3MPIA

Structure of the glutaryl-coenzyme a dehydrogenase glutaryl-coa complex
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
391
structure length
391
Chain Sequence
MDFNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKTSNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQLGVRKANRKG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Glutaryl-CoA dehydrogenase
publication title Structural basis for promoting and preventing decarboxylation in glutaryl-coenzyme a dehydrogenases.
pubmed doi rcsb
source organism Desulfococcus multivorans
molecule tags Oxidoreductase
total genus 148
structure length 391
sequence length 391
chains with identical sequence B, C, D
ec nomenclature ec 1.3.99.32: Glutaryl-CoA dehydrogenase (acceptor).
pdb deposition date 2010-04-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3mpiA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3mpiA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3mpiA02
4DOYA 2JBTA 3BNHA 3MDEA 3AFFA 3B96A 2YYKA 3GM6A 1WS9A 1EGEA 3RKHA 2UXWA 4X28A 2E81A 3L1TA 3OWAA 4L38A 3LGQA 2YYJA 2ZO5A 1JQIA 3D9FA 3UBRA 3D9GA 2WBIA 3MMOA 5K3HA 4L1FA 1FS8A 4Q5BA 2YYGA 2E80A 2JIFA 2IX6A 2YYIA 4L3YA 2R0MA 3D1IA 3PFDA 3R7KA 4NXLA 3P4TA 3SCEA 2C0UA 1SIQA 2OR0A 3BNJA 1RX0A 3SF6A 3SWOA 4JEKA 3X0YA 3MKHA 3X0XA 3TTBA 3S7WA 4W9UA 3FCJA 3MPIA 1U8VA 3MXLA 4P13A 4ZYJA 4OO2A 4L3ZA 4KTOA 4ZXVA 2JBRA 3D6BA 2YYMA 2J7AA 3GQTA 2ZAFA 3LG1A 3D9EA 2FONA 3AFEA 1OAHA 4RM7A 4IRNA 3M9VA 4L3XA 3UU9A 2PG0A 3TORA 4Q4UA 3GNCA 4O5MA 4G5EA 3SXQA 2VIGA 5K3IA 2OT4A 4N5FA 4KCFA 3F29A 1FS7A 3FO3A 3HWCA 1UDYA 4XVXA 1GU6A 5K3GA 2D29A 1R2JA 2JBSA 2RFQA 4WJYA 3OWMA 1IS2A 2RF7A 5K3JA 1QDBA 4X28C 4Q1OA 2A1TA 2DVLA 2Z1QA 1SIRA 1FS9A 1W07A 3BNFA 1EGDA 3D9DA 1BUCA 2C12A 4M9AA 2YYLA 4Q5CA 2R0NA 3MPJA 4Q17A 4U83A 3OIBA 4Q0TA 1IVHA 4IV6A 2RDZA 2DDHA 2IX5A 3II9A 2REHA 1EGCA 1UKWA 2EBAA 2VR0A 3NF4A 1T9GA 3EONA 3EOMA 3MDDA 3BNGA 4HR3A 2CX9A
chains in the Genus database with same CATH superfamily
4DOYA 2JBTA 1XFWA 3BNHA 3MDEA 3AFFA 4KS9A 1PI1A 3B96A 2XS1A 2YYKA 3GM6A 1WS9A 1Y8OA 2FP2A 1EGEA 3RKHA 2UXWA 4AKHA 4AKIA 4AKGA 4X28A 2BU6A 2E81A 3L1TA 3OWAA 2CJ5A 4L38A 4MPNA 5J6AA 3LGQA 1SC5A 2XQRB 2YYJA 1GJVA 2ZDXA 2ZO5A 5M4NA 3Q22A 1X90A 1JQIA 2ZKJA 4HKSA 2XS8A 1PK0A 3D9FA 4FF4A 3UBRA 1Y8PA 3D9GA 2OJQA 2WBIA 3MMOA 4MPEA 4E02A 1K93A 2R02A 5K3HA 4L1FA 1FS8A 2OEVA 2AO2A 2QR4A 4Q5BA 2YYGA 1K90A 2E80A 2JIFA 2CJ7A 2IX6A 2YYIA 4E01A 4MPCA 4L3YA 2R0MA 3D1IA 2F6LA 1LVCA 3D2RA 3PFDA 3VADA 4FF3A 3R7KA 4NXLA 3P4TA 3SCEA 2C0UA 5J71A 1SIQA 2OR0A 4AI6A 3VKHA 1R3BA 3BNJA 1RX0A 3SF6A 5M4MA 3SWOA 4V25A 1Y8NA 3C2PA 4JEKA 3X0YA 4J1VA 4FF2A 3MKHA 4V26A 2EBFX 2VF1A 5M4PA 3X0XA 2Q8IA 3TTBA 3S7WA 4W9UA 3FCJA 3MPIA 1K8TA 1U8VA 3MXLA 5B5VA 4P13A 2Q8GA 4ZYJA 4OO2A 4L3ZA 4KTOA 2ZDYA 3CE2A 4ZXVA 2CJ6A 2JBRA 3D6BA 1XFXA 2EBHX 4E00A 2YYMA 4H85A 1S26A 1XFYA 5BRMA 2J7AA 4MP7A 3C46A 3GQTA 1GKXA 2ZAFA 3LG1A 3CRLA 3D9EA 2R03A 4LQQB 2FONA 3TZ4A 4DZYA 3AFEA 1OAHA 4QICA 1GKZA 1RP3A 2BU7A 4RM7A 4IRNA 3M9VA 4L3XA 2E0AA 2PG0A 2Q8FA 3UU9A 5BRKA 4MP2A 2FP1A 4JIOA 4Q4UA 3TORA 1XFZA 4P79A 3GNCA 4O5MA 4G5EA 3Q24A 3SXQA 4G97A 2VIGA 5K3IA 4FZ4A 2OT4A 4N5FA 4JIZA 4KCFA 3F29A 1FS7A 3FO3A 2OEXA 3HWCA 1RJ1A 1UDYA 4XVXA 1GU6A 4LQSB 1XFVA 5K3GA 2D29A 1R2JA 2HJNA 1RJ4A 3DJLA 2JBSA 2RFQA 2BTZA 4H81A 4WJYA 3OWMA 3VKGA 1IS2A 5GJWE 2RF7A 1Y0VA 5K3JA 1QDBA 4X28C 3Q0AA 4Q1OA 2A1TA 2DVLA 2R05A 3U33A 2BU2A 2Z1QA 5B5WA 3CRKA 3TZ5A 1SIRA 3N0RA 2GBBA 2PO4A 1FS9A 1W07A 3BNFA 1EGDA 3D9DA 1SK6A 1BUCA 5M4KA 2C12A 4M9AA 4HKRA 3C3LA 2EC5A 2YYLA 4Q5CA 2R0NA 1X8ZA 2PNRA 3TZ0A 3MPJA 1XG2B 2YGWA 4Q17A 1XFUA 4U83A 4KSFA 2LFWA 3OIBA 4Q0TA 5B6BA 2Q8HA 1IVHA 3KMLA 4IV6A 2RDZA 4F0XA 2DDHA 2IX5A 3II9A 4H7QA 2REHA 2CJ8A 5GJVE 1EGCA 3Q23A 1UKWA 2EBAA 3TZ2A 2BU5A 2VR0A 4KSAA 1JM6A 3NF4A 2CJ4A 4FF1A 2BU8A 1T9GA 3EONA 3EOMA 1X91A 3MDDA 3BNGA 3X29A 5EZ3A 4HR3A 2CX9A 2AZEA
chains in the Genus database with same CATH topology
4DOYA 2JBTA 3BNHA 3MDEA 3AFFA 3B96A 2YYKA 3GM6A 1WS9A 1EGEA 3RKHA 2UXWA 4X28A 2E81A 3L1TA 3OWAA 4L38A 3LGQA 2YYJA 2ZO5A 1JQIA 3D9FA 3UBRA 3D9GA 2WBIA 3MMOA 5K3HA 4L1FA 1FS8A 4Q5BA 2YYGA 2E80A 2JIFA 2IX6A 2YYIA 4L3YA 2R0MA 3D1IA 3PFDA 3R7KA 4NXLA 3P4TA 3SCEA 2C0UA 1SIQA 2OR0A 3BNJA 1RX0A 3SF6A 3SWOA 4JEKA 3X0YA 3MKHA 3X0XA 3TTBA 3S7WA 4W9UA 3FCJA 3MPIA 1U8VA 3MXLA 4P13A 4ZYJA 4OO2A 4L3ZA 4KTOA 4ZXVA 2JBRA 3D6BA 2YYMA 2J7AA 3GQTA 2ZAFA 3LG1A 3D9EA 2FONA 3AFEA 1OAHA 4RM7A 4IRNA 3M9VA 4L3XA 3UU9A 2PG0A 3TORA 4Q4UA 3GNCA 4O5MA 4G5EA 3SXQA 2VIGA 5K3IA 2OT4A 4N5FA 4KCFA 3F29A 1FS7A 3FO3A 3HWCA 1UDYA 4XVXA 1GU6A 5K3GA 2D29A 1R2JA 2JBSA 2RFQA 4WJYA 3OWMA 1IS2A 2RF7A 5K3JA 1QDBA 4X28C 4Q1OA 2A1TA 2DVLA 2Z1QA 1SIRA 1FS9A 1W07A 3BNFA 1EGDA 3D9DA 1BUCA 2C12A 4M9AA 2YYLA 4Q5CA 2R0NA 3MPJA 4Q17A 4U83A 3OIBA 4Q0TA 1IVHA 4IV6A 2RDZA 2DDHA 2IX5A 3II9A 2REHA 1EGCA 1UKWA 2EBAA 2VR0A 3NF4A 1T9GA 3EONA 3EOMA 3MDDA 3BNGA 4HR3A 2CX9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DOY A;  2JBT A;  3BNH A;  3MDE A;  3AFF A;  3B96 A;  2YYK A;  3GM6 A;  1WS9 A;  1EGE A;  3RKH A;  2UXW A;  4X28 A;  2E81 A;  3L1T A;  3OWA A;  4L38 A;  3LGQ A;  2YYJ A;  2ZO5 A;  1JQI A;  3D9F A;  3UBR A;  3D9G A;  2WBI A;  3MMO A;  5K3H A;  4L1F A;  1FS8 A;  4Q5B A;  2YYG A;  2E80 A;  2JIF A;  2IX6 A;  2YYI A;  4L3Y A;  2R0M A;  3D1I A;  3PFD A;  3R7K A;  4NXL A;  3P4T A;  3SCE A;  2C0U A;  1SIQ A;  2OR0 A;  3BNJ A;  1RX0 A;  3SF6 A;  3SWO A;  4JEK A;  3X0Y A;  3MKH A;  3X0X A;  3TTB A;  3S7W A;  4W9U A;  3FCJ A;  3MPI A;  1U8V A;  3MXL A;  4P13 A;  4ZYJ A;  4OO2 A;  4L3Z A;  4KTO A;  4ZXV A;  2JBR A;  3D6B A;  2YYM A;  2J7A A;  3GQT A;  2ZAF A;  3LG1 A;  3D9E A;  2FON A;  3AFE A;  1OAH A;  4RM7 A;  4IRN A;  3M9V A;  4L3X A;  3UU9 A;  2PG0 A;  3TOR A;  4Q4U A;  3GNC A;  4O5M A;  4G5E A;  3SXQ A;  2VIG A;  5K3I A;  2OT4 A;  4N5F A;  4KCF A;  3F29 A;  1FS7 A;  3FO3 A;  3HWC A;  1UDY A;  4XVX A;  1GU6 A;  5K3G A;  2D29 A;  1R2J A;  2JBS A;  2RFQ A;  4WJY A;  3OWM A;  1IS2 A;  2RF7 A;  5K3J A;  1QDB A;  4X28 C;  4Q1O A;  2A1T A;  2DVL A;  2Z1Q A;  1SIR A;  1FS9 A;  1W07 A;  3BNF A;  1EGD A;  3D9D A;  1BUC A;  2C12 A;  4M9A A;  2YYL A;  4Q5C A;  2R0N A;  3MPJ A;  4Q17 A;  4U83 A;  3OIB A;  4Q0T A;  1IVH A;  4IV6 A;  2RDZ A;  2DDH A;  2IX5 A;  3II9 A;  2REH A;  1EGC A;  1UKW A;  2EBA A;  2VR0 A;  3NF4 A;  1T9G A;  3EON A;  3EOM A;  3MDD A;  3BNG A;  4HR3 A;  2CX9 A; 
#chains in the Genus database with same CATH topology
 4DOY A;  2JBT A;  1XFW A;  3BNH A;  3MDE A;  3AFF A;  4KS9 A;  1PI1 A;  3B96 A;  2XS1 A;  2YYK A;  3GM6 A;  1WS9 A;  1Y8O A;  2FP2 A;  1EGE A;  3RKH A;  2UXW A;  4AKH A;  4AKI A;  4AKG A;  4X28 A;  2BU6 A;  2E81 A;  3L1T A;  3OWA A;  2CJ5 A;  4L38 A;  4MPN A;  5J6A A;  3LGQ A;  1SC5 A;  2XQR B;  2YYJ A;  1GJV A;  2ZDX A;  2ZO5 A;  5M4N A;  3Q22 A;  1X90 A;  1JQI A;  2ZKJ A;  4HKS A;  2XS8 A;  1PK0 A;  3D9F A;  4FF4 A;  3UBR A;  1Y8P A;  3D9G A;  2OJQ A;  2WBI A;  3MMO A;  4MPE A;  4E02 A;  1K93 A;  2R02 A;  5K3H A;  4L1F A;  1FS8 A;  2OEV A;  2AO2 A;  2QR4 A;  4Q5B A;  2YYG A;  1K90 A;  2E80 A;  2JIF A;  2CJ7 A;  2IX6 A;  2YYI A;  4E01 A;  4MPC A;  4L3Y A;  2R0M A;  3D1I A;  2F6L A;  1LVC A;  3D2R A;  3PFD A;  3VAD A;  4FF3 A;  3R7K A;  4NXL A;  3P4T A;  3SCE A;  2C0U A;  5J71 A;  1SIQ A;  2OR0 A;  4AI6 A;  3VKH A;  1R3B A;  3BNJ A;  1RX0 A;  3SF6 A;  5M4M A;  3SWO A;  4V25 A;  1Y8N A;  3C2P A;  4JEK A;  3X0Y A;  4J1V A;  4FF2 A;  3MKH A;  4V26 A;  2EBF X;  2VF1 A;  5M4P A;  3X0X A;  2Q8I A;  3TTB A;  3S7W A;  4W9U A;  3FCJ A;  3MPI A;  1K8T A;  1U8V A;  3MXL A;  5B5V A;  4P13 A;  2Q8G A;  4ZYJ A;  4OO2 A;  4L3Z A;  4KTO A;  2ZDY A;  3CE2 A;  4ZXV A;  2CJ6 A;  2JBR A;  3D6B A;  1XFX A;  2EBH X;  4E00 A;  2YYM A;  4H85 A;  1S26 A;  1XFY A;  5BRM A;  2J7A A;  4MP7 A;  3C46 A;  3GQT A;  1GKX A;  2ZAF A;  3LG1 A;  3CRL A;  3D9E A;  2R03 A;  4LQQ B;  2FON A;  3TZ4 A;  4DZY A;  3AFE A;  1OAH A;  4QIC A;  1GKZ A;  1RP3 A;  2BU7 A;  4RM7 A;  4IRN A;  3M9V A;  4L3X A;  2E0A A;  2PG0 A;  2Q8F A;  3UU9 A;  5BRK A;  4MP2 A;  2FP1 A;  4JIO A;  4Q4U A;  3TOR A;  1XFZ A;  4P79 A;  3GNC A;  4O5M A;  4G5E A;  3Q24 A;  3SXQ A;  4G97 A;  2VIG A;  5K3I A;  4FZ4 A;  2OT4 A;  4N5F A;  4JIZ A;  4KCF A;  3F29 A;  1FS7 A;  3FO3 A;  2OEX A;  3HWC A;  1RJ1 A;  1UDY A;  4XVX A;  1GU6 A;  4LQS B;  1XFV A;  5K3G A;  2D29 A;  1R2J A;  2HJN A;  1RJ4 A;  3DJL A;  2JBS A;  2RFQ A;  2BTZ A;  4H81 A;  4WJY A;  3OWM A;  3VKG A;  1IS2 A;  5GJW E;  2RF7 A;  1Y0V A;  5K3J A;  1QDB A;  4X28 C;  3Q0A A;  4Q1O A;  2A1T A;  2DVL A;  2R05 A;  3U33 A;  2BU2 A;  2Z1Q A;  5B5W A;  3CRK A;  3TZ5 A;  1SIR A;  3N0R A;  2GBB A;  2PO4 A;  1FS9 A;  1W07 A;  3BNF A;  1EGD A;  3D9D A;  1SK6 A;  1BUC A;  5M4K A;  2C12 A;  4M9A A;  4HKR A;  3C3L A;  2EC5 A;  2YYL A;  4Q5C A;  2R0N A;  1X8Z A;  2PNR A;  3TZ0 A;  3MPJ A;  1XG2 B;  2YGW A;  4Q17 A;  1XFU A;  4U83 A;  4KSF A;  2LFW A;  3OIB A;  4Q0T A;  5B6B A;  2Q8H A;  1IVH A;  3KML A;  4IV6 A;  2RDZ A;  4F0X A;  2DDH A;  2IX5 A;  3II9 A;  4H7Q A;  2REH A;  2CJ8 A;  5GJV E;  1EGC A;  3Q23 A;  1UKW A;  2EBA A;  3TZ2 A;  2BU5 A;  2VR0 A;  4KSA A;  1JM6 A;  3NF4 A;  2CJ4 A;  4FF1 A;  2BU8 A;  1T9G A;  3EON A;  3EOM A;  1X91 A;  3MDD A;  3BNG A;  3X29 A;  5EZ3 A;  4HR3 A;  2CX9 A;  2AZE A; 
#chains in the Genus database with same CATH homology
 4DOY A;  2JBT A;  3BNH A;  3MDE A;  3AFF A;  3B96 A;  2YYK A;  3GM6 A;  1WS9 A;  1EGE A;  3RKH A;  2UXW A;  4X28 A;  2E81 A;  3L1T A;  3OWA A;  4L38 A;  3LGQ A;  2YYJ A;  2ZO5 A;  1JQI A;  3D9F A;  3UBR A;  3D9G A;  2WBI A;  3MMO A;  5K3H A;  4L1F A;  1FS8 A;  4Q5B A;  2YYG A;  2E80 A;  2JIF A;  2IX6 A;  2YYI A;  4L3Y A;  2R0M A;  3D1I A;  3PFD A;  3R7K A;  4NXL A;  3P4T A;  3SCE A;  2C0U A;  1SIQ A;  2OR0 A;  3BNJ A;  1RX0 A;  3SF6 A;  3SWO A;  4JEK A;  3X0Y A;  3MKH A;  3X0X A;  3TTB A;  3S7W A;  4W9U A;  3FCJ A;  3MPI A;  1U8V A;  3MXL A;  4P13 A;  4ZYJ A;  4OO2 A;  4L3Z A;  4KTO A;  4ZXV A;  2JBR A;  3D6B A;  2YYM A;  2J7A A;  3GQT A;  2ZAF A;  3LG1 A;  3D9E A;  2FON A;  3AFE A;  1OAH A;  4RM7 A;  4IRN A;  3M9V A;  4L3X A;  3UU9 A;  2PG0 A;  3TOR A;  4Q4U A;  3GNC A;  4O5M A;  4G5E A;  3SXQ A;  2VIG A;  5K3I A;  2OT4 A;  4N5F A;  4KCF A;  3F29 A;  1FS7 A;  3FO3 A;  3HWC A;  1UDY A;  4XVX A;  1GU6 A;  5K3G A;  2D29 A;  1R2J A;  2JBS A;  2RFQ A;  4WJY A;  3OWM A;  1IS2 A;  2RF7 A;  5K3J A;  1QDB A;  4X28 C;  4Q1O A;  2A1T A;  2DVL A;  2Z1Q A;  1SIR A;  1FS9 A;  1W07 A;  3BNF A;  1EGD A;  3D9D A;  1BUC A;  2C12 A;  4M9A A;  2YYL A;  4Q5C A;  2R0N A;  3MPJ A;  4Q17 A;  4U83 A;  3OIB A;  4Q0T A;  1IVH A;  4IV6 A;  2RDZ A;  2DDH A;  2IX5 A;  3II9 A;  2REH A;  1EGC A;  1UKW A;  2EBA A;  2VR0 A;  3NF4 A;  1T9G A;  3EON A;  3EOM A;  3MDD A;  3BNG A;  4HR3 A;  2CX9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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