3MQ3A

Crystal structure of native bovine pdp1c
Total Genus 117
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
453
structure length
378
Chain Sequence
PPQVNSILKANEYSFKVPEFDGKNVSSVLGFDSNQLPANAPIEDRRSAATCLQTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENALLPILQWHKHPNDYFSKEASKLYFNSLRTYWQELIDIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNEREVERLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIEKFIPPNYYTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMQNAATHLIRHAVKMLSLPEELARMYRDDITIIVVQFNSHVVGAYQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords Pyruvate dehydrogenase phosphatase 1
publication title Crystal Structure of Catalytic Subunit of Bovine Pyruvate Dehydrogenase Phophatase
rcsb
source organism Bos taurus
total genus 117
structure length 378
sequence length 453
ec nomenclature ec 3.1.3.43: [Pyruvate dehydrogenase (acetyl-transferring)]-phosphatase.
pdb deposition date 2010-04-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00481 PP2C Protein phosphatase 2C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.40.10 Alpha Beta 4-Layer Sandwich Phosphatase 2c; domain 1 PPM-type phosphatase domain 3mq3A00
2I44A 2POPA 2POMA 3ZVUB 2J4OA 3EQ2A 4RAGA 3W40A 3UJKA 3FXLA 2J86A 3W41A 4OICB 3MQ3A 4YZGA 3W43A 3NMNB 3KDJB 5JO2B 2JFSA 3RT0A 3PU9A 4YZHA 4RAFA 4LG5B 3ZT9A 4DA1A 1A6QA 3KB3B 3NMVB 3ES2A 3FXKA 2J82A 3F79A 3UJGB 3RNRA 2V06A 3N3CA 2ISNA 4RA2A 3FXJA 3UJLB 3FXOA 3T9QA 4N0GA 2IRMA 3KE6A 3JRQA 4WVOB 3W45A 5D2UA 1TXOA 2I0OA 3FXMA 2IQ1A 5JO1B 2PK0A 2XZVA 2PNQA 3T91A 5F1MA 4DS8B 2CM1A 2P8EA 2JFRA 3W42A 4LGAB 4LGBB 5ITIA 2Y09A 3D8KA 3QN1B 4LA7B 4JNDA 2JFTA 3W44A 3NMTB
chains in the Genus database with same CATH superfamily
2I44A 2POPA 2POMA 3ZVUB 2J4OA 3EQ2A 4RAGA 3W40A 3UJKA 3FXLA 2J86A 3W41A 4OICB 3MQ3A 4YZGA 3W43A 3NMNB 3KDJB 5JO2B 2JFSA 3RT0A 3PU9A 4YZHA 4RAFA 4LG5B 3ZT9A 4DA1A 1A6QA 3KB3B 3NMVB 3ES2A 3FXKA 2J82A 3F79A 3UJGB 3RNRA 2V06A 3N3CA 2ISNA 4RA2A 3FXJA 3UJLB 3FXOA 3T9QA 4N0GA 2IRMA 3KE6A 3JRQA 4WVOB 3W45A 5D2UA 1TXOA 4IIPA 2I0OA 3FXMA 2IQ1A 5JO1B 2PK0A 2XZVA 4IIKA 2PNQA 3T91A 5F1MA 4DS8B 2CM1A 2P8EA 2JFRA 3W42A 4LGAB 4LGBB 5ITIA 2Y09A 3D8KA 3QN1B 4LA7B 4JNDA 2JFTA 3W44A 3NMTB
chains in the Genus database with same CATH topology
2I44A 2POPA 2POMA 3ZVUB 2J4OA 3EQ2A 4RAGA 3W40A 3UJKA 3FXLA 2J86A 3W41A 4OICB 3MQ3A 4YZGA 3W43A 3NMNB 3KDJB 5JO2B 2JFSA 3RT0A 3PU9A 4YZHA 4RAFA 4LG5B 3ZT9A 4DA1A 1A6QA 3KB3B 3NMVB 3ES2A 3FXKA 2J82A 3F79A 3UJGB 3RNRA 2V06A 3N3CA 2ISNA 4RA2A 3FXJA 3UJLB 3FXOA 3T9QA 4N0GA 2IRMA 3KE6A 3JRQA 4WVOB 3W45A 5D2UA 1TXOA 2I0OA 3FXMA 2IQ1A 5JO1B 2PK0A 2XZVA 2PNQA 3T91A 5F1MA 4DS8B 2CM1A 2P8EA 2JFRA 3W42A 4LGAB 4LGBB 5ITIA 2Y09A 3D8KA 3QN1B 4LA7B 4JNDA 2JFTA 3W44A 3NMTB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I44 A;  2POP A;  2POM A;  3ZVU B;  2J4O A;  3EQ2 A;  4RAG A;  3W40 A;  3UJK A;  3FXL A;  2J86 A;  3W41 A;  4OIC B;  3MQ3 A;  4YZG A;  3W43 A;  3NMN B;  3KDJ B;  5JO2 B;  2JFS A;  3RT0 A;  3PU9 A;  4YZH A;  4RAF A;  4LG5 B;  3ZT9 A;  4DA1 A;  1A6Q A;  3KB3 B;  3NMV B;  3ES2 A;  3FXK A;  2J82 A;  3F79 A;  3UJG B;  3RNR A;  2V06 A;  3N3C A;  2ISN A;  4RA2 A;  3FXJ A;  3UJL B;  3FXO A;  3T9Q A;  4N0G A;  2IRM A;  3KE6 A;  3JRQ A;  4WVO B;  3W45 A;  5D2U A;  1TXO A;  2I0O A;  3FXM A;  2IQ1 A;  5JO1 B;  2PK0 A;  2XZV A;  2PNQ A;  3T91 A;  5F1M A;  4DS8 B;  2CM1 A;  2P8E A;  2JFR A;  3W42 A;  4LGA B;  4LGB B;  5ITI A;  2Y09 A;  3D8K A;  3QN1 B;  4LA7 B;  4JND A;  2JFT A;  3W44 A;  3NMT B; 
#chains in the Genus database with same CATH topology
 2I44 A;  2POP A;  2POM A;  3ZVU B;  2J4O A;  3EQ2 A;  4RAG A;  3W40 A;  3UJK A;  3FXL A;  2J86 A;  3W41 A;  4OIC B;  3MQ3 A;  4YZG A;  3W43 A;  3NMN B;  3KDJ B;  5JO2 B;  2JFS A;  3RT0 A;  3PU9 A;  4YZH A;  4RAF A;  4LG5 B;  3ZT9 A;  4DA1 A;  1A6Q A;  3KB3 B;  3NMV B;  3ES2 A;  3FXK A;  2J82 A;  3F79 A;  3UJG B;  3RNR A;  2V06 A;  3N3C A;  2ISN A;  4RA2 A;  3FXJ A;  3UJL B;  3FXO A;  3T9Q A;  4N0G A;  2IRM A;  3KE6 A;  3JRQ A;  4WVO B;  3W45 A;  5D2U A;  1TXO A;  4IIP A;  2I0O A;  3FXM A;  2IQ1 A;  5JO1 B;  2PK0 A;  2XZV A;  4IIK A;  2PNQ A;  3T91 A;  5F1M A;  4DS8 B;  2CM1 A;  2P8E A;  2JFR A;  3W42 A;  4LGA B;  4LGB B;  5ITI A;  2Y09 A;  3D8K A;  3QN1 B;  4LA7 B;  4JND A;  2JFT A;  3W44 A;  3NMT B; 
#chains in the Genus database with same CATH homology
 2I44 A;  2POP A;  2POM A;  3ZVU B;  2J4O A;  3EQ2 A;  4RAG A;  3W40 A;  3UJK A;  3FXL A;  2J86 A;  3W41 A;  4OIC B;  3MQ3 A;  4YZG A;  3W43 A;  3NMN B;  3KDJ B;  5JO2 B;  2JFS A;  3RT0 A;  3PU9 A;  4YZH A;  4RAF A;  4LG5 B;  3ZT9 A;  4DA1 A;  1A6Q A;  3KB3 B;  3NMV B;  3ES2 A;  3FXK A;  2J82 A;  3F79 A;  3UJG B;  3RNR A;  2V06 A;  3N3C A;  2ISN A;  4RA2 A;  3FXJ A;  3UJL B;  3FXO A;  3T9Q A;  4N0G A;  2IRM A;  3KE6 A;  3JRQ A;  4WVO B;  3W45 A;  5D2U A;  1TXO A;  2I0O A;  3FXM A;  2IQ1 A;  5JO1 B;  2PK0 A;  2XZV A;  2PNQ A;  3T91 A;  5F1M A;  4DS8 B;  2CM1 A;  2P8E A;  2JFR A;  3W42 A;  4LGA B;  4LGB B;  5ITI A;  2Y09 A;  3D8K A;  3QN1 B;  4LA7 B;  4JND A;  2JFT A;  3W44 A;  3NMT B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...