3N1KA

Crystal structure of a stwhy2-cere32 complex
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
161
structure length
161
Chain Sequence
GRVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDRFTNR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein/dna
molecule keywords protein StWhy2
publication title Crystal Structures of DNA-Whirly Complexes and Their Role in Arabidopsis Organelle Genome Repair.
pubmed doi rcsb
source organism Solanum tuberosum
total genus 36
structure length 161
sequence length 161
ec nomenclature
pdb deposition date 2010-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08536 Whirly Whirly transcription factor
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.31.10 Mainly Beta Roll Transcriptional Co-activator pc4; Chain A Transcriptional Coactivator Pc4; Chain A 3n1kA00
3R9ZA 1PCFA 4BG7A 3R9YA 2IT9A 4USGA 3N1JA 3RA0A 2PHEA 3N1KA 3N1HA 3N1LA 4KOOA 1L3AA 3N1IA 2C62A 4AGHA 4KOQA 4BHMA 4KOPA 2NVNA
chains in the Genus database with same CATH superfamily
3R9ZA 2GIDB 1PCFA 4BG7A 4BOBA 5FGPA 3R9YA 2IT9A 4USGA 2GIDA 3OBHA 3N1JA 3RA0A 2GIAB 2PHEA 3N1KA 4BXMA 3N1HA 3CM1A 4J38A 4BODA 3N1LA 2GIAA 4KOOA 2GJED 4BF3A 1L3AA 3N1IA 3MTVA 3K44A 2C62A 4AGHA 2GJEA 4KOQA 2M4FA 4BHMA 4KOPA 2NVNA
chains in the Genus database with same CATH topology
3R9ZA 1PCFA 4BG7A 3R9YA 2IT9A 4USGA 3N1JA 3RA0A 2PHEA 3N1KA 3N1HA 3N1LA 4KOOA 1L3AA 3N1IA 2C62A 4AGHA 4KOQA 4BHMA 4KOPA 2NVNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R9Z A;  1PCF A;  4BG7 A;  3R9Y A;  2IT9 A;  4USG A;  3N1J A;  3RA0 A;  2PHE A;  3N1K A;  3N1H A;  3N1L A;  4KOO A;  1L3A A;  3N1I A;  2C62 A;  4AGH A;  4KOQ A;  4BHM A;  4KOP A;  2NVN A; 
#chains in the Genus database with same CATH topology
 3R9Z A;  2GID B;  1PCF A;  4BG7 A;  4BOB A;  5FGP A;  3R9Y A;  2IT9 A;  4USG A;  2GID A;  3OBH A;  3N1J A;  3RA0 A;  2GIA B;  2PHE A;  3N1K A;  4BXM A;  3N1H A;  3CM1 A;  4J38 A;  4BOD A;  3N1L A;  2GIA A;  4KOO A;  2GJE D;  4BF3 A;  1L3A A;  3N1I A;  3MTV A;  3K44 A;  2C62 A;  4AGH A;  2GJE A;  4KOQ A;  2M4F A;  4BHM A;  4KOP A;  2NVN A; 
#chains in the Genus database with same CATH homology
 3R9Z A;  1PCF A;  4BG7 A;  3R9Y A;  2IT9 A;  4USG A;  3N1J A;  3RA0 A;  2PHE A;  3N1K A;  3N1H A;  3N1L A;  4KOO A;  1L3A A;  3N1I A;  2C62 A;  4AGH A;  4KOQ A;  4BHM A;  4KOP A;  2NVN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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