;  4HI8 B;  4ASK A;  1X61 A;  3NIK A;  1M3V A;  2EHE A;  2DFY C;  1A7I A;  1U5S B;  2XUE A;  2LXD A;  1IML A;  4HI9 B;  2O10 A;  1WIG A;  2CUP A;  3NIS A;  4JCJ A;  1X3H A;  3NIM A;  1QLI A;  2EGQ A;  2D8Y A;  1X6A A;  4KFZ A;  2IYB E;  2D8X A;  3IXE B;  1B8T A;  2LZU A;  1X63 A;  2DLO A;  1V6G A;  5A1L A;  5FY7 A;  3NIJ A;  5FXW A;  5FXX A;  2XQN T;  4EYU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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