3MOPK

The ternary death domain complex of myd88, irak4, and irak2
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
93
structure length
93
Chain Sequence
ACYIYQLPSWVLDDLCRNMDALSEWDWMEFASYVITDLTQLRKIKSMEWVQGVSITRELLWWWGMRQATVQQLVDLLCRLELYRAAQIILNWK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein, immune system
molecule keywords Myeloid differentiation primary response protein MyD88
publication title Helical assembly in the MyD88-IRAK4-IRAK2 complex in TLR/IL-1R signalling.
pubmed doi rcsb
source organism Homo sapiens
total genus 25
structure length 93
sequence length 93
chains with identical sequence L, M, N
ec nomenclature
pdb deposition date 2010-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF00531 Death Death domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 3mopK00
3CRDA 2DBHA 1PN5A 1D2ZB 4M9SA 1ICHA 1DDFA 2D96A 4ZBWA 2BBZA 2OF5A 3CL3A 2VGQA 2MS7A 3KATA 2GF5A 2NZ7A 4LWDA 2L6AA 3MOPG 4JUPA 2L9MA 2A5YB 3QF2A 1E41A 4RHWA 1WH4A 4O7QA 3YGSP 2NSNA 1A1ZA 3EZQA 1CY5A 1FADA 1NGRA 1YGOA 4IZ5E 4FH0A 4P4HI 4N1JA 3LQRA 2G7RA 2IB1A 4O6XA 4DWNA 2KM6A 1A1WA 1C15A 4N1KA 1N3KA 4EWIA 4I16A 4F44A 3T6PA 4A2QA 4A2WA 2N80A 2A9IA 2HM2Q 3J63A 4D8OA 2M5VA 3MOPA 2O71A 3EZQB 1D2ZA 4E9MA 4UZ0A 3MOPK 4QOBA 4RHWE 4JQWA 2DBGA 1DGNA 2YGSA 4N1LA 4M9ZA 2DBDA 2F1SA 2NAQA 2MS8A 4O9FA 3LQQA 4P4HA 2DBFA 2N7ZA 2P1HA 2MPCA 3J6JA 2B1WA 4IZAB 1WMGA 2N1FA 4IZ7B 2LWEA 4F42A 2YVIA 1E3YA 2BBRA 2YQFA 1UCPA 4M9XA 2N83A 2YU0A 4O9LA 1WXPA 2LWDA 2DO9A 2KN6A 3YGSC 1CWWA 2MN4A 2MB9A 2N00A 2OF5H 4NQKA 2LS7A 2N97A 1Z6TA
chains in the Genus database with same CATH superfamily
3CRDA 2DBHA 1PN5A 1D2ZB 4M9SA 1ICHA 1DDFA 2D96A 4ZBWA 2BBZA 2OF5A 3CL3A 2VGQA 2MS7A 3KATA 2GF5A 2NZ7A 4LWDA 2L6AA 3MOPG 4JUPA 2L9MA 2A5YB 3QF2A 1E41A 4RHWA 1WH4A 4O7QA 3YGSP 2NSNA 1A1ZA 3EZQA 1CY5A 1FADA 1NGRA 1YGOA 4IZ5E 4FH0A 4P4HI 4N1JA 3LQRA 2G7RA 2IB1A 4O6XA 4DWNA 2KM6A 1A1WA 1C15A 4N1KA 1N3KA 4EWIA 4I16A 4F44A 3T6PA 4A2QA 4A2WA 2N80A 2A9IA 2HM2Q 3J63A 4D8OA 2M5VA 3MOPA 2O71A 3EZQB 1D2ZA 4E9MA 4UZ0A 3MOPK 4QOBA 4RHWE 4JQWA 2DBGA 1DGNA 2YGSA 4N1LA 4M9ZA 2DBDA 2F1SA 2NAQA 2MS8A 4O9FA 3LQQA 4P4HA 2DBFA 2N7ZA 2P1HA 2MPCA 3J6JA 2B1WA 4IZAB 1WMGA 2N1FA 4IZ7B 2LWEA 4F42A 2YVIA 1E3YA 2BBRA 2YQFA 1UCPA 4M9XA 2N83A 2YU0A 4O9LA 1WXPA 2LWDA 2DO9A 2KN6A 2XV9A 3YGSC 1CWWA 2MJMA 2MN4A 2MB9A 2N00A 2OF5H 4NQKA 2LS7A 2N97A 1Z6TA
chains in the Genus database with same CATH topology
3CRDA 2DBHA 1PN5A 1D2ZB 4M9SA 1ICHA 1DDFA 2D96A 4ZBWA 2BBZA 2OF5A 3CL3A 2VGQA 2MS7A 3KATA 2GF5A 2NZ7A 4LWDA 2L6AA 3MOPG 4JUPA 2L9MA 2A5YB 3QF2A 1E41A 4RHWA 1WH4A 4O7QA 3YGSP 2NSNA 1A1ZA 3EZQA 1CY5A 1FADA 1NGRA 1YGOA 4IZ5E 4FH0A 4P4HI 4N1JA 3LQRA 2G7RA 2IB1A 4O6XA 4DWNA 2KM6A 1A1WA 1C15A 4N1KA 1N3KA 4EWIA 4I16A 4F44A 3T6PA 4A2QA 4A2WA 2N80A 2A9IA 2HM2Q 3J63A 4D8OA 2M5VA 3MOPA 2O71A 3EZQB 1D2ZA 4E9MA 4UZ0A 3MOPK 4QOBA 4RHWE 4JQWA 2DBGA 1DGNA 2YGSA 4N1LA 4M9ZA 2DBDA 2F1SA 2NAQA 2MS8A 4O9FA 3LQQA 4P4HA 2DBFA 2N7ZA 2P1HA 2MPCA 3J6JA 2B1WA 4IZAB 1WMGA 2N1FA 4IZ7B 2LWEA 4F42A 2YVIA 1E3YA 2BBRA 2YQFA 1UCPA 4M9XA 2N83A 2YU0A 4O9LA 1WXPA 2LWDA 2DO9A 2KN6A 2XV9A 3YGSC 1CWWA 2MJMA 2MN4A 2MB9A 2N00A 2OF5H 4NQKA 2LS7A 2N97A 1Z6TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CRD A;  2DBH A;  1PN5 A;  1D2Z B;  4M9S A;  1ICH A;  1DDF A;  2D96 A;  4ZBW A;  2BBZ A;  2OF5 A;  3CL3 A;  2VGQ A;  2MS7 A;  3KAT A;  2GF5 A;  2NZ7 A;  4LWD A;  2L6A A;  3MOP G;  4JUP A;  2L9M A;  2A5Y B;  3QF2 A;  1E41 A;  4RHW A;  1WH4 A;  4O7Q A;  3YGS P;  2NSN A;  1A1Z A;  3EZQ A;  1CY5 A;  1FAD A;  1NGR A;  1YGO A;  4IZ5 E;  4FH0 A;  4P4H I;  4N1J A;  3LQR A;  2G7R A;  2IB1 A;  4O6X A;  4DWN A;  2KM6 A;  1A1W A;  1C15 A;  4N1K A;  1N3K A;  4EWI A;  4I16 A;  4F44 A;  3T6P A;  4A2Q A;  4A2W A;  2N80 A;  2A9I A;  2HM2 Q;  3J63 A;  4D8O A;  2M5V A;  3MOP A;  2O71 A;  3EZQ B;  1D2Z A;  4E9M A;  4UZ0 A;  3MOP K;  4QOB A;  4RHW E;  4JQW A;  2DBG A;  1DGN A;  2YGS A;  4N1L A;  4M9Z A;  2DBD A;  2F1S A;  2NAQ A;  2MS8 A;  4O9F A;  3LQQ A;  4P4H A;  2DBF A;  2N7Z A;  2P1H A;  2MPC A;  3J6J A;  2B1W A;  4IZA B;  1WMG A;  2N1F A;  4IZ7 B;  2LWE A;  4F42 A;  2YVI A;  1E3Y A;  2BBR A;  2YQF A;  1UCP A;  4M9X A;  2N83 A;  2YU0 A;  4O9L A;  1WXP A;  2LWD A;  2DO9 A;  2KN6 A;  3YGS C;  1CWW A;  2MN4 A;  2MB9 A;  2N00 A;  2OF5 H;  4NQK A;  2LS7 A;  2N97 A;  1Z6T A; 
#chains in the Genus database with same CATH topology
 3CRD A;  2DBH A;  1PN5 A;  1D2Z B;  4M9S A;  1ICH A;  1DDF A;  2D96 A;  4ZBW A;  2BBZ A;  2OF5 A;  3CL3 A;  2VGQ A;  2MS7 A;  3KAT A;  2GF5 A;  2NZ7 A;  4LWD A;  2L6A A;  3MOP G;  4JUP A;  2L9M A;  2A5Y B;  3QF2 A;  1E41 A;  4RHW A;  1WH4 A;  4O7Q A;  3YGS P;  2NSN A;  1A1Z A;  3EZQ A;  1CY5 A;  1FAD A;  1NGR A;  1YGO A;  4IZ5 E;  4FH0 A;  4P4H I;  4N1J A;  3LQR A;  2G7R A;  2IB1 A;  4O6X A;  4DWN A;  2KM6 A;  1A1W A;  1C15 A;  4N1K A;  1N3K A;  4EWI A;  4I16 A;  4F44 A;  3T6P A;  4A2Q A;  4A2W A;  2N80 A;  2A9I A;  2HM2 Q;  3J63 A;  4D8O A;  2M5V A;  3MOP A;  2O71 A;  3EZQ B;  1D2Z A;  4E9M A;  4UZ0 A;  3MOP K;  4QOB A;  4RHW E;  4JQW A;  2DBG A;  1DGN A;  2YGS A;  4N1L A;  4M9Z A;  2DBD A;  2F1S A;  2NAQ A;  2MS8 A;  4O9F A;  3LQQ A;  4P4H A;  2DBF A;  2N7Z A;  2P1H A;  2MPC A;  3J6J A;  2B1W A;  4IZA B;  1WMG A;  2N1F A;  4IZ7 B;  2LWE A;  4F42 A;  2YVI A;  1E3Y A;  2BBR A;  2YQF A;  1UCP A;  4M9X A;  2N83 A;  2YU0 A;  4O9L A;  1WXP A;  2LWD A;  2DO9 A;  2KN6 A;  2XV9 A;  3YGS C;  1CWW A;  2MJM A;  2MN4 A;  2MB9 A;  2N00 A;  2OF5 H;  4NQK A;  2LS7 A;  2N97 A;  1Z6T A; 
#chains in the Genus database with same CATH homology
 3CRD A;  2DBH A;  1PN5 A;  1D2Z B;  4M9S A;  1ICH A;  1DDF A;  2D96 A;  4ZBW A;  2BBZ A;  2OF5 A;  3CL3 A;  2VGQ A;  2MS7 A;  3KAT A;  2GF5 A;  2NZ7 A;  4LWD A;  2L6A A;  3MOP G;  4JUP A;  2L9M A;  2A5Y B;  3QF2 A;  1E41 A;  4RHW A;  1WH4 A;  4O7Q A;  3YGS P;  2NSN A;  1A1Z A;  3EZQ A;  1CY5 A;  1FAD A;  1NGR A;  1YGO A;  4IZ5 E;  4FH0 A;  4P4H I;  4N1J A;  3LQR A;  2G7R A;  2IB1 A;  4O6X A;  4DWN A;  2KM6 A;  1A1W A;  1C15 A;  4N1K A;  1N3K A;  4EWI A;  4I16 A;  4F44 A;  3T6P A;  4A2Q A;  4A2W A;  2N80 A;  2A9I A;  2HM2 Q;  3J63 A;  4D8O A;  2M5V A;  3MOP A;  2O71 A;  3EZQ B;  1D2Z A;  4E9M A;  4UZ0 A;  3MOP K;  4QOB A;  4RHW E;  4JQW A;  2DBG A;  1DGN A;  2YGS A;  4N1L A;  4M9Z A;  2DBD A;  2F1S A;  2NAQ A;  2MS8 A;  4O9F A;  3LQQ A;  4P4H A;  2DBF A;  2N7Z A;  2P1H A;  2MPC A;  3J6J A;  2B1W A;  4IZA B;  1WMG A;  2N1F A;  4IZ7 B;  2LWE A;  4F42 A;  2YVI A;  1E3Y A;  2BBR A;  2YQF A;  1UCP A;  4M9X A;  2N83 A;  2YU0 A;  4O9L A;  1WXP A;  2LWD A;  2DO9 A;  2KN6 A;  2XV9 A;  3YGS C;  1CWW A;  2MJM A;  2MN4 A;  2MB9 A;  2N00 A;  2OF5 H;  4NQK A;  2LS7 A;  2N97 A;  1Z6T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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