3MPZA

Crystal structure of cytidine deaminase from mycobacterium smegmatis
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
125
structure length
125
Chain Sequence
GSMVNWNALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGGGGRLVALSCVGPDGGVLMPCGRCRQVLLEHGGPELLIDHAHGPRPLRELLPDAFGP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Cytidine deaminase
publication title Increasing the structural coverage of tuberculosis drug targets.
pubmed doi rcsb
source organism Mycobacterium smegmatis
total genus 38
structure length 125
sequence length 125
chains with identical sequence B, C, D
ec nomenclature ec 3.5.4.5: Cytidine deaminase.
pdb deposition date 2010-04-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 3mpzA00
1UX0A 3B8FA 1VQ2A 4HRWA 5M52C 4MSDA 4LCPA 4LCNA 2FR5A 2NX8A 3R2NA 1WWRA 2D5NA 1ALNA 4P9EA 5C2OA 4LD4A 4MS7A 2O3KA 2OBCA 4LC5A 4NQLA 1Z3AA 1YSDA 2FR6A 4WIGA 1UAQA 2G6VA 1UWZA 1R5TA 2KCQA 1CTUA 4D10F 4OCLA 4ZFRA 2P8RA 4MSQA 4P9CA 3SBGA 4F7OA 4MSJA 3OCQA 2P87A 4OCMA 4PQTA 4LD2A 2ZNRA 1JTKA 4ZFTA 4O8YA 4OWPA 2Z3GA 3DMOA 4OCLB 3ZPCA 4WIFA 1MQ0A 1OI0A 5GAOA 1WN6A 4OCMB 2HVVA 4P9DA 3MPZA 2Z3JA 4K1RA 1OX7A 4HRQA 4O8YB 4EG2A 2RPZA 2O96A 3G8QA 1TIYA 4OWPB 2A8NA 2O95A 4KITC 2D30A 1RB7A 2HXVA 3RZUA 2G84A 2Z3HA 3DH1A 5M59B 1WKQA 2OG4A 2QLCA 4I43B 1CTTA 1AF2A 4QFTA 3ZEFB 4OCNA 2PW9A 4ILGC 1UX1A 2O7PA 2HVWA 5CW6A 2B3ZA 4ZD5A 1R5XA 3OJ6A 3EX8A 4LCOA 2W4LA 4OCNB 1P6OA 2B3JA 4O8XA 2NYTA 3ZPGA 4BGDC 4ZD4A 2KKSA 3RZVA 4G3MA 3E1UA 4JXEA 4E0QA 4MSMA 4O8XB 1YSBA 2Z3IA 2ZNVA 1ZABA 3IJFX 4F3WA 1WN5A 5DCAJ
chains in the Genus database with same CATH superfamily
1UX0A 3B8FA 1VQ2A 4HRWA 5M52C 4MSDA 4GGMX 2IU3A 4LCPA 4LCNA 2FR5A 2NX8A 2IU0A 3R2NA 1WWRA 2D5NA 1ALNA 4P9EA 5C2OA 4LD4A 4MS7A 2O3KA 2OBCA 4LC5A 4NQLA 1Z3AA 3VX8A 1YSDA 2FR6A 4WIGA 1UAQA 2G6VA 1UWZA 1ZCZA 1OZ0A 1R5TA 1THZA 2KCQA 1CTUA 4D10F 4OCLA 4ZFRA 2P8RA 4MSQA 4P9CA 3SBGA 4F7OA 4MSJA 3OCQA 1M9NA 2P87A 4OCMA 4PQTA 4LD2A 2ZNRA 1JTKA 4ZFTA 4O8YA 4OWPA 2Z3GA 3DMOA 4OCLB 3ZPCA 4WIFA 1MQ0A 1OI0A 5GAOA 1WN6A 4OCMB 2HVVA 4P9DA 3MPZA 2Z3JA 4K1RA 1OX7A 4HRQA 4O8YB 4EG2A 2RPZA 2O96A 3G8QA 1PKXA 1TIYA 1VK9A 2A8NA 2O95A 4OWPB 4KITC 2D30A 4EHIA 1RB7A 2HXVA 3RZUA 1G8MA 2G84A 2Z3HA 3DH1A 3ZZMA 4J6EA 5M59B 1WKQA 3BH1A 2OG4A 2QLCA 4I43B 1P4RA 1CTTA 1PL0A 2B1GA 1AF2A 4QFTA 3ZEFB 4OCNA 2PW9A 4A1OA 4ILGC 1UX1A 2O7PA 2HVWA 5CW6A 2B3ZA 4ZD5A 1R5XA 3OJ6A 3EX8A 4LCOA 2W4LA 4OCNB 1P6OA 2B3JA 4O8XA 2NYTA 3ZPGA 2B1IA 4BGDC 4ZD4A 2KKSA 3RZVA 4G3MA 3E1UA 4JXEA 4E0QA 4MSMA 4O8XB 1YSBA 2Z3IA 2ZNVA 1ZABA 3IJFX 4F3WA 1WN5A 5DCAJ
chains in the Genus database with same CATH topology
1UX0A 3B8FA 1VQ2A 4HRWA 5M52C 4MSDA 4LCPA 4LCNA 2FR5A 2NX8A 3R2NA 1WWRA 2D5NA 1ALNA 4P9EA 5C2OA 4LD4A 4MS7A 2O3KA 2OBCA 4LC5A 4NQLA 1Z3AA 1YSDA 2FR6A 4WIGA 1UAQA 2G6VA 1UWZA 1R5TA 2KCQA 1CTUA 4D10F 4OCLA 4ZFRA 2P8RA 4MSQA 4P9CA 3SBGA 4F7OA 4MSJA 3OCQA 2P87A 4OCMA 4PQTA 4LD2A 2ZNRA 1JTKA 4ZFTA 4O8YA 4OWPA 2Z3GA 3DMOA 4OCLB 3ZPCA 4WIFA 1MQ0A 1OI0A 5GAOA 1WN6A 4OCMB 2HVVA 4P9DA 3MPZA 2Z3JA 4K1RA 1OX7A 4HRQA 4O8YB 4EG2A 2RPZA 2O96A 3G8QA 1TIYA 4OWPB 2A8NA 2O95A 4KITC 2D30A 1RB7A 2HXVA 3RZUA 2G84A 2Z3HA 3DH1A 5M59B 1WKQA 2OG4A 2QLCA 4I43B 1CTTA 1AF2A 4QFTA 3ZEFB 4OCNA 2PW9A 4ILGC 1UX1A 2O7PA 2HVWA 5CW6A 2B3ZA 4ZD5A 1R5XA 3OJ6A 3EX8A 4LCOA 2W4LA 4OCNB 1P6OA 2B3JA 4O8XA 2NYTA 3ZPGA 4BGDC 4ZD4A 2KKSA 3RZVA 4G3MA 3E1UA 4JXEA 4E0QA 4MSMA 4O8XB 1YSBA 2Z3IA 2ZNVA 1ZABA 3IJFX 4F3WA 1WN5A 5DCAJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UX0 A;  3B8F A;  1VQ2 A;  4HRW A;  5M52 C;  4MSD A;  4LCP A;  4LCN A;  2FR5 A;  2NX8 A;  3R2N A;  1WWR A;  2D5N A;  1ALN A;  4P9E A;  5C2O A;  4LD4 A;  4MS7 A;  2O3K A;  2OBC A;  4LC5 A;  4NQL A;  1Z3A A;  1YSD A;  2FR6 A;  4WIG A;  1UAQ A;  2G6V A;  1UWZ A;  1R5T A;  2KCQ A;  1CTU A;  4D10 F;  4OCL A;  4ZFR A;  2P8R A;  4MSQ A;  4P9C A;  3SBG A;  4F7O A;  4MSJ A;  3OCQ A;  2P87 A;  4OCM A;  4PQT A;  4LD2 A;  2ZNR A;  1JTK A;  4ZFT A;  4O8Y A;  4OWP A;  2Z3G A;  3DMO A;  4OCL B;  3ZPC A;  4WIF A;  1MQ0 A;  1OI0 A;  5GAO A;  1WN6 A;  4OCM B;  2HVV A;  4P9D A;  3MPZ A;  2Z3J A;  4K1R A;  1OX7 A;  4HRQ A;  4O8Y B;  4EG2 A;  2RPZ A;  2O96 A;  3G8Q A;  1TIY A;  4OWP B;  2A8N A;  2O95 A;  4KIT C;  2D30 A;  1RB7 A;  2HXV A;  3RZU A;  2G84 A;  2Z3H A;  3DH1 A;  5M59 B;  1WKQ A;  2OG4 A;  2QLC A;  4I43 B;  1CTT A;  1AF2 A;  4QFT A;  3ZEF B;  4OCN A;  2PW9 A;  4ILG C;  1UX1 A;  2O7P A;  2HVW A;  5CW6 A;  2B3Z A;  4ZD5 A;  1R5X A;  3OJ6 A;  3EX8 A;  4LCO A;  2W4L A;  4OCN B;  1P6O A;  2B3J A;  4O8X A;  2NYT A;  3ZPG A;  4BGD C;  4ZD4 A;  2KKS A;  3RZV A;  4G3M A;  3E1U A;  4JXE A;  4E0Q A;  4MSM A;  4O8X B;  1YSB A;  2Z3I A;  2ZNV A;  1ZAB A;  3IJF X;  4F3W A;  1WN5 A;  5DCA J; 
#chains in the Genus database with same CATH topology
 1UX0 A;  3B8F A;  1VQ2 A;  4HRW A;  5M52 C;  4MSD A;  4GGM X;  2IU3 A;  4LCP A;  4LCN A;  2FR5 A;  2NX8 A;  2IU0 A;  3R2N A;  1WWR A;  2D5N A;  1ALN A;  4P9E A;  5C2O A;  4LD4 A;  4MS7 A;  2O3K A;  2OBC A;  4LC5 A;  4NQL A;  1Z3A A;  3VX8 A;  1YSD A;  2FR6 A;  4WIG A;  1UAQ A;  2G6V A;  1UWZ A;  1ZCZ A;  1OZ0 A;  1R5T A;  1THZ A;  2KCQ A;  1CTU A;  4D10 F;  4OCL A;  4ZFR A;  2P8R A;  4MSQ A;  4P9C A;  3SBG A;  4F7O A;  4MSJ A;  3OCQ A;  1M9N A;  2P87 A;  4OCM A;  4PQT A;  4LD2 A;  2ZNR A;  1JTK A;  4ZFT A;  4O8Y A;  4OWP A;  2Z3G A;  3DMO A;  4OCL B;  3ZPC A;  4WIF A;  1MQ0 A;  1OI0 A;  5GAO A;  1WN6 A;  4OCM B;  2HVV A;  4P9D A;  3MPZ A;  2Z3J A;  4K1R A;  1OX7 A;  4HRQ A;  4O8Y B;  4EG2 A;  2RPZ A;  2O96 A;  3G8Q A;  1PKX A;  1TIY A;  1VK9 A;  2A8N A;  2O95 A;  4OWP B;  4KIT C;  2D30 A;  4EHI A;  1RB7 A;  2HXV A;  3RZU A;  1G8M A;  2G84 A;  2Z3H A;  3DH1 A;  3ZZM A;  4J6E A;  5M59 B;  1WKQ A;  3BH1 A;  2OG4 A;  2QLC A;  4I43 B;  1P4R A;  1CTT A;  1PL0 A;  2B1G A;  1AF2 A;  4QFT A;  3ZEF B;  4OCN A;  2PW9 A;  4A1O A;  4ILG C;  1UX1 A;  2O7P A;  2HVW A;  5CW6 A;  2B3Z A;  4ZD5 A;  1R5X A;  3OJ6 A;  3EX8 A;  4LCO A;  2W4L A;  4OCN B;  1P6O A;  2B3J A;  4O8X A;  2NYT A;  3ZPG A;  2B1I A;  4BGD C;  4ZD4 A;  2KKS A;  3RZV A;  4G3M A;  3E1U A;  4JXE A;  4E0Q A;  4MSM A;  4O8X B;  1YSB A;  2Z3I A;  2ZNV A;  1ZAB A;  3IJF X;  4F3W A;  1WN5 A;  5DCA J; 
#chains in the Genus database with same CATH homology
 1UX0 A;  3B8F A;  1VQ2 A;  4HRW A;  5M52 C;  4MSD A;  4LCP A;  4LCN A;  2FR5 A;  2NX8 A;  3R2N A;  1WWR A;  2D5N A;  1ALN A;  4P9E A;  5C2O A;  4LD4 A;  4MS7 A;  2O3K A;  2OBC A;  4LC5 A;  4NQL A;  1Z3A A;  1YSD A;  2FR6 A;  4WIG A;  1UAQ A;  2G6V A;  1UWZ A;  1R5T A;  2KCQ A;  1CTU A;  4D10 F;  4OCL A;  4ZFR A;  2P8R A;  4MSQ A;  4P9C A;  3SBG A;  4F7O A;  4MSJ A;  3OCQ A;  2P87 A;  4OCM A;  4PQT A;  4LD2 A;  2ZNR A;  1JTK A;  4ZFT A;  4O8Y A;  4OWP A;  2Z3G A;  3DMO A;  4OCL B;  3ZPC A;  4WIF A;  1MQ0 A;  1OI0 A;  5GAO A;  1WN6 A;  4OCM B;  2HVV A;  4P9D A;  3MPZ A;  2Z3J A;  4K1R A;  1OX7 A;  4HRQ A;  4O8Y B;  4EG2 A;  2RPZ A;  2O96 A;  3G8Q A;  1TIY A;  4OWP B;  2A8N A;  2O95 A;  4KIT C;  2D30 A;  1RB7 A;  2HXV A;  3RZU A;  2G84 A;  2Z3H A;  3DH1 A;  5M59 B;  1WKQ A;  2OG4 A;  2QLC A;  4I43 B;  1CTT A;  1AF2 A;  4QFT A;  3ZEF B;  4OCN A;  2PW9 A;  4ILG C;  1UX1 A;  2O7P A;  2HVW A;  5CW6 A;  2B3Z A;  4ZD5 A;  1R5X A;  3OJ6 A;  3EX8 A;  4LCO A;  2W4L A;  4OCN B;  1P6O A;  2B3J A;  4O8X A;  2NYT A;  3ZPG A;  4BGD C;  4ZD4 A;  2KKS A;  3RZV A;  4G3M A;  3E1U A;  4JXE A;  4E0Q A;  4MSM A;  4O8X B;  1YSB A;  2Z3I A;  2ZNV A;  1ZAB A;  3IJF X;  4F3W A;  1WN5 A;  5DCA J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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