3MXAA

Molecular basis of engineered meganuclease targeting of the endogenous human rag1 locus
Total Genus 97
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
343
structure length
301
Chain Sequence
NTKYNKEFLLYLAGFVDGDGSIIAQINPNQSSKFKHRLRLTFYVTQKTQRRWFLDKLVDEIGVGYVRDSGSVSQYVLSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLSNKEFLLYLAGFVDSDGSIIAQIKPRQSNKFKHQLSLTFAVTQKTQRRWFLDKLVDEIGVGYVYDSGSVSDYRLSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLDS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords scV3V2(G19S)
publication title Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus.
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 97
structure length 301
sequence length 343
ec nomenclature
pdb deposition date 2010-05-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 3mxaA02
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 3mxaA01
4UN8A 4AABA 1U0CA 2XE0B 1LWTA 3MIPA 3MXBA 2VS7A 4Z1ZA 4UNBA 2VBLB 1N3EA 5AKMA 1R7MA 4LQ0A 4Z20A 5A74A 1BP7A 4AADA 2EX5A 3C0XA 2VBJB 2XE0A 2I3QA 5E5SA 1DFAA 2VBOB 2DCHX 2O7MA 2VBNB 1G9YA 4YITA 4EFJA 2VBLA 2CW7A 1LWSA 1DQ3A 5E63A 4UNCA 1T9JA 5A0WA 4UNAA 4UT0A 2AB5A 2I3PA 1P8KZ 5A0MB 3HYJA 5A78A 2VBJA 3MXAA 4D6NA 4UN7G 2VBOA 4AQUA 2QOJZ 5AKNA 4UN7A 5AK9A 2VBNA 4Z1XA 2FLDA 3R7PA 1N3FA 3UVFA 4AAGA 3OOLA 4AAFA 3OORA 2VS8A 5AKFA 4YISA 4YHXA 3E54A 5A0MA 4UN9G 1JVAA 3EH8A 1VDEA 5E5OA 1B24A 4UN8G 3FD2A 3QQYA 4AQXA 1UM2A 3MISA 3MXBB 4D6OA 3C0WA 4LOXA 5A72A 3HYIA 5A77A 1EF0A 1AF5A 2CW8A 3KO2A 1M5XA 1T9IA 4AAEA 5E67A 1MOWA 3MX9A 1G9ZA 4UN9A 1U0DA
chains in the Genus database with same CATH superfamily
4UN8A 4AABA 1U0CA 2XE0B 1LWTA 3MIPA 3MXBA 2VS7A 4Z1ZA 4UNBA 2VBLB 1N3EA 5AKMA 1R7MA 4LQ0A 4Z20A 5A74A 1BP7A 4AADA 2EX5A 3C0XA 2VBJB 2XE0A 2I3QA 5E5SA 1DFAA 2VBOB 2DCHX 2O7MA 2VBNB 1G9YA 4YITA 4EFJA 2VBLA 2CW7A 1LWSA 1DQ3A 5E63A 4UNCA 1T9JA 5A0WA 4UNAA 4UT0A 2AB5A 2I3PA 1P8KZ 5A0MB 3HYJA 5A78A 2VBJA 3MXAA 4D6NA 4UN7G 2VBOA 4AQUA 2QOJZ 5AKNA 4UN7A 5AK9A 2VBNA 4Z1XA 2FLDA 3R7PA 1N3FA 3UVFA 4AAGA 3OOLA 4AAFA 3OORA 2VS8A 5AKFA 4YISA 4YHXA 3E54A 5A0MA 4UN9G 1JVAA 3EH8A 1VDEA 5E5OA 1B24A 4UN8G 3FD2A 4KZSA 3QQYA 4AQXA 1UM2A 3MISA 3MXBB 4D6OA 3C0WA 4LOXA 5A72A 3HYIA 5A77A 1EF0A 1AF5A 2CW8A 3KO2A 1M5XA 1T9IA 4AAEA 5E67A 2F4LA 1MOWA 3MX9A 1G9ZA 4UN9A 1U0DA
chains in the Genus database with same CATH topology
4UN8A 4AABA 1U0CA 2XE0B 1LWTA 3MIPA 3MXBA 2VS7A 4Z1ZA 4UNBA 2VBLB 1N3EA 5AKMA 1R7MA 4LQ0A 4Z20A 5A74A 1BP7A 4AADA 2EX5A 3C0XA 2VBJB 2XE0A 2I3QA 5E5SA 1DFAA 2VBOB 2DCHX 2O7MA 2VBNB 1G9YA 4YITA 4EFJA 2VBLA 2CW7A 1LWSA 1DQ3A 5E63A 4UNCA 1T9JA 5A0WA 4UNAA 4UT0A 2AB5A 2I3PA 1P8KZ 5A0MB 3HYJA 5A78A 2VBJA 3MXAA 4D6NA 4UN7G 2VBOA 4AQUA 2QOJZ 5AKNA 4UN7A 5AK9A 2VBNA 4Z1XA 2FLDA 3R7PA 1N3FA 3UVFA 4AAGA 3OOLA 4AAFA 3OORA 2VS8A 5AKFA 4YISA 4YHXA 3E54A 5A0MA 4UN9G 1JVAA 3EH8A 1VDEA 5E5OA 1B24A 4UN8G 3FD2A 3QQYA 4AQXA 1UM2A 3MISA 3MXBB 4D6OA 3C0WA 4LOXA 5A72A 3HYIA 5A77A 1EF0A 1AF5A 2CW8A 3KO2A 1M5XA 1T9IA 4AAEA 5E67A 1MOWA 3MX9A 1G9ZA 4UN9A 1U0DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UN8 A;  4AAB A;  1U0C A;  2XE0 B;  1LWT A;  3MIP A;  3MXB A;  2VS7 A;  4Z1Z A;  4UNB A;  2VBL B;  1N3E A;  5AKM A;  1R7M A;  4LQ0 A;  4Z20 A;  5A74 A;  1BP7 A;  4AAD A;  2EX5 A;  3C0X A;  2VBJ B;  2XE0 A;  2I3Q A;  5E5S A;  1DFA A;  2VBO B;  2DCH X;  2O7M A;  2VBN B;  1G9Y A;  4YIT A;  4EFJ A;  2VBL A;  2CW7 A;  1LWS A;  1DQ3 A;  5E63 A;  4UNC A;  1T9J A;  5A0W A;  4UNA A;  4UT0 A;  2AB5 A;  2I3P A;  1P8K Z;  5A0M B;  3HYJ A;  5A78 A;  2VBJ A;  3MXA A;  4D6N A;  4UN7 G;  2VBO A;  4AQU A;  2QOJ Z;  5AKN A;  4UN7 A;  5AK9 A;  2VBN A;  4Z1X A;  2FLD A;  3R7P A;  1N3F A;  3UVF A;  4AAG A;  3OOL A;  4AAF A;  3OOR A;  2VS8 A;  5AKF A;  4YIS A;  4YHX A;  3E54 A;  5A0M A;  4UN9 G;  1JVA A;  3EH8 A;  1VDE A;  5E5O A;  1B24 A;  4UN8 G;  3FD2 A;  3QQY A;  4AQX A;  1UM2 A;  3MIS A;  3MXB B;  4D6O A;  3C0W A;  4LOX A;  5A72 A;  3HYI A;  5A77 A;  1EF0 A;  1AF5 A;  2CW8 A;  3KO2 A;  1M5X A;  1T9I A;  4AAE A;  5E67 A;  1MOW A;  3MX9 A;  1G9Z A;  4UN9 A;  1U0D A; 
#chains in the Genus database with same CATH topology
 4UN8 A;  4AAB A;  1U0C A;  2XE0 B;  1LWT A;  3MIP A;  3MXB A;  2VS7 A;  4Z1Z A;  4UNB A;  2VBL B;  1N3E A;  5AKM A;  1R7M A;  4LQ0 A;  4Z20 A;  5A74 A;  1BP7 A;  4AAD A;  2EX5 A;  3C0X A;  2VBJ B;  2XE0 A;  2I3Q A;  5E5S A;  1DFA A;  2VBO B;  2DCH X;  2O7M A;  2VBN B;  1G9Y A;  4YIT A;  4EFJ A;  2VBL A;  2CW7 A;  1LWS A;  1DQ3 A;  5E63 A;  4UNC A;  1T9J A;  5A0W A;  4UNA A;  4UT0 A;  2AB5 A;  2I3P A;  1P8K Z;  5A0M B;  3HYJ A;  5A78 A;  2VBJ A;  3MXA A;  4D6N A;  4UN7 G;  2VBO A;  4AQU A;  2QOJ Z;  5AKN A;  4UN7 A;  5AK9 A;  2VBN A;  4Z1X A;  2FLD A;  3R7P A;  1N3F A;  3UVF A;  4AAG A;  3OOL A;  4AAF A;  3OOR A;  2VS8 A;  5AKF A;  4YIS A;  4YHX A;  3E54 A;  5A0M A;  4UN9 G;  1JVA A;  3EH8 A;  1VDE A;  5E5O A;  1B24 A;  4UN8 G;  3FD2 A;  4KZS A;  3QQY A;  4AQX A;  1UM2 A;  3MIS A;  3MXB B;  4D6O A;  3C0W A;  4LOX A;  5A72 A;  3HYI A;  5A77 A;  1EF0 A;  1AF5 A;  2CW8 A;  3KO2 A;  1M5X A;  1T9I A;  4AAE A;  5E67 A;  2F4L A;  1MOW A;  3MX9 A;  1G9Z A;  4UN9 A;  1U0D A; 
#chains in the Genus database with same CATH homology
 4UN8 A;  4AAB A;  1U0C A;  2XE0 B;  1LWT A;  3MIP A;  3MXB A;  2VS7 A;  4Z1Z A;  4UNB A;  2VBL B;  1N3E A;  5AKM A;  1R7M A;  4LQ0 A;  4Z20 A;  5A74 A;  1BP7 A;  4AAD A;  2EX5 A;  3C0X A;  2VBJ B;  2XE0 A;  2I3Q A;  5E5S A;  1DFA A;  2VBO B;  2DCH X;  2O7M A;  2VBN B;  1G9Y A;  4YIT A;  4EFJ A;  2VBL A;  2CW7 A;  1LWS A;  1DQ3 A;  5E63 A;  4UNC A;  1T9J A;  5A0W A;  4UNA A;  4UT0 A;  2AB5 A;  2I3P A;  1P8K Z;  5A0M B;  3HYJ A;  5A78 A;  2VBJ A;  3MXA A;  4D6N A;  4UN7 G;  2VBO A;  4AQU A;  2QOJ Z;  5AKN A;  4UN7 A;  5AK9 A;  2VBN A;  4Z1X A;  2FLD A;  3R7P A;  1N3F A;  3UVF A;  4AAG A;  3OOL A;  4AAF A;  3OOR A;  2VS8 A;  5AKF A;  4YIS A;  4YHX A;  3E54 A;  5A0M A;  4UN9 G;  1JVA A;  3EH8 A;  1VDE A;  5E5O A;  1B24 A;  4UN8 G;  3FD2 A;  3QQY A;  4AQX A;  1UM2 A;  3MIS A;  3MXB B;  4D6O A;  3C0W A;  4LOX A;  5A72 A;  3HYI A;  5A77 A;  1EF0 A;  1AF5 A;  2CW8 A;  3KO2 A;  1M5X A;  1T9I A;  4AAE A;  5E67 A;  1MOW A;  3MX9 A;  1G9Z A;  4UN9 A;  1U0D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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