3MX9A

Molecular basis of engineered meganuclease targeting of the endogenous human rag1 locus
Total Genus 94
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
342
structure length
298
Chain Sequence
NTKYNKEFLLYLAGFVDGDGSIIAQINPNQSSKFKHRLRLTFYVTQKTQRRWFLDKLVDEIGVGYVRDSGSVSQYVLSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRASNKEFLLYLAGFVDSDGSIIAQIKPRQSNKFKHQLSLTFAVTQKTQRRWFLDKLVDEIGVGYVYDSGSVSDYRLSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords Protein scV3V2(G19S)
publication title Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus.
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 94
structure length 298
sequence length 342
ec nomenclature
pdb deposition date 2010-05-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 3mx9A02
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 3mx9A01
5A0WA 5AKNA 3UVFA 1LWSA 5A72A 1U0DA 5A78A 1EF0A 2VBOB 3MX9A 1G9ZA 4AAGA 2O7MA 1JVAA 3C0XA 3MIPA 1MOWA 3QQYA 4UNCA 3HYIA 3MISA 3C0WA 1N3EA 5E5SA 4AAFA 2VBJA 1LWTA 1G9YA 1T9IA 4UNAA 4Z20A 4AABA 5E63A 4UN8A 5AK9A 1M5XA 5A0MA 2VBJB 4UN9G 4D6NA 2VBLB 5A74A 1AF5A 4D6OA 2I3PA 3OOLA 2FLDA 1VDEA 2XE0A 4UN8G 4LOXA 2VS7A 1N3FA 4YISA 4AADA 5AKMA 3E54A 4EFJA 1BP7A 5AKFA 2VBLA 5A0MB 4UNBA 1B24A 5E5OA 3EH8A 1DFAA 4UN7A 4LQ0A 2XE0B 2I3QA 1U0CA 2CW8A 1UM2A 4AQXA 4Z1XA 4UN7G 2DCHX 1P8KZ 2VBNA 3OORA 3MXAA 3FD2A 4YITA 2AB5A 3MXBA 2CW7A 1DQ3A 4UT0A 2QOJZ 2VBNB 3HYJA 5A77A 1R7MA 4AAEA 4YHXA 4Z1ZA 3MXBB 3KO2A 2VBOA 2VS8A 1T9JA 3R7PA 4AQUA 5E67A 2EX5A 4UN9A
chains in the Genus database with same CATH superfamily
5A0WA 5AKNA 3UVFA 2F4LA 1LWSA 5A72A 1U0DA 5A78A 1EF0A 2VBOB 3MX9A 1G9ZA 4AAGA 2O7MA 1JVAA 3C0XA 3MIPA 1MOWA 3QQYA 4UNCA 3HYIA 3MISA 3C0WA 1N3EA 5E5SA 4AAFA 2VBJA 1LWTA 1G9YA 1T9IA 4UNAA 4Z20A 4AABA 5E63A 4UN8A 5AK9A 1M5XA 5A0MA 2VBJB 4UN9G 4D6NA 2VBLB 5A74A 1AF5A 4D6OA 2I3PA 3OOLA 2FLDA 1VDEA 2XE0A 4UN8G 4LOXA 2VS7A 1N3FA 4YISA 4AADA 5AKMA 3E54A 4EFJA 1BP7A 5AKFA 2VBLA 5A0MB 4UNBA 1B24A 5E5OA 3EH8A 1DFAA 4UN7A 4LQ0A 2XE0B 2I3QA 1U0CA 2CW8A 1UM2A 4AQXA 4Z1XA 4UN7G 4KZSA 2DCHX 1P8KZ 2VBNA 3OORA 3MXAA 3FD2A 4YITA 2AB5A 3MXBA 2CW7A 1DQ3A 4UT0A 2QOJZ 2VBNB 3HYJA 5A77A 1R7MA 4AAEA 4YHXA 4Z1ZA 3MXBB 3KO2A 2VBOA 2VS8A 1T9JA 3R7PA 4AQUA 5E67A 2EX5A 4UN9A
chains in the Genus database with same CATH topology
5A0WA 5AKNA 3UVFA 1LWSA 5A72A 1U0DA 5A78A 1EF0A 2VBOB 3MX9A 1G9ZA 4AAGA 2O7MA 1JVAA 3C0XA 3MIPA 1MOWA 3QQYA 4UNCA 3HYIA 3MISA 3C0WA 1N3EA 5E5SA 4AAFA 2VBJA 1LWTA 1G9YA 1T9IA 4UNAA 4Z20A 4AABA 5E63A 4UN8A 5AK9A 1M5XA 5A0MA 2VBJB 4UN9G 4D6NA 2VBLB 5A74A 1AF5A 4D6OA 2I3PA 3OOLA 2FLDA 1VDEA 2XE0A 4UN8G 4LOXA 2VS7A 1N3FA 4YISA 4AADA 5AKMA 3E54A 4EFJA 1BP7A 5AKFA 2VBLA 5A0MB 4UNBA 1B24A 5E5OA 3EH8A 1DFAA 4UN7A 4LQ0A 2XE0B 2I3QA 1U0CA 2CW8A 1UM2A 4AQXA 4Z1XA 4UN7G 2DCHX 1P8KZ 2VBNA 3OORA 3MXAA 3FD2A 4YITA 2AB5A 3MXBA 2CW7A 1DQ3A 4UT0A 2QOJZ 2VBNB 3HYJA 5A77A 1R7MA 4AAEA 4YHXA 4Z1ZA 3MXBB 3KO2A 2VBOA 2VS8A 1T9JA 3R7PA 4AQUA 5E67A 2EX5A 4UN9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5A0W A;  5AKN A;  3UVF A;  1LWS A;  5A72 A;  1U0D A;  5A78 A;  1EF0 A;  2VBO B;  3MX9 A;  1G9Z A;  4AAG A;  2O7M A;  1JVA A;  3C0X A;  3MIP A;  1MOW A;  3QQY A;  4UNC A;  3HYI A;  3MIS A;  3C0W A;  1N3E A;  5E5S A;  4AAF A;  2VBJ A;  1LWT A;  1G9Y A;  1T9I A;  4UNA A;  4Z20 A;  4AAB A;  5E63 A;  4UN8 A;  5AK9 A;  1M5X A;  5A0M A;  2VBJ B;  4UN9 G;  4D6N A;  2VBL B;  5A74 A;  1AF5 A;  4D6O A;  2I3P A;  3OOL A;  2FLD A;  1VDE A;  2XE0 A;  4UN8 G;  4LOX A;  2VS7 A;  1N3F A;  4YIS A;  4AAD A;  5AKM A;  3E54 A;  4EFJ A;  1BP7 A;  5AKF A;  2VBL A;  5A0M B;  4UNB A;  1B24 A;  5E5O A;  3EH8 A;  1DFA A;  4UN7 A;  4LQ0 A;  2XE0 B;  2I3Q A;  1U0C A;  2CW8 A;  1UM2 A;  4AQX A;  4Z1X A;  4UN7 G;  2DCH X;  1P8K Z;  2VBN A;  3OOR A;  3MXA A;  3FD2 A;  4YIT A;  2AB5 A;  3MXB A;  2CW7 A;  1DQ3 A;  4UT0 A;  2QOJ Z;  2VBN B;  3HYJ A;  5A77 A;  1R7M A;  4AAE A;  4YHX A;  4Z1Z A;  3MXB B;  3KO2 A;  2VBO A;  2VS8 A;  1T9J A;  3R7P A;  4AQU A;  5E67 A;  2EX5 A;  4UN9 A; 
#chains in the Genus database with same CATH topology
 5A0W A;  5AKN A;  3UVF A;  2F4L A;  1LWS A;  5A72 A;  1U0D A;  5A78 A;  1EF0 A;  2VBO B;  3MX9 A;  1G9Z A;  4AAG A;  2O7M A;  1JVA A;  3C0X A;  3MIP A;  1MOW A;  3QQY A;  4UNC A;  3HYI A;  3MIS A;  3C0W A;  1N3E A;  5E5S A;  4AAF A;  2VBJ A;  1LWT A;  1G9Y A;  1T9I A;  4UNA A;  4Z20 A;  4AAB A;  5E63 A;  4UN8 A;  5AK9 A;  1M5X A;  5A0M A;  2VBJ B;  4UN9 G;  4D6N A;  2VBL B;  5A74 A;  1AF5 A;  4D6O A;  2I3P A;  3OOL A;  2FLD A;  1VDE A;  2XE0 A;  4UN8 G;  4LOX A;  2VS7 A;  1N3F A;  4YIS A;  4AAD A;  5AKM A;  3E54 A;  4EFJ A;  1BP7 A;  5AKF A;  2VBL A;  5A0M B;  4UNB A;  1B24 A;  5E5O A;  3EH8 A;  1DFA A;  4UN7 A;  4LQ0 A;  2XE0 B;  2I3Q A;  1U0C A;  2CW8 A;  1UM2 A;  4AQX A;  4Z1X A;  4UN7 G;  4KZS A;  2DCH X;  1P8K Z;  2VBN A;  3OOR A;  3MXA A;  3FD2 A;  4YIT A;  2AB5 A;  3MXB A;  2CW7 A;  1DQ3 A;  4UT0 A;  2QOJ Z;  2VBN B;  3HYJ A;  5A77 A;  1R7M A;  4AAE A;  4YHX A;  4Z1Z A;  3MXB B;  3KO2 A;  2VBO A;  2VS8 A;  1T9J A;  3R7P A;  4AQU A;  5E67 A;  2EX5 A;  4UN9 A; 
#chains in the Genus database with same CATH homology
 5A0W A;  5AKN A;  3UVF A;  1LWS A;  5A72 A;  1U0D A;  5A78 A;  1EF0 A;  2VBO B;  3MX9 A;  1G9Z A;  4AAG A;  2O7M A;  1JVA A;  3C0X A;  3MIP A;  1MOW A;  3QQY A;  4UNC A;  3HYI A;  3MIS A;  3C0W A;  1N3E A;  5E5S A;  4AAF A;  2VBJ A;  1LWT A;  1G9Y A;  1T9I A;  4UNA A;  4Z20 A;  4AAB A;  5E63 A;  4UN8 A;  5AK9 A;  1M5X A;  5A0M A;  2VBJ B;  4UN9 G;  4D6N A;  2VBL B;  5A74 A;  1AF5 A;  4D6O A;  2I3P A;  3OOL A;  2FLD A;  1VDE A;  2XE0 A;  4UN8 G;  4LOX A;  2VS7 A;  1N3F A;  4YIS A;  4AAD A;  5AKM A;  3E54 A;  4EFJ A;  1BP7 A;  5AKF A;  2VBL A;  5A0M B;  4UNB A;  1B24 A;  5E5O A;  3EH8 A;  1DFA A;  4UN7 A;  4LQ0 A;  2XE0 B;  2I3Q A;  1U0C A;  2CW8 A;  1UM2 A;  4AQX A;  4Z1X A;  4UN7 G;  2DCH X;  1P8K Z;  2VBN A;  3OOR A;  3MXA A;  3FD2 A;  4YIT A;  2AB5 A;  3MXB A;  2CW7 A;  1DQ3 A;  4UT0 A;  2QOJ Z;  2VBN B;  3HYJ A;  5A77 A;  1R7M A;  4AAE A;  4YHX A;  4Z1Z A;  3MXB B;  3KO2 A;  2VBO A;  2VS8 A;  1T9J A;  3R7P A;  4AQU A;  5E67 A;  2EX5 A;  4UN9 A; 
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similar chains in the Genus database (?% sequence similarity)
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