3N0UA

Crystal structure of tm1821, the 8-oxoguanine dna glycosylase of thermotoga maritima
Total Genus 86
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
209
structure length
209
Chain Sequence
HHMEELLKELERIREEAKPLVEQRFEEFKRLGEEGTEEDLFCELSFCVLTANWSAEGGIRAQKEIGKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLLGKLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRNTGVEDLAILDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILRKVAEAFGESPGKFDLYLWYLVKGKVDK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase, lyase
molecule keywords Probable N-glycosylase/DNA lyase
publication title Crystal structure of Tm1821, the 8-oxoguanine DNA glycosylase of Thermotoga maritima
rcsb
source organism Thermotoga maritima
total genus 86
structure length 209
sequence length 209
chains with identical sequence B, C
ec nomenclature ec 4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase.
pdb deposition date 2010-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 3n0uA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 3n0uA01
1P7MA 1M3QA 1YQLA 3IHOA 1KG6A 5KN8A 3CWUA 1YQMA 3N0UA 4YPRA 1N3AA 2NOZA 1XQOA 1KG4A 4EW0A 5KN9A 3I0WA 4HSBA 4UNFA 3F10A 3D4VA 1WEFA 4EA5A 1NKUA 3OH6A 4AI4A 3CW7A 4E9GA 4OFHA 1KO9A 4PIIA 1KEAA 1LWVA 1MPGA 2H56A 5AN4A 2JHJA 1EBMA 2OFIA 1N39A 4DK9A 2I5WA 2XHIA 4B24A 3CWAA 3CWSA 4B21A 3N5NX 2NOEA 1M3HA 3IH7A 4OFAA 3CWTA 1PVSA 4YOQA 3G0QA 1RRQA 1VRLA 2ABKA 3KTUA 4E9HA 1MUYA 1NGNA 1PU6A 3CVSA 3F0ZA 4YPHA 1WEGA 2YG8A 3CVTA 2NOBA 1YQRA 2NOHA 1FN7A 1PU8A 4AIAA 5CHZA 4E9EA 4EJZA 1KQJA 1LWWA 1LWYA 4B22A 4UOBA 4EJYA 4EVVA 3FSPA 1RRSA 1HU0A 3S6IA 1WEIA 1P59A 3I0XA 2JHNA 1PU7A 4OFEA 2NOLA 3FHGA 2NOFA 1N3CA 1YQKA 1KG2A 5DPKA 3OGDA 4EA4A 1KG7A 1XG7A 1XQPA 4B23A 1MUNA 1DIZA 4EW4A 1ORNA 3FHFA 1ORPA 2OFKA 1KG5A 1MUDA 2YG9A 1LMZA 3OH9A 4AI5A 1KG3A 2NOIA 2JG6A 3KNTA 4E9FA
chains in the Genus database with same CATH superfamily
1P7MA 3L2VA 1YQLA 3IHOA 1M3QA 1KG6A 5KN8A 3CWUA 1YQMA 3N0UA 4YPRA 4E7LA 1N3AA 5FRMA 3OYKA 2NOZA 1XQOA 1KG4A 4EW0A 5KN9A 3I0WA 4HSBA 4UNFA 3F10A 3D4VA 3OYAA 1WEFA 4EA5A 4BE2A 3OYFA 1NKUA 3OH6A 4AI4A 3CW7A 4E9GA 4OFHA 1KO9A 4BACA 4PIIA 1KEAA 1LWVA 1MPGA 2H56A 5AN4A 2JHJA 1EBMA 2OFIA 1N39A 4DK9A 2I5WA 2XHIA 3OS2A 3CWAA 4B24A 4ZTJA 3CWSA 3OYEA 3S3MA 3OYLA 3OYNA 4B21A 3N5NX 2NOEA 1M3HA 3IH7A 4OFAA 3L2RA 3NNQA 3R2XC 1PVSA 3CWTA 4IKFA 3OYJA 4YOQA 3OYDA 3G0QA 4E7HA 1RRQA 4BE1A 1VRLA 2ABKA 3KTUA 4E9HA 1MUYA 3OYGA 3OYIA 1NGNA 1PU6A 3CVSA 3F0ZA 4YPHA 1WEGA 2YG8A 3CVTA 2NOBA 1YQRA 2NOHA 1FN7A 1PU8A 4AIAA 3OYCA 5CHZA 4E9EA 3S3OA 4EJZA 3LCNA 1KQJA 1LWWA 2V75A 1LWYA 4B22A 4UOBA 4EJYA 4EVVA 3FSPA 1RRSA 1HU0A 3S6IA 1WEIA 3L2QA 1P59A 4BE0A 3I0XA 5FROA 3L2UA 4BDYA 2JHNA 1PU7A 4OFEA 5FRNA 2NOLA 1U84A 3FHGA 2NOFA 3OS0A 3OYMA 1YQKA 1KG2A 1N3CA 3VW4A 5DPKA 3OYHA 3OGDA 4EA4A 4E7JA 4E7KA 1KG7A 1XG7A 1XQPA 4B23A 3L2WA 1MUNA 1DIZA 4ZTFA 4EW4A 4BDZA 1ORNA 3FHFA 3S3NA 1ORPA 2OFKA 1KG5A 2W03A 2W04A 4NZGA 4E7IA 3OYBA 1MUDA 3OS1A 2YG9A 1LMZA 2JPSA 3OH9A 4AI5A 3OY9A 1KG3A 2NOIA 2JG6A 3KNTA 4E9FA
chains in the Genus database with same CATH topology
1P7MA 1M3QA 1YQLA 3IHOA 1KG6A 5KN8A 3CWUA 1YQMA 3N0UA 4YPRA 1N3AA 2NOZA 1XQOA 1KG4A 4EW0A 5KN9A 3I0WA 4HSBA 4UNFA 3F10A 3D4VA 1WEFA 4EA5A 1NKUA 3OH6A 4AI4A 3CW7A 4E9GA 4OFHA 1KO9A 4PIIA 1KEAA 1LWVA 1MPGA 2H56A 5AN4A 2JHJA 1EBMA 2OFIA 1N39A 4DK9A 2I5WA 2XHIA 4B24A 3CWAA 3CWSA 4B21A 3N5NX 2NOEA 1M3HA 3IH7A 4OFAA 3CWTA 1PVSA 4YOQA 3G0QA 1RRQA 1VRLA 2ABKA 3KTUA 4E9HA 1MUYA 1NGNA 1PU6A 3CVSA 3F0ZA 4YPHA 1WEGA 2YG8A 3CVTA 2NOBA 1YQRA 2NOHA 1FN7A 1PU8A 4AIAA 5CHZA 4E9EA 4EJZA 1KQJA 1LWWA 1LWYA 4B22A 4UOBA 4EJYA 4EVVA 3FSPA 1RRSA 1HU0A 3S6IA 1WEIA 1P59A 3I0XA 2JHNA 1PU7A 4OFEA 2NOLA 3FHGA 2NOFA 1N3CA 1YQKA 1KG2A 5DPKA 3OGDA 4EA4A 1KG7A 1XG7A 1XQPA 4B23A 1MUNA 1DIZA 4EW4A 1ORNA 3FHFA 1ORPA 2OFKA 1KG5A 1MUDA 2YG9A 1LMZA 3OH9A 4AI5A 1KG3A 2NOIA 2JG6A 3KNTA 4E9FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P7M A;  1M3Q A;  1YQL A;  3IHO A;  1KG6 A;  5KN8 A;  3CWU A;  1YQM A;  3N0U A;  4YPR A;  1N3A A;  2NOZ A;  1XQO A;  1KG4 A;  4EW0 A;  5KN9 A;  3I0W A;  4HSB A;  4UNF A;  3F10 A;  3D4V A;  1WEF A;  4EA5 A;  1NKU A;  3OH6 A;  4AI4 A;  3CW7 A;  4E9G A;  4OFH A;  1KO9 A;  4PII A;  1KEA A;  1LWV A;  1MPG A;  2H56 A;  5AN4 A;  2JHJ A;  1EBM A;  2OFI A;  1N39 A;  4DK9 A;  2I5W A;  2XHI A;  4B24 A;  3CWA A;  3CWS A;  4B21 A;  3N5N X;  2NOE A;  1M3H A;  3IH7 A;  4OFA A;  3CWT A;  1PVS A;  4YOQ A;  3G0Q A;  1RRQ A;  1VRL A;  2ABK A;  3KTU A;  4E9H A;  1MUY A;  1NGN A;  1PU6 A;  3CVS A;  3F0Z A;  4YPH A;  1WEG A;  2YG8 A;  3CVT A;  2NOB A;  1YQR A;  2NOH A;  1FN7 A;  1PU8 A;  4AIA A;  5CHZ A;  4E9E A;  4EJZ A;  1KQJ A;  1LWW A;  1LWY A;  4B22 A;  4UOB A;  4EJY A;  4EVV A;  3FSP A;  1RRS A;  1HU0 A;  3S6I A;  1WEI A;  1P59 A;  3I0X A;  2JHN A;  1PU7 A;  4OFE A;  2NOL A;  3FHG A;  2NOF A;  1N3C A;  1YQK A;  1KG2 A;  5DPK A;  3OGD A;  4EA4 A;  1KG7 A;  1XG7 A;  1XQP A;  4B23 A;  1MUN A;  1DIZ A;  4EW4 A;  1ORN A;  3FHF A;  1ORP A;  2OFK A;  1KG5 A;  1MUD A;  2YG9 A;  1LMZ A;  3OH9 A;  4AI5 A;  1KG3 A;  2NOI A;  2JG6 A;  3KNT A;  4E9F A; 
#chains in the Genus database with same CATH topology
 1P7M A;  3L2V A;  1YQL A;  3IHO A;  1M3Q A;  1KG6 A;  5KN8 A;  3CWU A;  1YQM A;  3N0U A;  4YPR A;  4E7L A;  1N3A A;  5FRM A;  3OYK A;  2NOZ A;  1XQO A;  1KG4 A;  4EW0 A;  5KN9 A;  3I0W A;  4HSB A;  4UNF A;  3F10 A;  3D4V A;  3OYA A;  1WEF A;  4EA5 A;  4BE2 A;  3OYF A;  1NKU A;  3OH6 A;  4AI4 A;  3CW7 A;  4E9G A;  4OFH A;  1KO9 A;  4BAC A;  4PII A;  1KEA A;  1LWV A;  1MPG A;  2H56 A;  5AN4 A;  2JHJ A;  1EBM A;  2OFI A;  1N39 A;  4DK9 A;  2I5W A;  2XHI A;  3OS2 A;  3CWA A;  4B24 A;  4ZTJ A;  3CWS A;  3OYE A;  3S3M A;  3OYL A;  3OYN A;  4B21 A;  3N5N X;  2NOE A;  1M3H A;  3IH7 A;  4OFA A;  3L2R A;  3NNQ A;  3R2X C;  1PVS A;  3CWT A;  4IKF A;  3OYJ A;  4YOQ A;  3OYD A;  3G0Q A;  4E7H A;  1RRQ A;  4BE1 A;  1VRL A;  2ABK A;  3KTU A;  4E9H A;  1MUY A;  3OYG A;  3OYI A;  1NGN A;  1PU6 A;  3CVS A;  3F0Z A;  4YPH A;  1WEG A;  2YG8 A;  3CVT A;  2NOB A;  1YQR A;  2NOH A;  1FN7 A;  1PU8 A;  4AIA A;  3OYC A;  5CHZ A;  4E9E A;  3S3O A;  4EJZ A;  3LCN A;  1KQJ A;  1LWW A;  2V75 A;  1LWY A;  4B22 A;  4UOB A;  4EJY A;  4EVV A;  3FSP A;  1RRS A;  1HU0 A;  3S6I A;  1WEI A;  3L2Q A;  1P59 A;  4BE0 A;  3I0X A;  5FRO A;  3L2U A;  4BDY A;  2JHN A;  1PU7 A;  4OFE A;  5FRN A;  2NOL A;  1U84 A;  3FHG A;  2NOF A;  3OS0 A;  3OYM A;  1YQK A;  1KG2 A;  1N3C A;  3VW4 A;  5DPK A;  3OYH A;  3OGD A;  4EA4 A;  4E7J A;  4E7K A;  1KG7 A;  1XG7 A;  1XQP A;  4B23 A;  3L2W A;  1MUN A;  1DIZ A;  4ZTF A;  4EW4 A;  4BDZ A;  1ORN A;  3FHF A;  3S3N A;  1ORP A;  2OFK A;  1KG5 A;  2W03 A;  2W04 A;  4NZG A;  4E7I A;  3OYB A;  1MUD A;  3OS1 A;  2YG9 A;  1LMZ A;  2JPS A;  3OH9 A;  4AI5 A;  3OY9 A;  1KG3 A;  2NOI A;  2JG6 A;  3KNT A;  4E9F A; 
#chains in the Genus database with same CATH homology
 1P7M A;  1M3Q A;  1YQL A;  3IHO A;  1KG6 A;  5KN8 A;  3CWU A;  1YQM A;  3N0U A;  4YPR A;  1N3A A;  2NOZ A;  1XQO A;  1KG4 A;  4EW0 A;  5KN9 A;  3I0W A;  4HSB A;  4UNF A;  3F10 A;  3D4V A;  1WEF A;  4EA5 A;  1NKU A;  3OH6 A;  4AI4 A;  3CW7 A;  4E9G A;  4OFH A;  1KO9 A;  4PII A;  1KEA A;  1LWV A;  1MPG A;  2H56 A;  5AN4 A;  2JHJ A;  1EBM A;  2OFI A;  1N39 A;  4DK9 A;  2I5W A;  2XHI A;  4B24 A;  3CWA A;  3CWS A;  4B21 A;  3N5N X;  2NOE A;  1M3H A;  3IH7 A;  4OFA A;  3CWT A;  1PVS A;  4YOQ A;  3G0Q A;  1RRQ A;  1VRL A;  2ABK A;  3KTU A;  4E9H A;  1MUY A;  1NGN A;  1PU6 A;  3CVS A;  3F0Z A;  4YPH A;  1WEG A;  2YG8 A;  3CVT A;  2NOB A;  1YQR A;  2NOH A;  1FN7 A;  1PU8 A;  4AIA A;  5CHZ A;  4E9E A;  4EJZ A;  1KQJ A;  1LWW A;  1LWY A;  4B22 A;  4UOB A;  4EJY A;  4EVV A;  3FSP A;  1RRS A;  1HU0 A;  3S6I A;  1WEI A;  1P59 A;  3I0X A;  2JHN A;  1PU7 A;  4OFE A;  2NOL A;  3FHG A;  2NOF A;  1N3C A;  1YQK A;  1KG2 A;  5DPK A;  3OGD A;  4EA4 A;  1KG7 A;  1XG7 A;  1XQP A;  4B23 A;  1MUN A;  1DIZ A;  4EW4 A;  1ORN A;  3FHF A;  1ORP A;  2OFK A;  1KG5 A;  1MUD A;  2YG9 A;  1LMZ A;  3OH9 A;  4AI5 A;  1KG3 A;  2NOI A;  2JG6 A;  3KNT A;  4E9F A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...