3MXBA

Molecular basis of engineered meganuclease targeting of the endogenous human rag1 locus
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
153
structure length
153
Chain Sequence
NTKYNKKFLLYLAGFVDGDGSIIAQINPNQSSKFKHRLRLTFYVTQKTQRRWFLDKLVDEIGVGYVRDSGSVSQYVLSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLDS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords V3(E8K)
publication title Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus.
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 48
structure length 153
sequence length 153
chains with identical sequence R
ec nomenclature
pdb deposition date 2010-05-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 3mxbA00
3EH8A 1P8KZ 5A78A 3E54A 5E5SA 1M5XA 2DCHX 4YISA 1T9IA 2I3QA 2FLDA 3OOLA 1LWSA 5AKNA 4D6NA 4YHXA 1U0DA 5A72A 1B24A 4AAGA 5E5OA 2VS8A 2QOJZ 2VBLB 2VS7A 3QQYA 3MXBA 5A74A 4UNAA 1EF0A 4UNBA 2CW8A 3MISA 4Z1XA 4UN7A 4AADA 3OORA 5E63A 3MXBB 2XE0A 4Z1ZA 2EX5A 1DFAA 5AKFA 2VBOA 4YITA 2VBNA 2AB5A 2CW7A 4UN9G 1T9JA 4AQXA 5AKMA 1U0CA 3HYIA 2VBOB 5A0MA 1G9YA 2VBNB 1JVAA 4UN9A 4AAEA 4LOXA 1UM2A 5A77A 3C0WA 1G9ZA 2O7MA 5A0MB 3HYJA 4UN8G 4AABA 3C0XA 2XE0B 4EFJA 2VBJA 1N3FA 4UT0A 3MX9A 5A0WA 2I3PA 3KO2A 1MOWA 3FD2A 4UN8A 4UNCA 4AAFA 4Z20A 1VDEA 1AF5A 3MXAA 3MIPA 2VBJB 5E67A 2VBLA 3UVFA 4D6OA 4AQUA 5AK9A 4LQ0A 3R7PA 1R7MA 1LWTA 1BP7A 1N3EA 4UN7G 1DQ3A
chains in the Genus database with same CATH superfamily
3EH8A 1P8KZ 5A78A 3E54A 5E5SA 1M5XA 2DCHX 4YISA 1T9IA 2I3QA 2FLDA 3OOLA 1LWSA 5AKNA 4D6NA 4YHXA 1U0DA 5A72A 1B24A 4AAGA 5E5OA 2VS8A 2QOJZ 2VBLB 2VS7A 3QQYA 3MXBA 5A74A 4UNAA 1EF0A 4UNBA 2F4LA 2CW8A 3MISA 4Z1XA 4UN7A 4AADA 3OORA 5E63A 3MXBB 2XE0A 4Z1ZA 2EX5A 1DFAA 4KZSA 5AKFA 2VBOA 4YITA 2VBNA 2AB5A 2CW7A 4UN9G 1T9JA 4AQXA 5AKMA 1U0CA 3HYIA 2VBOB 5A0MA 1G9YA 2VBNB 1JVAA 4UN9A 4AAEA 4LOXA 1UM2A 5A77A 3C0WA 1G9ZA 2O7MA 5A0MB 3HYJA 4UN8G 4AABA 3C0XA 2XE0B 4EFJA 2VBJA 1N3FA 4UT0A 3MX9A 5A0WA 2I3PA 3KO2A 1MOWA 3FD2A 4UN8A 4UNCA 4AAFA 4Z20A 1VDEA 1AF5A 3MXAA 3MIPA 2VBJB 5E67A 2VBLA 3UVFA 4D6OA 4AQUA 5AK9A 4LQ0A 3R7PA 1R7MA 1LWTA 1BP7A 1N3EA 4UN7G 1DQ3A
chains in the Genus database with same CATH topology
3EH8A 1P8KZ 5A78A 3E54A 5E5SA 1M5XA 2DCHX 4YISA 1T9IA 2I3QA 2FLDA 3OOLA 1LWSA 5AKNA 4D6NA 4YHXA 1U0DA 5A72A 1B24A 4AAGA 5E5OA 2VS8A 2QOJZ 2VBLB 2VS7A 3QQYA 3MXBA 5A74A 4UNAA 1EF0A 4UNBA 2CW8A 3MISA 4Z1XA 4UN7A 4AADA 3OORA 5E63A 3MXBB 2XE0A 4Z1ZA 2EX5A 1DFAA 5AKFA 2VBOA 4YITA 2VBNA 2AB5A 2CW7A 4UN9G 1T9JA 4AQXA 5AKMA 1U0CA 3HYIA 2VBOB 5A0MA 1G9YA 2VBNB 1JVAA 4UN9A 4AAEA 4LOXA 1UM2A 5A77A 3C0WA 1G9ZA 2O7MA 5A0MB 3HYJA 4UN8G 4AABA 3C0XA 2XE0B 4EFJA 2VBJA 1N3FA 4UT0A 3MX9A 5A0WA 2I3PA 3KO2A 1MOWA 3FD2A 4UN8A 4UNCA 4AAFA 4Z20A 1VDEA 1AF5A 3MXAA 3MIPA 2VBJB 5E67A 2VBLA 3UVFA 4D6OA 4AQUA 5AK9A 4LQ0A 3R7PA 1R7MA 1LWTA 1BP7A 1N3EA 4UN7G 1DQ3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EH8 A;  1P8K Z;  5A78 A;  3E54 A;  5E5S A;  1M5X A;  2DCH X;  4YIS A;  1T9I A;  2I3Q A;  2FLD A;  3OOL A;  1LWS A;  5AKN A;  4D6N A;  4YHX A;  1U0D A;  5A72 A;  1B24 A;  4AAG A;  5E5O A;  2VS8 A;  2QOJ Z;  2VBL B;  2VS7 A;  3QQY A;  3MXB A;  5A74 A;  4UNA A;  1EF0 A;  4UNB A;  2CW8 A;  3MIS A;  4Z1X A;  4UN7 A;  4AAD A;  3OOR A;  5E63 A;  3MXB B;  2XE0 A;  4Z1Z A;  2EX5 A;  1DFA A;  5AKF A;  2VBO A;  4YIT A;  2VBN A;  2AB5 A;  2CW7 A;  4UN9 G;  1T9J A;  4AQX A;  5AKM A;  1U0C A;  3HYI A;  2VBO B;  5A0M A;  1G9Y A;  2VBN B;  1JVA A;  4UN9 A;  4AAE A;  4LOX A;  1UM2 A;  5A77 A;  3C0W A;  1G9Z A;  2O7M A;  5A0M B;  3HYJ A;  4UN8 G;  4AAB A;  3C0X A;  2XE0 B;  4EFJ A;  2VBJ A;  1N3F A;  4UT0 A;  3MX9 A;  5A0W A;  2I3P A;  3KO2 A;  1MOW A;  3FD2 A;  4UN8 A;  4UNC A;  4AAF A;  4Z20 A;  1VDE A;  1AF5 A;  3MXA A;  3MIP A;  2VBJ B;  5E67 A;  2VBL A;  3UVF A;  4D6O A;  4AQU A;  5AK9 A;  4LQ0 A;  3R7P A;  1R7M A;  1LWT A;  1BP7 A;  1N3E A;  4UN7 G;  1DQ3 A; 
#chains in the Genus database with same CATH topology
 3EH8 A;  1P8K Z;  5A78 A;  3E54 A;  5E5S A;  1M5X A;  2DCH X;  4YIS A;  1T9I A;  2I3Q A;  2FLD A;  3OOL A;  1LWS A;  5AKN A;  4D6N A;  4YHX A;  1U0D A;  5A72 A;  1B24 A;  4AAG A;  5E5O A;  2VS8 A;  2QOJ Z;  2VBL B;  2VS7 A;  3QQY A;  3MXB A;  5A74 A;  4UNA A;  1EF0 A;  4UNB A;  2F4L A;  2CW8 A;  3MIS A;  4Z1X A;  4UN7 A;  4AAD A;  3OOR A;  5E63 A;  3MXB B;  2XE0 A;  4Z1Z A;  2EX5 A;  1DFA A;  4KZS A;  5AKF A;  2VBO A;  4YIT A;  2VBN A;  2AB5 A;  2CW7 A;  4UN9 G;  1T9J A;  4AQX A;  5AKM A;  1U0C A;  3HYI A;  2VBO B;  5A0M A;  1G9Y A;  2VBN B;  1JVA A;  4UN9 A;  4AAE A;  4LOX A;  1UM2 A;  5A77 A;  3C0W A;  1G9Z A;  2O7M A;  5A0M B;  3HYJ A;  4UN8 G;  4AAB A;  3C0X A;  2XE0 B;  4EFJ A;  2VBJ A;  1N3F A;  4UT0 A;  3MX9 A;  5A0W A;  2I3P A;  3KO2 A;  1MOW A;  3FD2 A;  4UN8 A;  4UNC A;  4AAF A;  4Z20 A;  1VDE A;  1AF5 A;  3MXA A;  3MIP A;  2VBJ B;  5E67 A;  2VBL A;  3UVF A;  4D6O A;  4AQU A;  5AK9 A;  4LQ0 A;  3R7P A;  1R7M A;  1LWT A;  1BP7 A;  1N3E A;  4UN7 G;  1DQ3 A; 
#chains in the Genus database with same CATH homology
 3EH8 A;  1P8K Z;  5A78 A;  3E54 A;  5E5S A;  1M5X A;  2DCH X;  4YIS A;  1T9I A;  2I3Q A;  2FLD A;  3OOL A;  1LWS A;  5AKN A;  4D6N A;  4YHX A;  1U0D A;  5A72 A;  1B24 A;  4AAG A;  5E5O A;  2VS8 A;  2QOJ Z;  2VBL B;  2VS7 A;  3QQY A;  3MXB A;  5A74 A;  4UNA A;  1EF0 A;  4UNB A;  2CW8 A;  3MIS A;  4Z1X A;  4UN7 A;  4AAD A;  3OOR A;  5E63 A;  3MXB B;  2XE0 A;  4Z1Z A;  2EX5 A;  1DFA A;  5AKF A;  2VBO A;  4YIT A;  2VBN A;  2AB5 A;  2CW7 A;  4UN9 G;  1T9J A;  4AQX A;  5AKM A;  1U0C A;  3HYI A;  2VBO B;  5A0M A;  1G9Y A;  2VBN B;  1JVA A;  4UN9 A;  4AAE A;  4LOX A;  1UM2 A;  5A77 A;  3C0W A;  1G9Z A;  2O7M A;  5A0M B;  3HYJ A;  4UN8 G;  4AAB A;  3C0X A;  2XE0 B;  4EFJ A;  2VBJ A;  1N3F A;  4UT0 A;  3MX9 A;  5A0W A;  2I3P A;  3KO2 A;  1MOW A;  3FD2 A;  4UN8 A;  4UNC A;  4AAF A;  4Z20 A;  1VDE A;  1AF5 A;  3MXA A;  3MIP A;  2VBJ B;  5E67 A;  2VBL A;  3UVF A;  4D6O A;  4AQU A;  5AK9 A;  4LQ0 A;  3R7P A;  1R7M A;  1LWT A;  1BP7 A;  1N3E A;  4UN7 G;  1DQ3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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